Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_4240 Physcomitrium patens HOM05D006588 ORTHO05D008272 5.6e-301 1036.9 575 100.0
Pp3c2_16400 Physcomitrium patens HOM05D006588 ORTHO05D008272 1.2e-178 630.6 574 59.6
Pp3c1_20980 Physcomitrium patens HOM05D006588 ORTHO05D008272 3.3e-176 622.5 572 59.4
Mapoly0029s0113 Marchantia polymorpha HOM05D006588 ORTHO05D008272 4.6e-93 346.3 412 47.3
Mapoly0117s0028 Marchantia polymorpha HOM05D006588 ORTHO05D008272 2.5e-91 340.5 409 44.0
Pp3c13_20140 Physcomitrium patens HOM05D006588 ORTHO05D008272 2.9e-87 327.0 555 37.5
Pp3c21_900 Physcomitrium patens HOM05D006588 ORTHO05D008272 1.9e-83 314.3 569 34.8
Pp3c4_15950 Physcomitrium patens HOM05D006588 ORTHO05D008272 7.3e-83 312.4 563 34.6
Pp3c18_21550 Physcomitrium patens HOM05D006588 ORTHO05D008272 9.6e-75 285.4 405 40.0
Pp3c19_6110 Physcomitrium patens HOM05D006588 ORTHO05D008272 1.4e-73 281.6 435 39.1
Mapoly0117s0029 Marchantia polymorpha HOM05D006588 ORTHO05D008272 1.8e-73 281.2 407 39.1
Pp3c22_1680 Physcomitrium patens HOM05D006588 ORTHO05D008272 3.0e-68 263.8 412 37.1
Pp3c21_1000 Physcomitrium patens HOM05D006588 ORTHO05D008272 1.1e-59 235.3 441 34.9
Pp3c21_980 Physcomitrium patens HOM05D006588 ORTHO05D008272 3.1e-57 227.3 293 42.0
SEGI_25649 Sequoiadendron giganteum HOM05D006588 ORTHO05D008272 2.5e-46 191.0 404 30.2
Pp3c21_1020 Physcomitrium patens HOM05D006588 ORTHO05D008272 2.4e-33 147.9 192 40.6
AagrBONN_evm.TU.Sc2ySwM_228.3249 Anthoceros agrestis HOM05D006588 ORTHO05D008272 3.8e-31 140.6 439 26.2
MBI04_g06220_MAGBIO Magnolia biondii HOM05D006588 ORTHO05D008272 5.7e-27 126.7 361 27.7
Thecc.09G094100 Theobroma cacao HOM05D006588 ORTHO05D008272 3.7e-26 124.0 387 26.1
Lj4C316T0 Lonicera japonica HOM05D006588 ORTHO05D008272 6.3e-26 123.2 395 24.8
Lj4g0006334 Lotus japonicus HOM05D006588 ORTHO05D008272 6.3e-26 123.2 401 23.9
CANSAT56G3648 Cannabis sativa HOM05D006588 ORTHO05D008272 8.2e-26 122.9 363 24.2
CANSAT56G0790 Cannabis sativa HOM05D006588 ORTHO05D008272 1.4e-25 122.1 363 24.2
Dinv36733 Davidia involucrata HOM05D006588 ORTHO05D008272 1.4e-25 122.1 369 24.9
CANSAT56G2228 Cannabis sativa HOM05D006588 ORTHO05D008272 4.1e-25 120.6 363 24.0
TAR636G2459 Trochodendron aralioides HOM05D006588 ORTHO05D008272 7.0e-25 119.8 390 23.6
Nn6g35407 Nelumbo nucifera HOM05D006588 ORTHO05D008272 1.2e-24 119.0 367 24.5
CDE06G2665 Ceratophyllum demersum HOM05D006588 ORTHO05D008272 2.6e-24 117.9 355 23.9
Duzib150G1363 Durio zibethinus HOM05D006588 ORTHO05D008272 3.5e-24 117.5 386 25.4
VMungo0251G0425 Vigna mungo HOM05D006588 ORTHO05D008272 3.5e-24 117.5 375 24.3
MSTRG.10583 Avicennia marina HOM05D006588 ORTHO05D008272 1.0e-23 115.9 357 23.8
Manes.03G030400 Manihot esculenta HOM05D006588 ORTHO05D008272 1.3e-23 115.5 357 24.1
Phvul.002G305400 Phaseolus vulgaris HOM05D006588 ORTHO05D008272 1.7e-23 115.2 397 23.2
Psat7g018800 Pisum sativum HOM05D006588 ORTHO05D008272 2.9e-23 114.4 403 24.6
Ciclev10008264m.g Citrus clementina HOM05D006588 ORTHO05D008272 1.1e-22 112.5 362 23.8
Lalb_Chr09g0331761 Lupinus albus HOM05D006588 ORTHO05D008272 1.1e-22 112.5 402 23.9
Hma1.2p1_1074F.1_g254320 Hydrangea macrophylla HOM05D006588 ORTHO05D008272 1.5e-22 112.1 355 23.9
unitig_699.g19309 Utricularia gibba HOM05D006588 ORTHO05D008272 4.2e-22 110.5 362 22.7
Atru.chr7.1520 Acer truncatum HOM05D006588 ORTHO05D008272 5.5e-22 110.2 397 24.2
TWI34G1517 Tripterygium wilfordii HOM05D006588 ORTHO05D008272 7.2e-22 109.8 379 25.6
SalBow1G2363 Salvia bowleyana HOM05D006588 ORTHO05D008272 9.4e-22 109.4 395 23.3
SalBow1G2795 Salvia bowleyana HOM05D006588 ORTHO05D008272 9.4e-22 109.4 395 23.3
AT4G29420 Arabidopsis thaliana HOM05D006588 ORTHO05D008272 1.2e-21 109.0 375 24.0
Glyma.08G030700 Glycine max HOM05D006588 ORTHO05D008272 1.2e-21 109.0 396 22.7
CSS0027625 Camellia sinensis var. sinensis HOM05D006588 ORTHO05D008272 1.6e-21 108.6 392 23.0
Sc15g0003870 Simmondsia chinensis HOM05D006588 ORTHO05D008272 1.6e-21 108.6 364 24.5
ATR0789G046 Amborella trichopoda HOM05D006588 ORTHO05D008272 4.7e-21 107.1 327 26.6
THA.LOC104814599 Tarenaya hassleriana HOM05D006588 ORTHO05D008272 6.1e-21 106.7 357 24.1
Migut.K00574 Erythranthe guttata HOM05D006588 ORTHO05D008272 8.0e-21 106.3 370 22.4
Gohir.D06G069300 Gossypium hirsutum HOM05D006588 ORTHO05D008272 1.4e-20 105.5 355 23.7
Gorai.010G080900 Gossypium raimondii HOM05D006588 ORTHO05D008272 1.4e-20 105.5 355 23.7
CARHR237240 Cardamine hirsuta HOM05D006588 ORTHO05D008272 2.3e-20 104.8 306 25.5
HPP92_003983 Vanilla planifolia HOM05D006588 ORTHO05D008272 3.0e-20 104.4 372 23.9
Ca_17389_v3 Cicer arietinum L. HOM05D006588 ORTHO05D008272 4.0e-20 104.0 401 21.9
ECA240G3150 Erigeron canadensis HOM05D006588 ORTHO05D008272 8.8e-20 102.8 393 21.9
TPR.G25442 Trifolium pratense HOM05D006588 ORTHO05D008272 2.0e-19 101.7 402 23.1
Rhsim05G0031800 Rhododendron simsii HOM05D006588 ORTHO05D008272 2.6e-19 101.3 390 23.6
Medtr8g101930 Medicago truncatula HOM05D006588 ORTHO05D008272 3.3e-19 100.9 407 23.3
Cc06_g10980 Coffea canephora HOM05D006588 ORTHO05D008272 1.3e-18 99.0 370 23.8
Sp7g27300 Schrenkiella parvula HOM05D006588 ORTHO05D008272 1.3e-18 99.0 229 27.5
QL02p063459 Quercus lobata HOM05D006588 ORTHO05D008272 2.2e-18 98.2 376 25.0
Carub.0007s1112 Capsella rubella HOM05D006588 ORTHO05D008272 4.8e-18 97.1 310 24.5
CiPaw.03G219600 Carya illinoinensis HOM05D006588 ORTHO05D008272 4.8e-18 97.1 250 26.4
Aa31LG2G21010 Aethionema arabicum HOM05D006588 ORTHO05D008272 8.2e-18 96.3 342 24.6
C01p10080 Brassica napus HOM05D006588 ORTHO05D008272 8.2e-18 96.3 387 23.5
BolC1t00966H Brassica oleracea HOM05D006588 ORTHO05D008272 8.2e-18 96.3 387 23.3
HanXRQChr09g0238251 Helianthus annuus HOM05D006588 ORTHO05D008272 8.2e-18 96.3 395 22.5
AL7G22970 Arabidopsis lyrata HOM05D006588 ORTHO05D008272 1.1e-17 95.9 375 23.2
Lsat_1_v5_gn_7_39041 Lactuca sativa HOM05D006588 ORTHO05D008272 1.1e-17 95.9 361 21.9
Pp3s358_1 Physcomitrium patens HOM05D006588 ORTHO05D008272 1.8e-17 95.1 127 37.0
Thhalv10025196m.g Eutrema salsugineum HOM05D006588 ORTHO05D008272 3.1e-17 94.4 309 23.9
BraA01t00812Z Brassica rapa HOM05D006588 ORTHO05D008272 5.3e-17 93.6 390 23.6
Cfa003132 Carpinus fangiana HOM05D006588 ORTHO05D008272 7.0e-17 93.2 341 22.9
Gohir.A06G070700 Gossypium hirsutum HOM05D006588 ORTHO05D008272 7.0e-17 93.2 247 26.3
Pp3s358_10 Physcomitrium patens HOM05D006588 ORTHO05D008272 7.0e-17 93.2 102 43.1
A01p08610 Brassica napus HOM05D006588 ORTHO05D008272 7.7e-16 89.7 225 27.6
ClCG11G012860 Citrullus lanatus HOM05D006588 ORTHO05D008272 7.7e-16 89.7 256 25.4
Eucgr.C00929 Eucalyptus grandis HOM05D006588 ORTHO05D008272 7.7e-16 89.7 351 24.8
Sed0004057 Sechium edule HOM05D006588 ORTHO05D008272 1.0e-15 89.4 254 27.2
CsaV3_5G029260 Cucumis sativus L. HOM05D006588 ORTHO05D008272 2.2e-15 88.2 252 24.2
Oeu018228.1 Olea europaea HOM05D006588 ORTHO05D008272 2.9e-15 87.8 376 21.5
Zm00001eb121140 Zea mays HOM05D006588 ORTHO05D008272 6.5e-15 86.7 208 29.3
Lsat_1_v5_gn_7_38040 Lactuca sativa HOM05D006588 ORTHO05D008272 4.2e-14 84.0 197 26.4
Os01g0193500 Oryza sativa ssp. japonica HOM05D006588 ORTHO05D008272 9.4e-14 82.8 214 27.1
vmacro10821 Vaccinium macrocarpon HOM05D006588 ORTHO05D008272 1.4e-12 79.0 430 21.6
Lsat_1_v5_gn_7_37981 Lactuca sativa HOM05D006588 ORTHO05D008272 3.0e-12 77.8 278 22.7
Lsat_1_v5_gn_7_38001 Lactuca sativa HOM05D006588 ORTHO05D008272 3.0e-12 77.8 278 22.7
SGA_v2.0_scaffold28G11949 Striga asiatica HOM05D006588 ORTHO05D008272 5.2e-12 77.0 390 22.1
Eucgr.L03123 Eucalyptus grandis HOM05D006588 ORTHO05D008272 1.5e-11 75.5 249 24.9
Lsat_1_v5_gn_7_38281 Lactuca sativa HOM05D006588 ORTHO05D008272 4.4e-11 73.9 225 24.0
Lsat_1_v5_gn_7_38780 Lactuca sativa HOM05D006588 ORTHO05D008272 2.4e-09 68.2 300 21.7
Rhsim05G0031700 Rhododendron simsii HOM05D006588 ORTHO05D008272 4.1e-09 67.4 143 31.5
CANSAT56G3251 Cannabis sativa HOM05D006588 ORTHO05D008272 9.1e-09 66.2 248 22.6
HanXRQChr03g0060671 Helianthus annuus HOM05D006588 ORTHO05D008272 7.7e-08 63.2 347 20.2
HanXRQChr03g0060961 Helianthus annuus HOM05D006588 ORTHO05D008272 1.0e-07 62.8 282 22.0
HanXRQChr03g0060681 Helianthus annuus HOM05D006588 ORTHO05D008272 1.7e-07 62.0 347 20.2
Haze_25873 Corylus avellana HOM05D006588 ORTHO05D008272 5.0e-07 60.5 266 21.8
Actinidia25278 Actinidia chinensis HOM05D006588 ORTHO05D008272 6.5e-07 60.1 126 27.0
Lsat_1_v5_gn_7_38020 Lactuca sativa HOM05D006588 ORTHO05D008272 1.5e-06 58.9 157 25.5
HanXRQChr05g0142321 Helianthus annuus HOM05D006588 ORTHO05D008272 3.2e-06 57.8 200 26.0
Nn7g36587 Nelumbo nucifera HOM05D006588 ORTHO05D008272 7.2e-06 56.6 119 30.3
Rhsim05G0031600 Rhododendron simsii HOM05D006588 ORTHO05D008272 7.2e-06 56.6 301 21.9


User provided reference genes

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