Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_4110 Physcomitrium patens HOM05D003626 ORTHO05D004255 0.0e+00 1900.9 992 100.0
Pp3c10_4090 Physcomitrium patens HOM05D003626 ORTHO05D004255 0.0e+00 1887.1 984 100.0
Mapoly0003s0245 Marchantia polymorpha HOM05D003626 ORTHO05D004255 5.2e-20 104.4 505 27.7
Dinv35227 Davidia involucrata HOM05D003626 ORTHO05D004255 1.9e-14 85.9 100 51.0
COL.COLO4_28044 Corchorus olitorius HOM05D003626 ORTHO05D004255 3.3e-14 85.1 99 50.5
TAR375G0013 Trochodendron aralioides HOM05D003626 ORTHO05D004255 3.3e-14 85.1 100 52.0
Cfa016262 Carpinus fangiana HOM05D003626 ORTHO05D004255 4.3e-14 84.7 130 43.8
Ciclev10006582m.g Citrus clementina HOM05D003626 ORTHO05D004255 4.3e-14 84.7 99 49.5
Actinidia25889 Actinidia chinensis HOM05D003626 ORTHO05D000962 5.6e-14 84.3 100 50.0
Thecc.03G180000 Theobroma cacao HOM05D003626 ORTHO05D004255 5.6e-14 84.3 150 36.7
Gohir.A12G256000 Gossypium hirsutum HOM05D003626 ORTHO05D004255 9.5e-14 83.6 99 50.5
Manes.06G149800 Manihot esculenta HOM05D003626 ORTHO05D004255 9.5e-14 83.6 99 50.5
Nn6g33408 Nelumbo nucifera HOM05D003626 ORTHO05D004255 9.5e-14 83.6 100 50.0
Sabra15G0155500 Salix brachista HOM05D003626 ORTHO05D004255 2.1e-13 82.4 264 32.6
arahy.Tifrunner.gnm1.ann1.DJI5YQ Arachis hypogaea HOM05D003626 ORTHO05D004255 2.8e-13 82.0 99 47.5
Gohir.D08G110300 Gossypium hirsutum HOM05D003626 ORTHO05D004255 2.8e-13 82.0 99 49.5
Haze_00014 Corylus avellana HOM05D003626 ORTHO05D004255 3.6e-13 81.6 99 48.5
Gohir.D12G257400 Gossypium hirsutum HOM05D003626 ORTHO05D004255 3.6e-13 81.6 99 49.5
Gorai.008G275600 Gossypium raimondii HOM05D003626 ORTHO05D004255 3.6e-13 81.6 99 49.5
Nn1g01542 Nelumbo nucifera HOM05D003626 ORTHO05D004255 3.6e-13 81.6 100 47.0
CSS0037833 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 4.7e-13 81.3 99 49.5
DCAR_020260 Daucus carota HOM05D003626 ORTHO05D004255 4.7e-13 81.3 162 38.3
Glyma.16G181700 Glycine max HOM05D003626 ORTHO05D004255 4.7e-13 81.3 99 50.5
HanXRQChr14g0462361 Helianthus annuus HOM05D003626 ORTHO05D004255 4.7e-13 81.3 88 51.1
TAR629G0048 Trochodendron aralioides HOM05D003626 ORTHO05D004255 4.7e-13 81.3 100 50.0
TAR636G1367 Trochodendron aralioides HOM05D003626 ORTHO05D004255 4.7e-13 81.3 100 49.0
arahy.Tifrunner.gnm1.ann1.TX8CZR Arachis hypogaea HOM05D003626 ORTHO05D004255 6.2e-13 80.9 99 46.5
Gorai.004G117900 Gossypium raimondii HOM05D003626 ORTHO05D004255 6.2e-13 80.9 163 38.0
Psat6g197120 Pisum sativum HOM05D003626 ORTHO05D004255 6.2e-13 80.9 182 37.4
TPR.G26995 Trifolium pratense HOM05D003626 ORTHO05D004255 6.2e-13 80.9 99 49.5
Atru.chr1.420 Acer truncatum HOM05D003626 ORTHO05D004255 8.1e-13 80.5 99 48.5
Ah.07g206910 Amaranthus hybridus HOM05D003626 ORTHO05D004255 8.1e-13 80.5 166 37.3
CsaV3_3G017260 Cucumis sativus L. HOM05D003626 ORTHO05D004255 8.1e-13 80.5 99 47.5
Duzib084G0771 Durio zibethinus HOM05D003626 ORTHO05D004255 8.1e-13 80.5 165 37.6
Medtr1g100810 Medicago truncatula HOM05D003626 ORTHO05D004255 8.1e-13 80.5 99 49.5
Phvul.007G072400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 8.1e-13 80.5 87 52.9
Prupe.2G297500 Prunus persica HOM05D003626 ORTHO05D004255 8.1e-13 80.5 194 34.0
Rhsim03G0188200 Rhododendron simsii HOM05D003626 ORTHO05D004255 8.1e-13 80.5 176 34.7
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 8.1e-13 80.5 172 37.2
DCAR_029574 Daucus carota HOM05D003626 ORTHO05D004255 1.1e-12 80.1 84 52.4
Duzib068G0520 Durio zibethinus HOM05D003626 ORTHO05D004255 1.1e-12 80.1 99 49.5
Manes.14G024700 Manihot esculenta HOM05D003626 ORTHO05D004255 1.1e-12 80.1 281 31.7
Phvul.004G113400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 1.1e-12 80.1 99 46.5
Lj1C1001T6 Lonicera japonica HOM05D003626 ORTHO05D004255 1.4e-12 79.7 177 36.7
GSVIVG01028908001 Vitis vinifera HOM05D003626 ORTHO05D004255 1.4e-12 79.7 258 32.9
Duzib205G1576 Durio zibethinus HOM05D003626 ORTHO05D004255 1.8e-12 79.3 99 48.5
VMungo0720G1546 Vigna mungo HOM05D003626 ORTHO05D004255 1.8e-12 79.3 87 51.7
arahy.Tifrunner.gnm1.ann1.26FV7C Arachis hypogaea HOM05D003626 ORTHO05D004255 2.3e-12 79.0 89 51.7
arahy.Tifrunner.gnm1.ann1.7Y9ZSE Arachis hypogaea HOM05D003626 ORTHO05D004255 2.3e-12 79.0 89 51.7
Cpa.g.sc107.76 Carica papaya HOM05D003626 ORTHO05D004255 2.3e-12 79.0 197 33.0
Gohir.A08G098700 Gossypium hirsutum HOM05D003626 ORTHO05D004255 2.3e-12 79.0 99 48.5
TWI39G1025 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 2.3e-12 79.0 99 49.5
MELO3C006924.2 Cucumis melo HOM05D003626 ORTHO05D004255 3.1e-12 78.6 99 46.5
MD07G1273500 Malus domestica HOM05D003626 ORTHO05D004255 3.1e-12 78.6 99 49.5
Eucgr.E00978 Eucalyptus grandis HOM05D003626 ORTHO05D004255 4.0e-12 78.2 99 47.5
FAN03G0953 Fragaria x ananassa HOM05D003626 ORTHO05D004255 4.0e-12 78.2 99 49.5
SEGI_03018 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 4.0e-12 78.2 88 51.1
SEGI_20458 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 4.0e-12 78.2 88 51.1
Eucgr.A02765 Eucalyptus grandis HOM05D003626 ORTHO05D004255 5.2e-12 77.8 148 37.8
Eucgr.L00411 Eucalyptus grandis HOM05D003626 ORTHO05D004255 5.2e-12 77.8 99 47.5
Psat0s4127g0040 Pisum sativum HOM05D003626 ORTHO05D004255 5.2e-12 77.8 99 47.5
ATR0680G428 Amborella trichopoda HOM05D003626 ORTHO05D004255 6.8e-12 77.4 174 36.8
Dinv28414 Davidia involucrata HOM05D003626 ORTHO05D004255 6.8e-12 77.4 100 47.0
Lalb_Chr03g0034731 Lupinus albus HOM05D003626 ORTHO05D004255 6.8e-12 77.4 214 29.0
TPR.G8172 Trifolium pratense HOM05D003626 ORTHO05D004255 6.8e-12 77.4 99 47.5
CAN.G1175.16 Capsicum annuum HOM05D003626 ORTHO05D004255 8.9e-12 77.0 82 54.9
FvH4_7g29860 Fragaria vesca HOM05D003626 ORTHO05D004255 8.9e-12 77.0 99 48.5
FAN06G2167 Fragaria x ananassa HOM05D003626 ORTHO05D004255 8.9e-12 77.0 99 48.5
SMO347G0135 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 8.9e-12 77.0 170 36.5
CANSAT21G2257 Cannabis sativa HOM05D003626 ORTHO05D004255 1.2e-11 76.6 99 48.5
Hma1.2p1_0227F.1_g095920 Hydrangea macrophylla HOM05D003626 ORTHO05D004255 1.2e-11 76.6 166 34.9
MD01G1205100 Malus domestica HOM05D003626 ORTHO05D004255 1.2e-11 76.6 262 34.0
Oeu004107.1 Olea europaea HOM05D003626 ORTHO05D004255 1.2e-11 76.6 100 46.0
TWI14G0197 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 1.5e-11 76.3 172 36.0
EL10Ac3g05599 Beta vulgaris HOM05D003626 ORTHO05D004255 2.0e-11 75.9 100 46.0
Potri.015G146300 Populus trichocarpa HOM05D003626 ORTHO05D004255 2.0e-11 75.9 265 32.1
HPP92_001476 Vanilla planifolia HOM05D003626 ORTHO05D004255 2.0e-11 75.9 83 51.8
Glyma.10G233400 Glycine max HOM05D003626 ORTHO05D004255 2.6e-11 75.5 222 29.3
Sed0000543 Sechium edule HOM05D003626 ORTHO05D004255 2.6e-11 75.5 99 45.5
TWI23G0117 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 2.6e-11 75.5 220 32.3
A01p16870 Brassica napus HOM05D003626 ORTHO05D004255 3.4e-11 75.1 82 50.0
C01p21150 Brassica napus HOM05D003626 ORTHO05D004255 3.4e-11 75.1 84 48.8
CiPaw.05G264100 Carya illinoinensis HOM05D003626 ORTHO05D004255 3.4e-11 75.1 162 42.0
CDE06G1616 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 3.4e-11 75.1 164 34.1
Glyma.20G161000 Glycine max HOM05D003626 ORTHO05D004255 3.4e-11 75.1 200 32.5
PGR042G2663 Punica granatum HOM05D003626 ORTHO05D004255 3.4e-11 75.1 79 51.9
Lsat_1_v5_gn_9_55160 Lactuca sativa HOM05D003626 ORTHO05D004255 4.4e-11 74.7 100 45.0
Nitab4.5_0000080g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 4.4e-11 74.7 83 49.4
Nitab4.5_0001951g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 4.4e-11 74.7 83 49.4
PGR142G2556 Punica granatum HOM05D003626 ORTHO05D004255 4.4e-11 74.7 99 44.4
SalBow4G0890 Salvia bowleyana HOM05D003626 ORTHO05D004255 4.4e-11 74.7 97 47.4
Medtr6g053660 Medicago truncatula HOM05D003626 ORTHO05D004255 5.8e-11 74.3 99 46.5
Sopen03g004280 Solanum pennellii HOM05D003626 ORTHO05D004255 5.8e-11 74.3 100 49.0
BcaC06g32796 Brassica carinata HOM05D003626 ORTHO05D004255 7.6e-11 73.9 99 43.4
Carub.0007s1537 Capsella rubella HOM05D003626 ORTHO05D004255 7.6e-11 73.9 99 43.4
CDE02G1538 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 7.6e-11 73.9 204 30.9
Thhalv10024755m.g Eutrema salsugineum HOM05D003626 ORTHO05D004255 7.6e-11 73.9 96 44.8
AT4G25610 Arabidopsis thaliana HOM05D003626 ORTHO05D004255 9.9e-11 73.6 96 45.8
Peaxi162Scf00848g00116 Petunia axillaris HOM05D003626 ORTHO05D004255 9.9e-11 73.6 83 48.2
PGSC0003DMG400015791 Solanum tuberosum HOM05D003626 ORTHO05D004255 9.9e-11 73.6 100 50.0
BraA03t14686Z Brassica rapa HOM05D003626 ORTHO05D004255 1.3e-10 73.2 99 42.4
Peaxi162Scf00444g00425 Petunia axillaris HOM05D003626 ORTHO05D004255 1.3e-10 73.2 84 53.6
RcHm_v2.0_Chr1g0377821 Rosa chinensis HOM05D003626 ORTHO05D004255 1.3e-10 73.2 186 35.5
Aqoxy7G00296 Aquilegia oxysepala HOM05D003626 ORTHO05D004255 2.2e-10 72.4 182 34.1
BolC7t45931H Brassica oleracea HOM05D003626 ORTHO05D004255 2.2e-10 72.4 99 42.4
Potri.012G143200 Populus trichocarpa HOM05D003626 ORTHO05D004255 2.2e-10 72.4 275 30.2
Nitab4.5_0000084g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 2.9e-10 72.0 185 35.1
MSTRG.27103 Avicennia marina HOM05D003626 ORTHO05D004255 3.8e-10 71.6 97 45.4
C07p54460 Brassica napus HOM05D003626 ORTHO05D004255 3.8e-10 71.6 99 42.4
Lalb_Chr06g0161221 Lupinus albus HOM05D003626 ORTHO05D004255 3.8e-10 71.6 99 44.4
AUR62021157 Chenopodium quinoa HOM05D003626 ORTHO05D004255 4.9e-10 71.2 97 45.4
Ca_10741_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 4.9e-10 71.2 96 43.8
Cc02_g02700 Coffea canephora HOM05D003626 ORTHO05D004255 4.9e-10 71.2 88 50.0
Lj2g0008392 Lotus japonicus HOM05D003626 ORTHO05D004255 4.9e-10 71.2 99 43.4
Sc19g0001390 Simmondsia chinensis HOM05D003626 ORTHO05D004255 4.9e-10 71.2 148 46.6
AL7G27480 Arabidopsis lyrata HOM05D003626 ORTHO05D004255 8.4e-10 70.5 96 42.7
PSO782G4415 Papaver somniferum HOM05D003626 ORTHO05D004255 8.4e-10 70.5 100 45.0
BcaC09g50754 Brassica carinata HOM05D003626 ORTHO05D004255 1.1e-09 70.1 79 48.1
Nitab4.5_0004439g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 1.1e-09 70.1 185 34.6
A03p56130 Brassica napus HOM05D003626 ORTHO05D004255 1.4e-09 69.7 236 29.7
Solyc03g025440.3 Solanum lycopersicum HOM05D003626 ORTHO05D004255 1.4e-09 69.7 201 34.8
AUR62015951 Chenopodium quinoa HOM05D003626 ORTHO05D004255 1.9e-09 69.3 148 44.6
ECA238G3668 Erigeron canadensis HOM05D003626 ORTHO05D004255 1.9e-09 69.3 205 36.1
MSTRG.82 Avicennia marina HOM05D003626 ORTHO05D004255 2.4e-09 68.9 197 35.5
Oeu061653.1 Olea europaea HOM05D003626 ORTHO05D004255 2.4e-09 68.9 192 38.5
Sp7g23640 Schrenkiella parvula HOM05D003626 ORTHO05D004255 2.4e-09 68.9 97 41.2
Zm00001eb095880 Zea mays HOM05D003626 ORTHO05D004255 2.4e-09 68.9 152 33.6
SGA_v2.0_scaffold60G21078 Striga asiatica HOM05D003626 ORTHO05D004255 3.2e-09 68.6 81 50.6
CARHR233030 Cardamine hirsuta HOM05D003626 ORTHO05D004255 4.1e-09 68.2 96 43.8
ECA233G2749 Erigeron canadensis HOM05D003626 ORTHO05D004255 4.1e-09 68.2 142 33.8
Lalb_Chr19g0130741 Lupinus albus HOM05D003626 ORTHO05D004255 4.1e-09 68.2 322 25.2
Lj5g0006318 Lotus japonicus HOM05D003626 ORTHO05D004255 7.1e-09 67.4 144 34.7
PSO478G3353 Papaver somniferum HOM05D003626 ORTHO05D004255 7.1e-09 67.4 203 31.0
VMungo0464G2114 Vigna mungo HOM05D003626 ORTHO05D002946 7.1e-09 67.4 106 39.6
Solyc06g036060.4 Solanum lycopersicum HOM05D003626 ORTHO05D004255 9.2e-09 67.0 88 46.6
THA.LOC104825103 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 9.2e-09 67.0 96 39.6
Aa31LG3G8800 Aethionema arabicum HOM05D003626 ORTHO05D004255 1.6e-08 66.2 96 41.7
HPP92_011473 Vanilla planifolia HOM05D003626 ORTHO05D004255 1.6e-08 66.2 83 49.4
Migut.F00325 Erythranthe guttata HOM05D003626 ORTHO05D004255 2.1e-08 65.9 167 42.5
Migut.F01102 Erythranthe guttata HOM05D003626 ORTHO05D004255 2.1e-08 65.9 78 47.4
Os09g0570200 Oryza sativa ssp. japonica HOM05D003626 ORTHO05D004255 2.1e-08 65.9 129 36.4
THA.LOC104811971 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 2.1e-08 65.9 96 40.6
BcaNung03703 Brassica carinata HOM05D003626 ORTHO05D004255 2.7e-08 65.5 79 45.6
Lalb_Chr02g0141141 Lupinus albus HOM05D003626 ORTHO05D004255 2.7e-08 65.5 342 26.9
Zm00001eb224460 Zea mays HOM05D003626 ORTHO05D004255 2.7e-08 65.5 152 31.6
Hund04768 Selenicereus undatus HOM05D003626 ORTHO05D004255 3.5e-08 65.1 100 40.0
ClCG05G008170 Citrullus lanatus HOM05D003626 ORTHO05D004255 1.7e-07 62.8 113 38.1
unitig_22.g5223 Utricularia gibba HOM05D003626 ORTHO05D004255 1.9e-06 59.3 187 29.9
Glyma.09G136202 Glycine max HOM05D003626 ORTHO05D004255 4.3e-06 58.2 67 50.7
Sopen06g011810 Solanum pennellii HOM05D003626 ORTHO05D004255 5.6e-06 57.8 168 35.1


User provided reference genes

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