Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_5850 Physcomitrium patens HOM05D003933 ORTHO05D004746 4.8e-271 937.2 455 100.0
Mapoly0072s0109 Marchantia polymorpha HOM05D003933 ORTHO05D004746 2.7e-104 383.3 418 49.0
AagrBONN_evm.TU.Sc2ySwM_117.4016 Anthoceros agrestis HOM05D003933 ORTHO05D004746 1.6e-96 357.5 426 45.8
TAR629G2222 Trochodendron aralioides HOM05D003933 ORTHO05D004746 4.6e-88 329.3 411 44.3
arahy.Tifrunner.gnm1.ann1.2XRJ77 Arachis hypogaea HOM05D003933 ORTHO05D004746 4.3e-86 322.8 410 44.1
Thecc.02G159300 Theobroma cacao HOM05D003933 ORTHO05D004746 5.6e-86 322.4 405 43.7
Eucgr.J00872 Eucalyptus grandis HOM05D003933 ORTHO05D004746 9.5e-86 321.6 413 43.8
arahy.Tifrunner.gnm1.ann1.J5HH0A Arachis hypogaea HOM05D003933 ORTHO05D004746 2.1e-85 320.5 410 43.9
Aqoxy5G00269 Aquilegia oxysepala HOM05D003933 ORTHO05D004746 4.7e-85 319.3 411 42.6
Cfa008748 Carpinus fangiana HOM05D003933 ORTHO05D004746 3.1e-84 316.6 411 43.6
AUR62032977 Chenopodium quinoa HOM05D003933 ORTHO05D004746 8.9e-84 315.1 414 43.0
Gohir.A13G060600 Gossypium hirsutum HOM05D003933 ORTHO05D004746 8.9e-84 315.1 406 42.4
Lj2g0026122 Lotus japonicus HOM05D003933 ORTHO05D004746 8.9e-84 315.1 413 43.3
Os02g0634600 Oryza sativa ssp. japonica HOM05D003933 ORTHO05D004746 8.9e-84 315.1 401 43.9
Hund08600 Selenicereus undatus HOM05D003933 ORTHO05D004746 1.2e-83 314.7 413 42.9
Aa31LG3G18300 Aethionema arabicum HOM05D003933 ORTHO05D004746 2.6e-83 313.5 409 43.8
Gorai.013G069800 Gossypium raimondii HOM05D003933 ORTHO05D004746 2.6e-83 313.5 406 42.6
Potri.005G092000 Populus trichocarpa HOM05D003933 ORTHO05D004746 5.8e-83 312.4 408 42.6
VMungo0251G2024 Vigna mungo HOM05D003933 ORTHO05D004746 5.8e-83 312.4 426 43.9
COL.COLO4_08591 Corchorus olitorius HOM05D003933 ORTHO05D004746 9.9e-83 311.6 407 42.3
Glyma.09G282800 Glycine max HOM05D003933 ORTHO05D004746 9.9e-83 311.6 407 43.0
EL10Ac9g22955 Beta vulgaris HOM05D003933 ORTHO05D004746 1.7e-82 310.8 412 41.3
Actinidia14952 Actinidia chinensis HOM05D003933 ORTHO05D004746 2.2e-82 310.5 404 42.6
MSTRG.890 Avicennia marina HOM05D003933 ORTHO05D004746 2.9e-82 310.1 412 42.5
Atru.chr11.1157 Acer truncatum HOM05D003933 ORTHO05D004746 6.4e-82 308.9 408 43.1
Gohir.D13G061300 Gossypium hirsutum HOM05D003933 ORTHO05D004746 6.4e-82 308.9 406 42.4
QL05p009967 Quercus lobata HOM05D003933 ORTHO05D004746 6.4e-82 308.9 404 42.8
SGA_v2.0_scaffold38G15064 Striga asiatica HOM05D003933 ORTHO05D004746 6.4e-82 308.9 409 41.6
Migut.L00761 Erythranthe guttata HOM05D003933 ORTHO05D004746 8.4e-82 308.5 409 40.6
RcHm_v2.0_Chr4g0446781 Rosa chinensis HOM05D003933 ORTHO05D004746 8.4e-82 308.5 412 42.2
Solyc12g088450.3 Solanum lycopersicum HOM05D003933 ORTHO05D004746 1.1e-81 308.1 412 43.0
Ciclev10031732m.g Citrus clementina HOM05D003933 ORTHO05D004746 1.4e-81 307.8 402 42.3
Lsat_1_v5_gn_4_15060 Lactuca sativa HOM05D003933 ORTHO05D004746 1.4e-81 307.8 417 42.2
Psat6g135760 Pisum sativum HOM05D003933 ORTHO05D004746 1.4e-81 307.8 411 42.6
PSO063G7666 Papaver somniferum HOM05D003933 ORTHO05D004746 1.9e-81 307.4 411 43.1
ATR0618G423 Amborella trichopoda HOM05D003933 ORTHO05D004746 2.4e-81 307.0 440 42.3
Thhalv10004353m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 2.4e-81 307.0 404 43.1
Phvul.003G004900 Phaseolus vulgaris HOM05D003933 ORTHO05D004746 2.4e-81 307.0 405 43.2
AL6G34400 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 5.4e-81 305.8 407 43.2
AT5G23200 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 5.4e-81 305.8 401 43.4
ClCG10G012050 Citrullus lanatus HOM05D003933 ORTHO05D004746 7.1e-81 305.4 410 42.0
PSO782G2797 Papaver somniferum HOM05D003933 ORTHO05D004746 7.1e-81 305.4 411 43.3
Carub.0006s2098 Capsella rubella HOM05D003933 ORTHO05D004746 9.2e-81 305.1 406 42.6
Lalb_Chr10g0094951 Lupinus albus HOM05D003933 ORTHO05D004746 1.6e-80 304.3 412 43.2
Haze_11764 Corylus avellana HOM05D003933 ORTHO05D004746 2.7e-80 303.5 449 40.1
FAN07G0849 Fragaria x ananassa HOM05D003933 ORTHO05D004746 2.7e-80 303.5 409 41.8
Manes.08G053300 Manihot esculenta HOM05D003933 ORTHO05D004746 2.7e-80 303.5 409 42.1
CARHR190340 Cardamine hirsuta HOM05D003933 ORTHO05D004746 3.5e-80 303.1 416 42.5
FvH4_4g36990 Fragaria vesca HOM05D003933 ORTHO05D004746 3.5e-80 303.1 409 41.8
PGSC0003DMG402011550 Solanum tuberosum HOM05D003933 ORTHO05D004746 3.5e-80 303.1 412 42.5
THA.LOC104800863 Tarenaya hassleriana HOM05D003933 ORTHO05D004746 3.5e-80 303.1 406 42.4
BraA03t13757Z Brassica rapa HOM05D003933 ORTHO05D004746 6.0e-80 302.4 401 43.4
HanXRQChr12g0377651 Helianthus annuus HOM05D003933 ORTHO05D004746 6.0e-80 302.4 409 42.5
Sp2g23940 Schrenkiella parvula HOM05D003933 ORTHO05D004746 6.0e-80 302.4 399 42.9
Medtr1g037570 Medicago truncatula HOM05D003933 ORTHO05D004746 7.8e-80 302.0 412 42.5
MELO3C024011.2 Cucumis melo HOM05D003933 ORTHO05D004746 1.0e-79 301.6 413 40.7
Sed0001276 Sechium edule HOM05D003933 ORTHO05D004746 1.0e-79 301.6 406 42.1
ECA234G4145 Erigeron canadensis HOM05D003933 ORTHO05D004746 1.7e-79 300.8 407 41.8
Manes.09G017800 Manihot esculenta HOM05D003933 ORTHO05D004746 1.7e-79 300.8 415 40.7
CsaV3_3G031790 Cucumis sativus L. HOM05D003933 ORTHO05D004746 3.9e-79 299.7 400 41.8
A03p46330 Brassica napus HOM05D003933 ORTHO05D004746 5.1e-79 299.3 404 43.1
Ca_07914_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 6.6e-79 298.9 413 41.6
C07p44350 Brassica napus HOM05D003933 ORTHO05D004746 1.1e-78 298.1 402 42.0
BolC7t44956H Brassica oleracea HOM05D003933 ORTHO05D004746 1.1e-78 298.1 402 42.0
PGR142G4240 Punica granatum HOM05D003933 ORTHO05D004746 1.1e-78 298.1 406 42.9
Cc11_g08880 Coffea canephora HOM05D003933 ORTHO05D004746 1.5e-78 297.7 408 41.4
SMO364G0332 Selaginella moellendorffii HOM05D003933 ORTHO05D004746 1.9e-78 297.4 414 41.5
CANSAT78G0638 Cannabis sativa HOM05D003933 ORTHO05D004746 2.5e-78 297.0 410 41.5
TPR.G29790 Trifolium pratense HOM05D003933 ORTHO05D004746 4.3e-78 296.2 411 41.8
Duzib277G0001 Durio zibethinus HOM05D003933 ORTHO05D004746 5.6e-78 295.8 405 41.7
Prupe.1G348200 Prunus persica HOM05D003933 ORTHO05D004746 5.6e-78 295.8 410 42.0
Duzib132G1110 Durio zibethinus HOM05D003933 ORTHO05D004746 9.6e-78 295.0 406 41.6
TWI77G0671 Tripterygium wilfordii HOM05D003933 ORTHO05D004746 9.6e-78 295.0 407 42.0
Lj6A748G52 Lonicera japonica HOM05D003933 ORTHO05D004746 1.6e-77 294.3 404 41.1
MD13G1004400 Malus domestica HOM05D003933 ORTHO05D004746 2.1e-77 293.9 408 40.2
SEGI_04055 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 2.8e-77 293.5 422 40.5
CAN.G107.7 Capsicum annuum HOM05D003933 ORTHO05D004746 3.6e-77 293.1 412 40.8
Nitab4.5_0000569g0090 Nicotiana tabacum HOM05D003933 ORTHO05D004746 4.7e-77 292.7 412 41.3
Rhsim09G0099700 Rhododendron simsii HOM05D003933 ORTHO05D004746 1.1e-76 291.6 410 42.4
DCAR_007284 Daucus carota HOM05D003933 ORTHO05D004746 1.8e-76 290.8 414 41.3
Nitab4.5_0003643g0030 Nicotiana tabacum HOM05D003933 ORTHO05D004746 2.4e-76 290.4 412 41.5
SalBow8G0218 Salvia bowleyana HOM05D003933 ORTHO05D004746 5.3e-76 289.3 411 39.7
unitig_26.g10014 Utricularia gibba HOM05D003933 ORTHO05D004746 2.6e-75 287.0 393 42.0
Duzib248G0690 Durio zibethinus HOM05D003933 ORTHO05D004746 7.6e-75 285.4 396 40.7
DCAR_030211 Daucus carota HOM05D003933 ORTHO05D004746 1.7e-74 284.3 390 41.0
vmacro10631 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 1.7e-74 284.3 425 39.8
vmacro10628 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 1.9e-73 280.8 420 40.0
Peaxi162Scf00160g00123 Petunia axillaris HOM05D003933 ORTHO05D004746 2.4e-73 280.4 382 42.9
CSS0045284 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 3.5e-72 276.6 409 39.6
CiPaw.06G061200 Carya illinoinensis HOM05D003933 ORTHO05D004746 1.7e-71 274.2 373 42.4
CANSAT11G2660 Cannabis sativa HOM05D003933 ORTHO05D004746 8.7e-71 271.9 399 39.6
AL6G18670 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 2.5e-70 270.4 399 39.8
Zm00001eb248160 Zea mays HOM05D003933 ORTHO05D004746 2.5e-70 270.4 345 43.2
Cpa.g.sc0.130 Carica papaya HOM05D003933 ORTHO05D004746 2.1e-69 267.3 492 35.6
PGSC0003DMG400021516 Solanum tuberosum HOM05D003933 ORTHO05D004746 8.1e-69 265.4 403 40.4
Sabra05G0076300 Salix brachista HOM05D003933 ORTHO05D004746 1.1e-68 265.0 357 40.9
CSS0043425 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.4e-68 264.6 409 39.1
Peaxi162Scf00081g01011 Petunia axillaris HOM05D003933 ORTHO05D004746 5.3e-68 262.7 403 40.7
Nitab4.5_0004707g0060 Nicotiana tabacum HOM05D003933 ORTHO05D004746 1.2e-67 261.5 404 40.1
Hma1.2p1_0933F.1_g238310 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 2.6e-67 260.4 441 37.2
Hma1.2p1_2428F.1_g321995 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 2.6e-67 260.4 441 37.2
Thhalv10013838m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 4.5e-67 259.6 396 39.6
MBI06_g32507_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 5.8e-67 259.2 347 42.4
VMungo1127G0010 Vigna mungo HOM05D003933 ORTHO05D004746 1.3e-66 258.1 401 40.1
Solyc04g078160.4 Solanum lycopersicum HOM05D003933 ORTHO05D004746 8.4e-66 255.4 396 39.1
arahy.Tifrunner.gnm1.ann1.3AB2AC Arachis hypogaea HOM05D003933 ORTHO05D004746 1.1e-65 255.0 399 38.8
Nitab4.5_0000934g0120 Nicotiana tabacum HOM05D003933 ORTHO05D004746 2.4e-65 253.8 403 39.0
AT5G08270 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 3.2e-65 253.4 394 40.1
Sopen04g031790 Solanum pennellii HOM05D003933 ORTHO05D004746 5.4e-65 252.7 410 38.0
Glyma.11G100000 Glycine max HOM05D003933 ORTHO05D004746 9.3e-65 251.9 397 38.3
Sp6g34690 Schrenkiella parvula HOM05D003933 ORTHO05D004746 1.6e-64 251.1 376 38.3
arahy.Tifrunner.gnm1.ann1.E3G1QY Arachis hypogaea HOM05D003933 ORTHO05D004746 2.1e-64 250.8 399 39.1
CAN.G1054.19 Capsicum annuum HOM05D003933 ORTHO05D004746 3.5e-64 250.0 404 38.4
Carub.0006s0715 Capsella rubella HOM05D003933 ORTHO05D004746 3.0e-63 246.9 389 38.8
Medtr4g075120 Medicago truncatula HOM05D003933 ORTHO05D004746 3.9e-63 246.5 396 38.1
HPP92_008573 Vanilla planifolia HOM05D003933 ORTHO05D004746 3.9e-63 246.5 311 41.5
Lalb_Chr19g0139431 Lupinus albus HOM05D003933 ORTHO05D004746 5.1e-63 246.1 397 36.8
Sopen12g030430 Solanum pennellii HOM05D003933 ORTHO05D004746 1.5e-62 244.6 277 45.8
BcaB08g37269 Brassica carinata HOM05D003933 ORTHO05D004746 1.9e-62 244.2 400 38.2
Gorai.005G210900 Gossypium raimondii HOM05D003933 ORTHO05D004746 2.5e-62 243.8 391 36.6
TPR.G25000 Trifolium pratense HOM05D003933 ORTHO05D004746 7.4e-62 242.3 369 40.1
FAN12G2057 Fragaria x ananassa HOM05D003933 ORTHO05D004746 9.6e-62 241.9 409 36.7
MBI06_g23608_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 9.6e-62 241.9 381 38.8
CBR_g6576 Chara braunii HOM05D003933 ORTHO05D004746 1.6e-61 241.1 443 35.9
Ca_19016_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 1.6e-61 241.1 398 36.7
Gohir.A03G165000 Gossypium hirsutum HOM05D003933 ORTHO05D004746 1.6e-61 241.1 393 36.4
Gohir.D02G188200 Gossypium hirsutum HOM05D003933 ORTHO05D004746 1.6e-61 241.1 391 36.3
Lj3g0018867 Lotus japonicus HOM05D003933 ORTHO05D004746 4.8e-61 239.6 404 35.4
Lj3g0001561 Lotus japonicus HOM05D003933 ORTHO05D004746 8.1e-61 238.8 404 35.6
Potri.005G092100 Populus trichocarpa HOM05D003933 ORTHO05D004746 4.9e-58 229.6 374 37.2
Lj3g0003114 Lotus japonicus HOM05D003933 ORTHO05D004746 9.3e-57 225.3 403 35.2
Lj3g0021014 Lotus japonicus HOM05D003933 ORTHO05D004746 9.3e-57 225.3 403 35.2
BraA10t44888Z Brassica rapa HOM05D003933 ORTHO05D004746 1.2e-56 224.9 393 35.9
Lj3g0017683 Lotus japonicus HOM05D003933 ORTHO05D004746 2.1e-56 224.2 403 35.0
C09p68670 Brassica napus HOM05D003933 ORTHO05D004746 1.0e-55 221.9 393 35.6
BolC9t59613H Brassica oleracea HOM05D003933 ORTHO05D004746 1.3e-55 221.5 393 35.9
FAN17G2963 Fragaria x ananassa HOM05D003933 ORTHO05D004746 2.3e-55 220.7 285 42.8
A10p28410 Brassica napus HOM05D003933 ORTHO05D004746 5.1e-55 219.5 388 35.6
Psat7g177760 Pisum sativum HOM05D003933 ORTHO05D004746 1.5e-54 218.0 359 37.6
CDE08G0738 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 2.1e-53 214.2 277 43.7
Ca_20843_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 6.9e-52 209.1 360 36.1
CARHR204870 Cardamine hirsuta HOM05D003933 ORTHO05D004746 5.5e-49 199.5 271 41.3
CSS0006186 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.8e-47 194.5 287 38.7
CSS0027256 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 3.9e-47 193.4 269 39.4
CSS0013970 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 3.3e-46 190.3 291 38.1
CSS0049411 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 2.2e-45 187.6 244 41.0
Dinv17619 Davidia involucrata HOM05D003933 ORTHO05D004746 1.1e-44 185.3 220 45.9
MCO06G263 Micromonas commoda HOM05D003933 ORTHO05D004746 1.4e-44 184.9 341 34.6
GSVIVG01026245001 Vitis vinifera HOM05D003933 ORTHO05D004746 1.1e-38 165.2 405 30.6
PGSC0003DMG400011553 Solanum tuberosum HOM05D003933 ORTHO05D004746 7.4e-38 162.5 164 47.0
Cre02.g086076 Chlamydomonas reinhardtii HOM05D003933 ORTHO05D004746 7.7e-35 152.5 330 30.3
Sc10g0005110 Simmondsia chinensis HOM05D003933 ORTHO05D004746 7.9e-32 142.5 219 39.3
Sed0007936 Sechium edule HOM05D003933 ORTHO05D004746 1.4e-31 141.7 259 32.0
COL.COLO4_20883 Corchorus olitorius HOM05D003933 ORTHO05D004746 9.1e-20 102.4 106 44.3
MD16G1003200 Malus domestica HOM05D003933 ORTHO05D004746 1.3e-18 98.6 381 25.5
C06p10890 Brassica napus HOM05D003933 ORTHO05D004746 2.5e-17 94.4 157 35.7
C02p60970 Brassica napus HOM05D003933 ORTHO05D004746 1.2e-16 92.0 120 41.7
A02p41110 Brassica napus HOM05D003933 ORTHO05D004746 2.7e-16 90.9 84 52.4
SHI31071 Sapria himalayana HOM05D003933 ORTHO05D004746 8.0e-16 89.4 385 23.6
CDE08G1244 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 1.4e-12 78.6 103 42.7
SEGI_32331 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 8.5e-10 69.3 116 36.2
Oeu044350.1 Olea europaea HOM05D003933 ORTHO05D004746 1.5e-09 68.6 102 42.2
BcaC03g18034 Brassica carinata HOM05D003933 ORTHO05D004746 1.9e-09 68.2 167 31.1
Nn7g37760 Nelumbo nucifera HOM05D003933 ORTHO05D004746 5.5e-09 66.6 106 39.6
Sc10g0005100 Simmondsia chinensis HOM05D003933 ORTHO05D004746 5.5e-09 66.6 101 40.6


User provided reference genes

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