Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_5710 Physcomitrium patens HOM05D003649 ORTHO05D004498 9.3e-262 906.4 468 100.0
Pp3c14_4070 Physcomitrium patens HOM05D003649 ORTHO05D004498 6.3e-226 787.3 468 86.3
Mapoly0048s0058 Marchantia polymorpha HOM05D003649 ORTHO05D004498 1.1e-156 557.4 470 64.7
CBR_g984 Chara braunii HOM05D003649 ORTHO05D004498 4.8e-133 478.8 408 62.5
SMO358G0130 Selaginella moellendorffii HOM05D003649 ORTHO05D004498 3.8e-130 469.2 458 57.0
ATR1132G059 Amborella trichopoda HOM05D003649 ORTHO05D004498 4.2e-129 465.7 427 58.8
CANSAT01G2347 Cannabis sativa HOM05D003649 ORTHO05D004498 1.4e-127 460.7 442 55.2
Duzib168G1903 Durio zibethinus HOM05D003649 ORTHO05D004498 1.5e-126 457.2 441 56.0
MBI17_g43195_MAGBIO Magnolia biondii HOM05D003649 ORTHO05D004498 2.4e-124 449.9 389 61.2
Actinidia14919 Actinidia chinensis HOM05D003649 ORTHO05D004498 7.0e-124 448.4 460 53.3
CiPaw.08G013900 Carya illinoinensis HOM05D003649 ORTHO05D004498 1.5e-123 447.2 442 55.4
Potri.001G394000 Populus trichocarpa HOM05D003649 ORTHO05D004498 2.0e-123 446.8 457 52.7
QL02p065039 Quercus lobata HOM05D003649 ORTHO05D004498 2.6e-123 446.4 408 57.6
Gorai.001G124600 Gossypium raimondii HOM05D003649 ORTHO05D004498 3.5e-123 446.0 429 55.7
CSS0018218 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 4.5e-123 445.7 458 53.7
Cfa011266 Carpinus fangiana HOM05D003649 ORTHO05D004498 4.5e-123 445.7 434 54.1
CSS0028028 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 1.3e-122 444.1 465 52.7
DCAR_002270 Daucus carota HOM05D003649 ORTHO05D004498 1.7e-122 443.7 401 57.4
Gohir.D07G116200 Gossypium hirsutum HOM05D003649 ORTHO05D004498 3.8e-122 442.6 429 55.2
Prupe.4G148600 Prunus persica HOM05D003649 ORTHO05D004498 3.8e-122 442.6 473 52.2
PGR142G4312 Punica granatum HOM05D003649 ORTHO05D004498 6.5e-122 441.8 458 52.8
Potri.011G112500 Populus trichocarpa HOM05D003649 ORTHO05D004498 1.5e-121 440.7 459 51.4
GSVIVG01011050001 Vitis vinifera HOM05D003649 ORTHO05D004498 1.5e-121 440.7 431 54.8
Gohir.A07G112700 Gossypium hirsutum HOM05D003649 ORTHO05D004498 2.5e-121 439.9 431 54.3
TWI38G0227 Tripterygium wilfordii HOM05D003649 ORTHO05D004498 3.2e-121 439.5 481 53.0
GSVIVG01038352001 Vitis vinifera HOM05D003649 ORTHO05D004498 3.2e-121 439.5 391 57.8
Thecc.09G274600 Theobroma cacao HOM05D003649 ORTHO05D004498 9.4e-121 438.0 418 56.5
TAR627G1042 Trochodendron aralioides HOM05D003649 ORTHO05D004498 3.6e-120 436.0 383 59.5
AagrBONN_evm.TU.Sc2ySwM_117.301 Anthoceros agrestis HOM05D003649 ORTHO05D004498 4.7e-120 435.6 332 64.8
Ca_25060_v3 Cicer arietinum L. HOM05D003649 ORTHO05D004498 1.0e-119 434.5 455 50.3
Manes.14G150400 Manihot esculenta HOM05D003649 ORTHO05D004498 1.4e-119 434.1 412 56.3
Hma1.2p1_0505F.1_g168130 Hydrangea macrophylla HOM05D003649 ORTHO05D004498 1.8e-119 433.7 428 54.0
Glyma.05G087100 Glycine max HOM05D003649 ORTHO05D004498 3.0e-119 433.0 454 51.8
Cc05_g10190 Coffea canephora HOM05D003649 ORTHO05D004498 3.9e-119 432.6 346 63.0
PSO675G2950 Papaver somniferum HOM05D003649 ORTHO05D004498 5.2e-119 432.2 459 52.9
Aqoxy1G02521 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 6.7e-119 431.8 406 56.2
Phvul.004G052800 Phaseolus vulgaris HOM05D003649 ORTHO05D004498 1.5e-118 430.6 459 51.9
Nn7g38381 Nelumbo nucifera HOM05D003649 ORTHO05D004498 2.0e-118 430.3 428 54.0
MD10G1195400 Malus domestica HOM05D003649 ORTHO05D004498 4.4e-118 429.1 438 53.7
Manes.14G152600 Manihot esculenta HOM05D003649 ORTHO05D004498 4.4e-118 429.1 438 52.5
PSO541G1065 Papaver somniferum HOM05D003649 ORTHO05D004498 4.4e-118 429.1 463 52.3
Hund24921 Selenicereus undatus HOM05D003649 ORTHO05D004498 4.4e-118 429.1 456 51.1
Sc26g0001160 Simmondsia chinensis HOM05D003649 ORTHO05D004498 7.4e-118 428.3 402 57.2
Atru.chr3.3291 Acer truncatum HOM05D003649 ORTHO05D004498 2.8e-117 426.4 430 54.7
Lj2g0021753 Lotus japonicus HOM05D003649 ORTHO05D004498 6.3e-117 425.2 460 51.1
ECA236G2713 Erigeron canadensis HOM05D003649 ORTHO05D004498 1.1e-116 424.5 419 53.9
Eucgr.F01411 Eucalyptus grandis HOM05D003649 ORTHO05D004498 1.1e-116 424.5 391 56.3
Medtr5g025980 Medicago truncatula HOM05D003649 ORTHO05D004498 1.1e-116 424.5 464 49.8
SGA_v2.0_scaffold73G24356 Striga asiatica HOM05D003649 ORTHO05D004498 1.1e-116 424.5 432 53.7
FvH4_3g16580 Fragaria vesca HOM05D003649 ORTHO05D004498 1.8e-116 423.7 481 51.1
Oeu058434.1 Olea europaea HOM05D003649 ORTHO05D004498 1.8e-116 423.7 471 50.7
MSTRG.6707 Avicennia marina HOM05D003649 ORTHO05D004498 2.4e-116 423.3 436 52.8
AUR62036018 Chenopodium quinoa HOM05D003649 ORTHO05D004498 5.3e-116 422.2 417 56.6
Sabra11G0099700 Salix brachista HOM05D003649 ORTHO05D004498 5.3e-116 422.2 423 52.7
CDE06G0350 Ceratophyllum demersum HOM05D003649 ORTHO05D004498 7.0e-116 421.8 419 54.7
Glyma.03G190900 Glycine max HOM05D003649 ORTHO05D004498 1.2e-115 421.0 364 58.5
FAN25G2823 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.6e-115 420.6 474 49.8
Rhsim09G0104200 Rhododendron simsii HOM05D003649 ORTHO05D004498 2.0e-115 420.2 408 56.6
AT1G31660 Arabidopsis thaliana HOM05D003649 ORTHO05D004498 2.6e-115 419.9 432 51.9
Ciclev10023274m.g Citrus clementina HOM05D003649 ORTHO05D004498 3.5e-115 419.5 343 61.8
Carub.0001s2998 Capsella rubella HOM05D003649 ORTHO05D004498 5.9e-115 418.7 433 52.7
RcHm_v2.0_Chr5g0027651 Rosa chinensis HOM05D003649 ORTHO05D004498 5.9e-115 418.7 420 53.6
vmacro10596 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 1.0e-114 417.9 378 59.8
FAN16G3269 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.7e-114 417.2 483 49.3
FAN21G3990 Fragaria x ananassa HOM05D003649 ORTHO05D004498 2.2e-114 416.8 478 49.6
CARHR286950 Cardamine hirsuta HOM05D003649 ORTHO05D004498 2.9e-114 416.4 432 53.2
HanXRQChr13g0424451 Helianthus annuus HOM05D003649 ORTHO05D004498 2.9e-114 416.4 446 50.7
Sed0023018 Sechium edule HOM05D003649 ORTHO05D004498 2.9e-114 416.4 413 54.5
FAN21G1332 Fragaria x ananassa HOM05D003649 ORTHO05D004498 3.8e-114 416.0 478 50.6
Nitab4.5_0001924g0070 Nicotiana tabacum HOM05D003649 ORTHO05D004498 5.0e-114 415.6 411 52.8
Lsat_1_v5_gn_5_148460 Lactuca sativa HOM05D003649 ORTHO05D004498 6.5e-114 415.2 462 50.2
Os09g0352400 Oryza sativa ssp. japonica HOM05D003649 ORTHO05D004498 6.5e-114 415.2 459 50.5
SalBow5G3252 Salvia bowleyana HOM05D003649 ORTHO05D004498 8.5e-114 414.8 432 51.2
Actinidia37054 Actinidia chinensis HOM05D003649 ORTHO05D004498 1.1e-113 414.5 413 54.5
MELO3C024126.2 Cucumis melo HOM05D003649 ORTHO05D004498 1.5e-113 414.1 435 52.0
FAN11G3158 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.5e-113 414.1 475 50.9
Peaxi162Scf00111g00723 Petunia axillaris HOM05D003649 ORTHO05D004498 2.5e-113 413.3 458 49.6
THA.LOC104814384 Tarenaya hassleriana HOM05D003649 ORTHO05D004498 7.2e-113 411.8 446 50.2
Ah.13g074570 Amaranthus hybridus HOM05D003649 ORTHO05D004498 9.4e-113 411.4 464 49.8
CsaV3_7G025330 Cucumis sativus L. HOM05D003649 ORTHO05D004498 1.2e-112 411.0 435 51.3
SalBow6G0551 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.2e-112 411.0 430 51.9
EL10Ac3g06484 Beta vulgaris HOM05D003649 ORTHO05D004498 1.6e-112 410.6 424 52.1
SalBow8G0566 Salvia bowleyana HOM05D003649 ORTHO05D004498 3.6e-112 409.5 430 51.6
Aa31LG2G14410 Aethionema arabicum HOM05D003649 ORTHO05D004498 2.3e-111 406.8 435 50.8
Thhalv10007604m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 3.0e-111 406.4 441 51.7
COL.COLO4_24336 Corchorus olitorius HOM05D003649 ORTHO05D004498 1.5e-110 404.1 471 48.6
MCO03G098 Micromonas commoda HOM05D003649 ORTHO05D004498 2.0e-110 403.7 463 51.4
PSO339G1025 Papaver somniferum HOM05D003649 ORTHO05D004498 3.4e-110 402.9 435 52.2
PSO339G4670 Papaver somniferum HOM05D003649 ORTHO05D004498 7.5e-110 401.7 435 52.2
PGSC0003DMG400027653 Solanum tuberosum HOM05D003649 ORTHO05D004498 3.7e-109 399.4 399 51.4
TPR.G34458 Trifolium pratense HOM05D003649 ORTHO05D004498 4.8e-109 399.1 417 50.6
arahy.Tifrunner.gnm1.ann1.2990BW Arachis hypogaea HOM05D003649 ORTHO05D004498 8.3e-109 398.3 458 46.9
BcaB03g13795 Brassica carinata HOM05D003649 ORTHO05D004498 8.3e-109 398.3 404 54.2
Lalb_Chr21g0316901 Lupinus albus HOM05D003649 ORTHO05D004498 3.1e-108 396.4 403 51.6
ClCG09G009520 Citrullus lanatus HOM05D003649 ORTHO05D004498 1.2e-107 394.4 416 51.2
Sp1g27340 Schrenkiella parvula HOM05D003649 ORTHO05D004498 1.2e-107 394.4 446 50.0
AUR62035508 Chenopodium quinoa HOM05D003649 ORTHO05D004498 2.7e-107 393.3 426 51.2
Nitab4.5_0001864g0020 Nicotiana tabacum HOM05D003649 ORTHO05D004498 2.9e-106 389.8 335 57.6
Sopen07g029910 Solanum pennellii HOM05D003649 ORTHO05D004498 5.0e-106 389.0 348 55.5
C07p14470 Brassica napus HOM05D003649 ORTHO05D004498 8.5e-106 388.3 438 50.7
Psat2g144640 Pisum sativum HOM05D003649 ORTHO05D004498 1.1e-105 387.9 414 51.4
Cpa.g.sc54.5 Carica papaya HOM05D003649 ORTHO05D004498 4.2e-105 386.0 386 54.1
BolC7t41946H Brassica oleracea HOM05D003649 ORTHO05D004498 1.2e-104 384.4 438 50.2
A07p09400 Brassica napus HOM05D003649 ORTHO05D004498 8.0e-104 381.7 406 52.2
BraA07t28735Z Brassica rapa HOM05D003649 ORTHO05D004498 8.0e-104 381.7 406 52.2
BcaB07g32813 Brassica carinata HOM05D003649 ORTHO05D004498 1.0e-103 381.3 382 54.5
Zm00001eb065940 Zea mays HOM05D003649 ORTHO05D004498 4.0e-103 379.4 466 48.7
EL10Ac3g06580 Beta vulgaris HOM05D003649 ORTHO05D004498 1.2e-102 377.9 428 49.8
arahy.Tifrunner.gnm1.ann1.V43L5Z Arachis hypogaea HOM05D003649 ORTHO05D004498 2.0e-102 377.1 419 48.9
PRCOL_00003636 Prasinoderma coloniale HOM05D003649 ORTHO05D004498 4.4e-102 375.9 363 55.6
Migut.M00658 Erythranthe guttata HOM05D003649 ORTHO05D004498 7.5e-102 375.2 439 47.8
arahy.Tifrunner.gnm1.ann1.FP5V95 Arachis hypogaea HOM05D003649 ORTHO05D004498 6.3e-101 372.1 455 45.1
MD05G1209000 Malus domestica HOM05D003649 ORTHO05D004498 1.4e-100 370.9 396 52.5
Cre01.g063267 Chlamydomonas reinhardtii HOM05D003649 ORTHO05D004498 7.0e-100 368.6 470 47.4
Solyc07g056550.3 Solanum lycopersicum HOM05D003649 ORTHO05D004498 9.1e-100 368.2 329 55.6
A09p34660 Brassica napus HOM05D003649 ORTHO05D004498 1.2e-99 367.9 391 52.2
Lj1C808T9 Lonicera japonica HOM05D003649 ORTHO05D004498 3.5e-99 366.3 382 53.9
CANSAT80G0167 Cannabis sativa HOM05D003649 ORTHO05D004498 2.9e-98 363.2 281 64.8
BraA09t39000Z Brassica rapa HOM05D003649 ORTHO05D004498 6.6e-98 362.1 387 51.9
arahy.Tifrunner.gnm1.ann1.956DWW Arachis hypogaea HOM05D003649 ORTHO05D004498 7.2e-97 358.6 408 48.0
unitig_748.g7599 Utricularia gibba HOM05D003649 ORTHO05D004498 1.8e-95 354.0 441 47.4
Haze_02513 Corylus avellana HOM05D003649 ORTHO05D004498 6.8e-95 352.1 501 43.1
Aqoxy5G01320 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 2.0e-94 350.5 318 57.2
VMungo1127G0750 Vigna mungo HOM05D003649 ORTHO05D004498 2.6e-94 350.1 382 50.5
Gohir.A09G098001 Gossypium hirsutum HOM05D003649 ORTHO05D004498 3.4e-94 349.7 266 65.4
HPP92_001514 Vanilla planifolia HOM05D003649 ORTHO05D004498 5.7e-94 349.0 404 49.3
Rhsim09G0104400 Rhododendron simsii HOM05D003649 ORTHO05D004498 7.5e-94 348.6 449 46.8
Migut.M00659 Erythranthe guttata HOM05D003649 ORTHO05D004498 9.8e-94 348.2 440 46.4
Thecc.09G275100 Theobroma cacao HOM05D003649 ORTHO05D004498 1.8e-92 344.0 323 56.3
Haze_18856 Corylus avellana HOM05D003649 ORTHO05D004498 3.3e-89 333.2 473 42.9
BcaC05g27183 Brassica carinata HOM05D003649 ORTHO05D004498 5.2e-87 325.9 402 48.3
Migut.J00669 Erythranthe guttata HOM05D003649 ORTHO05D004498 2.6e-86 323.6 460 43.7
TPR.G9666 Trifolium pratense HOM05D003649 ORTHO05D004498 3.7e-85 319.7 279 59.1
vmacro10597 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 3.5e-83 313.2 519 38.7
Ah.13g066610 Amaranthus hybridus HOM05D003649 ORTHO05D004498 6.0e-83 312.4 342 49.4
A07p08470 Brassica napus HOM05D003649 ORTHO05D004498 8.6e-82 308.5 407 43.7
A07p11220 Brassica napus HOM05D003649 ORTHO05D004498 1.5e-81 307.8 407 44.2
COL.COLO4_22663 Corchorus olitorius HOM05D003649 ORTHO05D004498 1.1e-79 301.6 407 45.0
BcaC06g35364 Brassica carinata HOM05D003649 ORTHO05D004498 3.1e-79 300.1 408 42.9
Thhalv10028678m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 5.2e-79 299.3 416 42.5
BraA07t28915Z Brassica rapa HOM05D003649 ORTHO05D004498 4.4e-78 296.2 407 43.2
C07p13190 Brassica napus HOM05D003649 ORTHO05D004498 1.4e-76 291.2 373 44.8
BolC7t41812H Brassica oleracea HOM05D003649 ORTHO05D004498 1.9e-76 290.8 373 44.8
BolC5t31810H Brassica oleracea HOM05D003649 ORTHO05D004498 1.0e-74 285.0 327 50.2
C07p16930 Brassica napus HOM05D003649 ORTHO05D004498 3.1e-71 273.5 430 40.0
BcaC06g35591 Brassica carinata HOM05D003649 ORTHO05D004498 6.8e-71 272.3 357 44.0
BolC7t42199H Brassica oleracea HOM05D003649 ORTHO05D004498 2.2e-69 267.3 355 42.8
CANSAT54G0397 Cannabis sativa HOM05D003649 ORTHO05D004498 4.1e-68 263.1 209 63.6
Pp3c1_22730 Physcomitrium patens HOM05D003649 ORTHO05D004498 6.6e-66 255.8 153 86.3
RcHm_v2.0_Chr6g0291881 Rosa chinensis HOM05D003649 ORTHO05D004498 1.1e-63 248.4 367 39.0
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 1.5e-54 218.0 503 33.6
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 4.2e-52 209.9 255 45.1
Atru.chr3.2262 Acer truncatum HOM05D003649 ORTHO05D004498 3.5e-51 206.8 170 61.8
Atru.chr3.2268 Acer truncatum HOM05D003649 ORTHO05D004498 3.5e-51 206.8 171 62.0
SEGI_32462 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 4.8e-48 196.4 125 70.4
arahy.Tifrunner.gnm1.ann1.KE86EX Arachis hypogaea HOM05D003649 ORTHO05D004498 1.4e-39 168.3 194 43.8
Sabra16G0258400 Salix brachista HOM05D003649 ORTHO05D004498 1.0e-37 162.2 146 61.0
SEGI_37931 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 5.5e-36 156.4 94 79.8
arahy.Tifrunner.gnm1.ann1.S7QI7K Arachis hypogaea HOM05D003649 ORTHO05D004498 2.2e-29 134.4 166 44.0
SEGI_11889 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 2.3e-26 124.4 149 48.3
Actinidia13653 Actinidia chinensis HOM05D003649 ORTHO05D004498 3.7e-24 117.1 131 47.3
RhsimUnG0127900 Rhododendron simsii HOM05D003649 ORTHO05D004498 3.1e-23 114.0 84 69.0
arahy.Tifrunner.gnm1.ann1.CT835L Arachis hypogaea HOM05D003649 ORTHO05D004498 4.5e-22 110.2 119 46.2
AL6G50590 Arabidopsis lyrata HOM05D003649 ORTHO05D004498 1.7e-21 108.2 140 41.4
BolC9t56391H Brassica oleracea HOM05D003649 ORTHO05D004498 5.0e-21 106.7 98 51.0
C09p35520 Brassica napus HOM05D003649 ORTHO05D004498 4.6e-19 100.1 94 51.1
A09p28020 Brassica napus HOM05D003649 ORTHO05D004498 6.1e-19 99.8 94 53.2
BraA07t28632Z Brassica rapa HOM05D003649 ORTHO05D004498 1.8e-18 98.2 101 49.5
BcaC05g27926 Brassica carinata HOM05D003649 ORTHO05D004498 9.1e-15 85.9 167 32.9
DCAR_030782 Daucus carota HOM05D003649 ORTHO05D004498 3.4e-14 84.0 69 60.9
BolC7t42195H Brassica oleracea HOM05D003649 ORTHO05D040526 7.9e-11 72.8 138 37.7
SGA_v2.0_scaffold30G12442 Striga asiatica HOM05D003649 ORTHO05D004498 7.9e-11 72.8 96 45.8
BcaC04g21367 Brassica carinata HOM05D001554 ORTHO05D001481 8.2e-08 62.8 52 50.0
C09p32650 Brassica napus HOM05D003649 ORTHO05D004498 8.2e-08 62.8 52 50.0
MBI19_g34544_MAGBIO Magnolia biondii HOM05D000961 ORTHO05D000841 4.1e-07 60.5 57 50.9
SGA_v2.0_scaffold24G10283 Striga asiatica HOM05D003649 ORTHO05D031702 4.1e-07 60.5 49 53.1
Thecc.09G274800 Theobroma cacao HOM05D003649 ORTHO05D004498 4.1e-07 60.5 74 47.3


User provided reference genes

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