Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_4090 Physcomitrium patens HOM05D003626 ORTHO05D004255 0.0e+00 2800.0 1461 100.0
Pp3c10_4110 Physcomitrium patens HOM05D003626 ORTHO05D004255 0.0e+00 1887.8 984 100.0
Mapoly0003s0245 Marchantia polymorpha HOM05D003626 ORTHO05D004255 4.8e-62 244.6 876 29.5
ATR0680G428 Amborella trichopoda HOM05D003626 ORTHO05D004255 1.8e-48 199.5 443 36.1
Nn1g01542 Nelumbo nucifera HOM05D003626 ORTHO05D004255 6.9e-45 187.6 355 36.9
SEGI_20458 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 4.5e-44 184.9 348 37.4
arahy.Tifrunner.gnm1.ann1.DJI5YQ Arachis hypogaea HOM05D003626 ORTHO05D004255 3.2e-42 178.7 207 47.8
arahy.Tifrunner.gnm1.ann1.TX8CZR Arachis hypogaea HOM05D003626 ORTHO05D004255 5.5e-42 177.9 207 47.3
Thecc.03G180000 Theobroma cacao HOM05D003626 ORTHO05D004255 9.3e-42 177.2 260 40.8
Lj1C1001T6 Lonicera japonica HOM05D003626 ORTHO05D004255 1.6e-41 176.4 287 42.5
GSVIVG01028908001 Vitis vinifera HOM05D003626 ORTHO05D004255 1.6e-41 176.4 368 37.8
BcaC06g32796 Brassica carinata HOM05D003626 ORTHO05D004255 2.1e-41 176.0 209 46.9
Actinidia25889 Actinidia chinensis HOM05D003626 ORTHO05D000962 2.7e-41 175.6 210 48.1
Rhsim03G0188200 Rhododendron simsii HOM05D003626 ORTHO05D004255 2.7e-41 175.6 286 39.5
HPP92_001476 Vanilla planifolia HOM05D003626 ORTHO05D004255 2.7e-41 175.6 377 36.9
Duzib205G1576 Durio zibethinus HOM05D003626 ORTHO05D004255 3.5e-41 175.3 209 47.4
BraA03t14686Z Brassica rapa HOM05D003626 ORTHO05D004255 6.1e-41 174.5 209 46.4
C07p54460 Brassica napus HOM05D003626 ORTHO05D004255 1.0e-40 173.7 209 46.4
Duzib068G0520 Durio zibethinus HOM05D003626 ORTHO05D004255 1.3e-40 173.3 209 47.8
Gohir.A12G256000 Gossypium hirsutum HOM05D003626 ORTHO05D004255 1.3e-40 173.3 209 47.4
BolC7t45931H Brassica oleracea HOM05D003626 ORTHO05D004255 1.8e-40 172.9 209 46.4
TAR636G1367 Trochodendron aralioides HOM05D003626 ORTHO05D004255 1.8e-40 172.9 240 45.8
Manes.06G149800 Manihot esculenta HOM05D003626 ORTHO05D004255 3.0e-40 172.2 209 47.8
SalBow4G0890 Salvia bowleyana HOM05D003626 ORTHO05D004255 3.9e-40 171.8 207 49.3
TAR629G0048 Trochodendron aralioides HOM05D003626 ORTHO05D004255 3.9e-40 171.8 210 49.5
HanXRQChr14g0462361 Helianthus annuus HOM05D003626 ORTHO05D004255 5.1e-40 171.4 210 47.6
Gorai.008G275600 Gossypium raimondii HOM05D003626 ORTHO05D004255 6.7e-40 171.0 209 46.9
DCAR_020260 Daucus carota HOM05D003626 ORTHO05D004255 8.7e-40 170.6 272 42.6
Gohir.D08G110300 Gossypium hirsutum HOM05D003626 ORTHO05D004255 8.7e-40 170.6 207 46.9
Nn6g33408 Nelumbo nucifera HOM05D003626 ORTHO05D004255 8.7e-40 170.6 210 48.1
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 1.1e-39 170.2 282 40.4
Gorai.004G117900 Gossypium raimondii HOM05D003626 ORTHO05D004255 1.5e-39 169.9 271 40.6
Gohir.D12G257400 Gossypium hirsutum HOM05D003626 ORTHO05D004255 2.5e-39 169.1 209 46.4
Manes.14G024700 Manihot esculenta HOM05D003626 ORTHO05D004255 3.3e-39 168.7 391 35.3
Cpa.g.sc107.76 Carica papaya HOM05D003626 ORTHO05D004255 4.3e-39 168.3 307 37.8
SMO347G0135 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 4.3e-39 168.3 303 39.6
Aqoxy7G00296 Aquilegia oxysepala HOM05D003626 ORTHO05D004255 5.7e-39 167.9 292 39.4
A03p56130 Brassica napus HOM05D003626 ORTHO05D004255 5.7e-39 167.9 346 35.8
CsaV3_3G017260 Cucumis sativus L. HOM05D003626 ORTHO05D004255 5.7e-39 167.9 207 46.9
Gohir.A08G098700 Gossypium hirsutum HOM05D003626 ORTHO05D004255 5.7e-39 167.9 207 46.4
Ah.07g206910 Amaranthus hybridus HOM05D003626 ORTHO05D004255 7.4e-39 167.5 276 39.5
arahy.Tifrunner.gnm1.ann1.26FV7C Arachis hypogaea HOM05D003626 ORTHO05D004255 7.4e-39 167.5 216 45.8
Phvul.004G113400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 9.7e-39 167.2 209 45.5
Phvul.007G072400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 9.7e-39 167.2 207 47.3
AT4G25610 Arabidopsis thaliana HOM05D003626 ORTHO05D004255 1.3e-38 166.8 206 47.1
Carub.0007s1537 Capsella rubella HOM05D003626 ORTHO05D004255 1.3e-38 166.8 209 45.9
arahy.Tifrunner.gnm1.ann1.7Y9ZSE Arachis hypogaea HOM05D003626 ORTHO05D004255 2.2e-38 166.0 216 45.4
MELO3C006924.2 Cucumis melo HOM05D003626 ORTHO05D004255 2.2e-38 166.0 207 46.4
Glyma.16G181700 Glycine max HOM05D003626 ORTHO05D004255 2.2e-38 166.0 216 44.4
EL10Ac3g05599 Beta vulgaris HOM05D003626 ORTHO05D004255 2.8e-38 165.6 210 45.7
C01p21150 Brassica napus HOM05D003626 ORTHO05D004255 3.7e-38 165.2 210 46.2
Dinv28414 Davidia involucrata HOM05D003626 ORTHO05D004255 3.7e-38 165.2 210 46.2
Duzib084G0771 Durio zibethinus HOM05D003626 ORTHO05D004255 3.7e-38 165.2 275 40.7
Lsat_1_v5_gn_9_55160 Lactuca sativa HOM05D003626 ORTHO05D004255 3.7e-38 165.2 211 46.4
Psat6g197120 Pisum sativum HOM05D003626 ORTHO05D004255 3.7e-38 165.2 290 38.6
TWI39G1025 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 3.7e-38 165.2 207 46.9
Atru.chr1.420 Acer truncatum HOM05D003626 ORTHO05D004255 4.8e-38 164.9 208 45.7
RcHm_v2.0_Chr1g0377821 Rosa chinensis HOM05D003626 ORTHO05D004255 4.8e-38 164.9 294 40.1
Sp7g23640 Schrenkiella parvula HOM05D003626 ORTHO05D004255 6.3e-38 164.5 207 44.4
VMungo0720G1546 Vigna mungo HOM05D003626 ORTHO05D004255 6.3e-38 164.5 207 46.4
Prupe.2G297500 Prunus persica HOM05D003626 ORTHO05D004255 1.1e-37 163.7 302 37.7
MSTRG.27103 Avicennia marina HOM05D003626 ORTHO05D004255 1.4e-37 163.3 207 46.9
Thhalv10024755m.g Eutrema salsugineum HOM05D003626 ORTHO05D004255 1.8e-37 162.9 206 45.1
TAR375G0013 Trochodendron aralioides HOM05D003626 ORTHO05D004255 1.8e-37 162.9 201 48.3
AL7G27480 Arabidopsis lyrata HOM05D003626 ORTHO05D004255 2.4e-37 162.5 206 46.1
FAN03G0953 Fragaria x ananassa HOM05D003626 ORTHO05D004255 2.4e-37 162.5 209 46.9
FvH4_7g29860 Fragaria vesca HOM05D003626 ORTHO05D004255 3.1e-37 162.2 207 46.9
Medtr1g100810 Medicago truncatula HOM05D003626 ORTHO05D004255 3.1e-37 162.2 209 45.5
Sed0000543 Sechium edule HOM05D003626 ORTHO05D004255 3.1e-37 162.2 207 45.9
TPR.G26995 Trifolium pratense HOM05D003626 ORTHO05D004255 3.1e-37 162.2 207 45.4
Lalb_Chr03g0034731 Lupinus albus HOM05D003626 ORTHO05D004255 4.1e-37 161.8 324 34.9
CANSAT21G2257 Cannabis sativa HOM05D003626 ORTHO05D004255 9.0e-37 160.6 204 45.6
Hma1.2p1_0227F.1_g095920 Hydrangea macrophylla HOM05D003626 ORTHO05D004255 9.0e-37 160.6 290 38.3
Cc02_g02700 Coffea canephora HOM05D003626 ORTHO05D004255 1.2e-36 160.2 208 45.7
Dinv35227 Davidia involucrata HOM05D003626 ORTHO05D004255 1.5e-36 159.8 196 46.4
ECA233G2749 Erigeron canadensis HOM05D003626 ORTHO05D004255 1.5e-36 159.8 276 38.8
BcaC09g50754 Brassica carinata HOM05D003626 ORTHO05D004255 2.0e-36 159.5 206 45.1
Ciclev10006582m.g Citrus clementina HOM05D003626 ORTHO05D004255 2.0e-36 159.5 207 44.9
Sabra15G0155500 Salix brachista HOM05D003626 ORTHO05D004255 2.6e-36 159.1 374 34.2
CDE06G1616 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 3.4e-36 158.7 274 37.6
MD07G1273500 Malus domestica HOM05D003626 ORTHO05D004255 3.4e-36 158.7 207 45.9
Potri.012G143200 Populus trichocarpa HOM05D003626 ORTHO05D004255 3.4e-36 158.7 385 33.5
Potri.015G146300 Populus trichocarpa HOM05D003626 ORTHO05D004255 3.4e-36 158.7 375 34.9
Glyma.10G233400 Glycine max HOM05D003626 ORTHO05D004255 4.5e-36 158.3 342 33.6
Nitab4.5_0001951g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 4.5e-36 158.3 210 43.8
TWI23G0117 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 4.5e-36 158.3 328 35.7
Oeu004107.1 Olea europaea HOM05D003626 ORTHO05D004255 5.9e-36 157.9 242 43.4
THA.LOC104825103 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 5.9e-36 157.9 204 45.6
AUR62021157 Chenopodium quinoa HOM05D003626 ORTHO05D004255 7.7e-36 157.5 207 44.9
Nitab4.5_0000080g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 7.7e-36 157.5 210 43.8
TPR.G8172 Trifolium pratense HOM05D003626 ORTHO05D004255 7.7e-36 157.5 216 42.6
Aa31LG3G8800 Aethionema arabicum HOM05D003626 ORTHO05D004255 1.0e-35 157.1 204 45.1
Glyma.20G161000 Glycine max HOM05D003626 ORTHO05D004255 1.0e-35 157.1 322 35.7
Zm00001eb095880 Zea mays HOM05D003626 ORTHO05D004255 1.3e-35 156.8 291 36.8
PGR042G2663 Punica granatum HOM05D003626 ORTHO05D004255 1.7e-35 156.4 209 44.0
CARHR233030 Cardamine hirsuta HOM05D003626 ORTHO05D004255 2.2e-35 156.0 206 44.7
DCAR_029574 Daucus carota HOM05D003626 ORTHO05D004255 2.2e-35 156.0 207 45.4
Ca_10741_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 2.9e-35 155.6 206 43.2
Cfa016262 Carpinus fangiana HOM05D003626 ORTHO05D004255 3.8e-35 155.2 229 42.8
THA.LOC104811971 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 3.8e-35 155.2 203 45.3
Psat0s4127g0040 Pisum sativum HOM05D003626 ORTHO05D004255 5.0e-35 154.8 216 42.6
Oeu061653.1 Olea europaea HOM05D003626 ORTHO05D004255 6.5e-35 154.5 414 35.5
Sc19g0001390 Simmondsia chinensis HOM05D003626 ORTHO05D004255 6.5e-35 154.5 277 44.4
A01p16870 Brassica napus HOM05D003626 ORTHO05D004255 1.4e-34 153.3 209 44.0
ECA238G3668 Erigeron canadensis HOM05D003626 ORTHO05D004255 1.4e-34 153.3 327 38.5
Os09g0570200 Oryza sativa ssp. japonica HOM05D003626 ORTHO05D004255 1.4e-34 153.3 239 41.4
Eucgr.L00411 Eucalyptus grandis HOM05D003626 ORTHO05D004255 1.9e-34 152.9 200 44.0
Lalb_Chr02g0141141 Lupinus albus HOM05D003626 ORTHO05D004255 1.9e-34 152.9 450 31.1
BcaNung03703 Brassica carinata HOM05D003626 ORTHO05D004255 3.2e-34 152.1 206 44.2
SGA_v2.0_scaffold60G21078 Striga asiatica HOM05D003626 ORTHO05D004255 4.2e-34 151.8 208 43.8
Medtr6g053660 Medicago truncatula HOM05D003626 ORTHO05D004255 5.5e-34 151.4 231 42.0
MD01G1205100 Malus domestica HOM05D003626 ORTHO05D004255 7.2e-34 151.0 370 36.2
MSTRG.82 Avicennia marina HOM05D003626 ORTHO05D004255 9.4e-34 150.6 307 38.1
CiPaw.05G264100 Carya illinoinensis HOM05D003626 ORTHO05D004255 9.4e-34 150.6 273 41.4
PGR142G2556 Punica granatum HOM05D003626 ORTHO05D004255 9.4e-34 150.6 209 43.5
VMungo0464G2114 Vigna mungo HOM05D003626 ORTHO05D002946 2.1e-33 149.4 216 41.7
CAN.G1175.16 Capsicum annuum HOM05D003626 ORTHO05D004255 2.7e-33 149.1 207 45.4
Eucgr.A02765 Eucalyptus grandis HOM05D003626 ORTHO05D004255 2.7e-33 149.1 244 38.9
Sopen03g004280 Solanum pennellii HOM05D003626 ORTHO05D004255 2.7e-33 149.1 208 46.2
Lalb_Chr19g0130741 Lupinus albus HOM05D003626 ORTHO05D004255 3.6e-33 148.7 449 29.2
Lj2g0008392 Lotus japonicus HOM05D003626 ORTHO05D004255 6.1e-33 147.9 216 40.3
PGSC0003DMG400015791 Solanum tuberosum HOM05D003626 ORTHO05D004255 6.1e-33 147.9 207 45.4
Lalb_Chr06g0161221 Lupinus albus HOM05D003626 ORTHO05D004255 7.9e-33 147.5 209 43.1
Migut.F01102 Erythranthe guttata HOM05D003626 ORTHO05D004255 1.4e-32 146.7 208 44.2
ClCG05G008170 Citrullus lanatus HOM05D003626 ORTHO05D004255 2.3e-32 146.0 227 41.0
Hund04768 Selenicereus undatus HOM05D003626 ORTHO05D004255 2.3e-32 146.0 207 42.5
Solyc06g036060.4 Solanum lycopersicum HOM05D003626 ORTHO05D004255 2.3e-32 146.0 207 43.5
PSO478G3353 Papaver somniferum HOM05D003626 ORTHO05D004255 3.0e-32 145.6 313 36.4
TWI14G0197 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 3.9e-32 145.2 268 37.3
Lj5g0006318 Lotus japonicus HOM05D003626 ORTHO05D004255 6.7e-32 144.4 250 36.8
Solyc03g025440.3 Solanum lycopersicum HOM05D003626 ORTHO05D004255 6.7e-32 144.4 309 37.9
Peaxi162Scf00444g00425 Petunia axillaris HOM05D003626 ORTHO05D004255 1.1e-31 143.7 208 46.2
FAN06G2167 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.5e-31 143.3 209 43.5
Peaxi162Scf00848g00116 Petunia axillaris HOM05D003626 ORTHO05D004255 5.7e-31 141.4 212 40.1
PSO782G4415 Papaver somniferum HOM05D003626 ORTHO05D004255 9.7e-31 140.6 342 34.5
AagrBONN_evm.TU.Sc2ySwM_344.1743 Anthoceros agrestis HOM05D003626 ORTHO05D004255 2.8e-30 139.0 431 30.9
Sopen06g011810 Solanum pennellii HOM05D003626 ORTHO05D004255 2.8e-30 139.0 287 38.0
Nitab4.5_0004439g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 8.2e-30 137.5 304 35.9
AUR62015951 Chenopodium quinoa HOM05D003626 ORTHO05D004255 4.1e-29 135.2 330 37.0
FAN01G0376 Fragaria x ananassa HOM05D003626 ORTHO05D004255 6.9e-29 134.4 200 42.0
FAN03G3125 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.5e-28 133.3 251 38.2
FAN10G0313 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.5e-28 133.3 197 42.6
FAN10G2476 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.5e-28 133.3 197 42.6
unitig_0.g459 Utricularia gibba HOM05D003626 ORTHO05D004255 8.5e-27 127.5 298 35.2
COL.COLO4_28044 Corchorus olitorius HOM05D003626 ORTHO05D004255 5.5e-26 124.8 162 46.3
Eucgr.E00978 Eucalyptus grandis HOM05D003626 ORTHO05D004255 5.5e-26 124.8 200 38.5
Haze_00014 Corylus avellana HOM05D003626 ORTHO05D004255 1.2e-25 123.6 169 43.2
Sabra12G0107600 Salix brachista HOM05D003626 ORTHO05D004255 4.7e-25 121.7 346 31.8
Migut.F00325 Erythranthe guttata HOM05D003626 ORTHO05D004255 3.9e-24 118.6 279 40.9
unitig_22.g5223 Utricularia gibba HOM05D003626 ORTHO05D004255 8.8e-24 117.5 297 33.0
Sc13g0008850 Simmondsia chinensis HOM05D003626 ORTHO05D004255 2.0e-23 116.3 338 32.8
SEGI_33334 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 7.4e-23 114.4 254 33.1
Nitab4.5_0000084g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 1.7e-22 113.2 304 33.2
Sed0014313 Sechium edule HOM05D003626 ORTHO05D004255 8.2e-22 110.9 183 38.3
SMO356G0700 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 1.0e-19 104.0 203 36.5
CDE02G1538 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 4.7e-17 95.1 235 31.1
CSS0037833 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 6.1e-17 94.7 138 43.5
Zm00001eb224460 Zea mays HOM05D003626 ORTHO05D004255 2.4e-13 82.8 166 33.7
SEGI_03018 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 5.9e-12 78.2 88 51.1
FAN06G1666 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.9e-10 73.2 119 39.5
CSS0041965 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 9.4e-10 70.9 71 53.5
AagrBONN_evm.TU.Sc2ySwM_362.2615 Anthoceros agrestis HOM05D003626 ORTHO05D004255 8.0e-09 67.8 274 28.5
HPP92_011473 Vanilla planifolia HOM05D003626 ORTHO05D004255 1.8e-08 66.6 83 49.4
Glyma.09G136202 Glycine max HOM05D003626 ORTHO05D004255 6.3e-06 58.2 67 50.7


User provided reference genes

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