Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 6.2e-199 697.2 336 100.0
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 1.0e-84 317.8 253 57.3
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 3.6e-82 309.3 283 52.3
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 3.1e-81 306.2 281 52.3
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 6.8e-81 305.1 281 53.7
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 3.4e-80 302.8 292 50.0
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 4.4e-80 302.4 283 52.3
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 7.5e-80 301.6 280 52.1
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 1.3e-79 300.8 280 51.8
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.7e-79 300.4 280 51.8
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 2.9e-79 299.7 236 58.5
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 2.9e-79 299.7 262 55.0
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 8.3e-79 298.1 286 53.8
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 8.3e-79 298.1 307 47.9
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 1.1e-78 297.7 290 49.3
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 2.4e-78 296.6 281 51.2
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 2.4e-78 296.6 266 53.4
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 3.2e-78 296.2 291 49.1
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 7.1e-78 295.0 267 54.7
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 9.2e-78 294.7 252 54.4
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 1.2e-77 294.3 271 51.7
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.2e-77 294.3 282 50.7
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 1.2e-77 294.3 265 54.3
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 1.6e-77 293.9 250 55.2
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.6e-77 293.9 286 50.3
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 1.6e-77 293.9 282 51.1
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 2.7e-77 293.1 243 55.6
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 4.6e-77 292.4 279 49.5
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 7.8e-77 291.6 282 50.0
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 1.0e-76 291.2 264 54.5
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 1.3e-76 290.8 310 48.4
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 1.3e-76 290.8 292 50.0
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 2.3e-76 290.0 284 50.7
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 3.9e-76 289.3 289 49.5
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 3.9e-76 289.3 264 53.4
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 3.9e-76 289.3 279 49.8
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 3.9e-76 289.3 291 47.8
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 5.1e-76 288.9 261 53.3
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 5.1e-76 288.9 249 53.4
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 6.6e-76 288.5 254 53.1
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 8.6e-76 288.1 268 53.7
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 8.6e-76 288.1 296 48.3
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 1.1e-75 287.7 268 53.7
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 1.1e-75 287.7 267 52.1
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 1.5e-75 287.3 285 50.2
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 2.5e-75 286.6 296 49.0
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 2.5e-75 286.6 230 57.4
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 3.3e-75 286.2 298 49.0
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 4.3e-75 285.8 278 50.4
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 7.3e-75 285.0 294 47.3
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 9.5e-75 284.6 252 53.6
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 1.2e-74 284.3 268 52.6
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 1.6e-74 283.9 235 57.0
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 1.6e-74 283.9 261 52.1
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 2.1e-74 283.5 279 49.5
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 2.8e-74 283.1 310 47.4
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 2.8e-74 283.1 252 53.2
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 3.6e-74 282.7 275 49.8
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 4.7e-74 282.3 297 48.5
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 4.7e-74 282.3 297 48.5
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 4.7e-74 282.3 265 51.7
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 4.7e-74 282.3 288 49.7
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 6.2e-74 282.0 303 46.9
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 6.2e-74 282.0 286 47.2
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 1.1e-73 281.2 282 49.6
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 1.1e-73 281.2 282 50.0
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 1.1e-73 281.2 260 52.3
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 1.4e-73 280.8 229 55.5
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 1.8e-73 280.4 284 50.4
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 2.4e-73 280.0 230 56.1
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 3.1e-73 279.6 279 49.1
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 6.8e-73 278.5 310 46.1
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 6.8e-73 278.5 310 46.1
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 8.9e-73 278.1 248 52.8
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 1.2e-72 277.7 254 54.3
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 1.5e-72 277.3 269 51.7
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 1.5e-72 277.3 267 52.4
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 2.0e-72 276.9 231 57.1
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 2.0e-72 276.9 267 50.9
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 2.0e-72 276.9 266 51.5
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 2.6e-72 276.6 226 57.1
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 3.4e-72 276.2 242 55.0
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 4.4e-72 275.8 260 51.5
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 4.4e-72 275.8 229 55.9
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 5.8e-72 275.4 226 57.1
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 5.8e-72 275.4 258 51.2
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 5.8e-72 275.4 281 45.9
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 2.2e-71 273.5 306 45.1
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 2.2e-71 273.5 256 51.2
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 3.8e-71 272.7 229 55.0
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 3.8e-71 272.7 246 52.4
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 6.4e-71 271.9 282 47.5
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 8.4e-71 271.6 279 47.3
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 8.4e-71 271.6 281 45.6
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 1.4e-70 270.8 264 48.5
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 3.2e-70 269.6 250 53.2
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 3.2e-70 269.6 278 48.6
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 4.2e-70 269.2 221 57.9
HPP92_025401 Vanilla planifolia HOM05D004727 ORTHO05D005788 4.2e-70 269.2 210 58.6
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 2.1e-69 266.9 289 46.4
CiPaw.05G262100 Carya illinoinensis HOM05D004727 ORTHO05D005788 1.3e-68 264.2 230 52.2
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 3.0e-68 263.1 311 44.4
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 5.1e-68 262.3 330 44.5
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 1.9e-67 260.4 233 53.2
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 1.9e-67 260.4 233 53.2
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 5.6e-67 258.8 317 44.2
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 7.3e-67 258.5 314 43.6
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.6e-66 257.3 332 42.8
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 2.1e-66 256.9 270 47.8
Lalb_Chr19g0130651 Lupinus albus HOM05D004727 ORTHO05D005788 6.2e-66 255.4 242 50.4
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 2.2e-63 246.9 265 47.2
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 3.8e-63 246.1 276 47.8
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 4.9e-63 245.7 278 46.0
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.9e-62 243.8 265 47.5
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 3.2e-62 243.0 263 48.3
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 6.0e-61 238.8 266 45.5
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 6.0e-61 238.8 266 45.5
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 7.8e-61 238.4 302 42.4
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 5.1e-60 235.7 243 45.7
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 1.1e-59 234.6 321 39.6
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 2.4e-57 226.9 192 57.8
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 4.0e-57 226.1 196 54.6
AUR62036451 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.1e-54 218.0 236 47.0
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 3.2e-54 216.5 211 51.7
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 3.5e-53 213.0 198 50.0
MCO01G501 Micromonas commoda HOM05D004727 ORTHO05D005788 4.8e-50 202.6 253 40.7
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 2.0e-48 197.2 166 54.8
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 5.8e-48 195.7 169 55.0
AUR62017096 Chenopodium quinoa HOM05D004727 ORTHO05D005788 2.5e-46 190.3 204 47.1
FAN03G2629 Fragaria x ananassa HOM05D004727 ORTHO05D005788 4.2e-46 189.5 210 46.7
PRCOL_00002776 Prasinoderma coloniale HOM05D004727 ORTHO05D005788 5.5e-46 189.1 307 37.5
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 9.0e-41 171.8 198 44.9
MBI12_g08716_MAGBIO Magnolia biondii HOM05D004727 ORTHO05D005788 2.6e-40 170.2 177 49.7
Peaxi162Scf00444g00021 Petunia axillaris HOM05D004727 ORTHO05D005788 3.4e-40 169.9 213 42.3
QL09p012782 Quercus lobata HOM05D004727 ORTHO05D005788 1.3e-39 167.9 134 53.7
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.3e-34 151.4 161 47.8
AUR62036407 Chenopodium quinoa HOM05D004727 ORTHO05D005788 4.8e-34 149.4 200 42.0
Actinidia31840 Actinidia chinensis HOM05D004727 ORTHO05D005788 2.6e-32 143.7 117 57.3
DCAR_024607 Daucus carota HOM05D004727 ORTHO05D005788 4.5e-32 142.9 142 49.3
DCAR_008880 Daucus carota HOM05D001628 ORTHO05D001568 1.7e-31 141.0 116 53.4
SEGI_30519 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 8.8e-28 128.6 108 50.9
arahy.Tifrunner.gnm1.ann1.FZN7A9 Arachis hypogaea HOM05D004727 ORTHO05D005788 3.3e-27 126.7 171 42.7
Actinidia31841 Actinidia chinensis HOM05D004727 ORTHO05D005788 6.3e-26 122.5 163 44.2
Mapoly1114s0001 Marchantia polymorpha HOM05D004727 ORTHO05D005788 5.9e-24 115.9 90 54.4
EL10Ac4g07580 Beta vulgaris HOM05D004727 ORTHO05D005788 1.9e-22 110.9 109 48.6
FAN01G2810 Fragaria x ananassa HOM05D000427 ORTHO05D000386 1.7e-18 97.8 121 47.9
SEGI_06548 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 1.3e-15 88.2 76 48.7
Ciclev10006767m.g Citrus clementina HOM05D004727 ORTHO05D005788 9.4e-14 82.0 63 55.6
QL09p012777 Quercus lobata HOM05D004727 ORTHO05D005788 2.1e-13 80.9 120 41.7
TWI39G0716 Tripterygium wilfordii HOM05D001943 ORTHO05D001969 2.7e-13 80.5 72 48.6
MD14G1086700 Malus domestica HOM05D004727 ORTHO05D005788 3.9e-12 76.6 83 48.2
Ah.13g069170 Amaranthus hybridus HOM05D004727 ORTHO05D005788 6.7e-12 75.9 87 48.3
ECA233G3504 Erigeron canadensis HOM05D004727 ORTHO05D005788 3.1e-09 67.0 137 29.2
SHI13754 Sapria himalayana HOM05D004727 ORTHO05D005788 7.7e-08 62.4 106 31.1
Hund04787 Selenicereus undatus HOM05D021542 ORTHO05D383482 4.2e-06 56.6 190 28.4


User provided reference genes

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