Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_3490 Physcomitrium patens HOM05D007510 ORTHO05D009587 3.7e-140 501.5 252 100.0
Mapoly0025s0056 Marchantia polymorpha HOM05D007510 ORTHO05D009587 2.5e-11 73.6 49 55.1
SEGI_27269 Sequoiadendron giganteum HOM05D007510 ORTHO05D009587 2.1e-10 70.5 42 61.9
Nn6g32199 Nelumbo nucifera HOM05D007510 ORTHO05D009587 8.1e-10 68.6 63 49.2
Actinidia26112 Actinidia chinensis HOM05D007510 ORTHO05D009587 5.2e-09 65.9 65 46.2
arahy.Tifrunner.gnm1.ann1.X6BQPF Arachis hypogaea HOM05D007510 ORTHO05D009587 8.9e-09 65.1 35 68.6
Glyma.02G052200 Glycine max HOM05D007510 ORTHO05D009587 1.2e-08 64.7 42 61.9
Nitab4.5_0012525g0020 Nicotiana tabacum HOM05D007510 ORTHO05D009587 1.2e-08 64.7 45 53.3
vmacro22104 Vaccinium macrocarpon HOM05D007510 ORTHO05D009587 1.5e-08 64.3 45 55.6
AagrBONN_evm.TU.Sc2ySwM_228.2268 Anthoceros agrestis HOM05D007510 ORTHO05D009587 2.0e-08 63.9 69 44.9
MELO3C007880.2 Cucumis melo HOM05D007510 ORTHO05D009587 2.0e-08 63.9 87 40.2
AagrBONN_evm.TU.Sc2ySwM_368.2258 Anthoceros agrestis HOM05D007510 ORTHO05D009587 2.6e-08 63.5 62 45.2
BcaNung00409 Brassica carinata HOM05D007510 ORTHO05D009587 2.6e-08 63.5 62 46.8
HanXRQChr11g0325681 Helianthus annuus HOM05D007510 ORTHO05D009587 2.6e-08 63.5 34 70.6
HanXRQChr15g0494821 Helianthus annuus HOM05D007510 ORTHO05D009587 2.6e-08 63.5 63 44.4
PGR102G2493 Punica granatum HOM05D007510 ORTHO05D009587 2.6e-08 63.5 80 42.5
Lsat_1_v5_gn_4_151140 Lactuca sativa HOM05D007510 ORTHO05D009587 3.4e-08 63.2 34 70.6
CsaV3_6G046830 Cucumis sativus L. HOM05D007510 ORTHO05D009587 4.4e-08 62.8 34 70.6
ECA232G0818 Erigeron canadensis HOM05D001094 ORTHO05D001050 4.4e-08 62.8 74 39.2
BcaB08g36792 Brassica carinata HOM05D007510 ORTHO05D009587 7.6e-08 62.0 64 42.2
Rhsim08G0036700 Rhododendron simsii HOM05D007510 ORTHO05D009587 7.6e-08 62.0 33 72.7
Nn5g29177 Nelumbo nucifera HOM05D007510 ORTHO05D009587 9.9e-08 61.6 46 56.5
Sp6g26950 Schrenkiella parvula HOM05D007510 ORTHO05D009587 9.9e-08 61.6 58 50.0
CSS0038414 Camellia sinensis var. sinensis HOM05D007510 ORTHO05D009587 1.3e-07 61.2 35 68.6
Nitab4.5_0002266g0030 Nicotiana tabacum HOM05D007510 ORTHO05D009587 1.3e-07 61.2 63 42.9
Ah.02g124790 Amaranthus hybridus HOM05D007510 ORTHO05D009587 2.2e-07 60.5 55 49.1
CANSAT78G1864 Cannabis sativa HOM05D007510 ORTHO05D009587 2.2e-07 60.5 29 79.3
ClCG01G020060 Citrullus lanatus HOM05D007510 ORTHO05D000703 2.2e-07 60.5 81 42.0
Migut.H02491 Erythranthe guttata HOM05D007510 ORTHO05D009587 2.2e-07 60.5 82 42.7
Medtr8g076660 Medicago truncatula HOM05D007510 ORTHO05D009587 2.2e-07 60.5 35 65.7
TPR.G21530 Trifolium pratense HOM05D007510 ORTHO05D009587 2.2e-07 60.5 35 65.7
unitig_27.g25318 Utricularia gibba HOM05D007510 ORTHO05D009587 2.2e-07 60.5 30 73.3
Carub.0006s1547 Capsella rubella HOM05D007510 ORTHO05D009587 2.9e-07 60.1 53 50.9
Lalb_Chr05g0229951 Lupinus albus HOM05D007510 ORTHO05D009587 2.9e-07 60.1 35 65.7
BraA02t05372Z Brassica rapa HOM05D007510 ORTHO05D009587 3.7e-07 59.7 54 53.7
Os09g0530900 Oryza sativa ssp. japonica HOM05D007510 ORTHO05D009587 3.7e-07 59.7 30 76.7
HPP92_022284 Vanilla planifolia HOM05D007510 ORTHO05D009587 3.7e-07 59.7 45 53.3
HPP92_022401 Vanilla planifolia HOM05D007510 ORTHO05D009587 3.7e-07 59.7 45 53.3
HPP92_028382 Vanilla planifolia HOM05D007510 ORTHO05D009587 3.7e-07 59.7 33 66.7
Aa31LG1G14840 Aethionema arabicum HOM05D007510 ORTHO05D009587 4.9e-07 59.3 56 48.2
AL6G28360 Arabidopsis lyrata HOM05D007510 ORTHO05D009587 4.9e-07 59.3 30 73.3
AT5G17280 Arabidopsis thaliana HOM05D007510 ORTHO05D009587 6.4e-07 58.9 91 38.5
A10p22120 Brassica napus HOM05D007510 ORTHO05D009587 6.4e-07 58.9 57 45.6
BraA10t44271Z Brassica rapa HOM05D007510 ORTHO05D009587 6.4e-07 58.9 57 45.6
CiPaw.08G136300 Carya illinoinensis HOM05D007510 ORTHO05D009587 6.4e-07 58.9 30 73.3
Sc16g0002400 Simmondsia chinensis HOM05D007510 ORTHO05D009587 6.4e-07 58.9 51 51.0
TAR625G1319 Trochodendron aralioides HOM05D007510 ORTHO05D009587 6.4e-07 58.9 29 75.9
CiPaw.04G025800 Carya illinoinensis HOM05D007510 ORTHO05D009587 8.3e-07 58.5 60 48.3
Oeu037724.1 Olea europaea HOM05D007510 ORTHO05D009587 8.3e-07 58.5 69 37.7
CANSAT01G2887 Cannabis sativa HOM05D007510 ORTHO05D009587 1.1e-06 58.2 28 78.6
COL.COLO4_21980 Corchorus olitorius HOM05D001094 ORTHO05D001050 1.1e-06 58.2 74 40.5
Hma1.2p1_0266F.1_g107010 Hydrangea macrophylla HOM05D007510 ORTHO05D009587 1.1e-06 58.2 28 78.6
Oeu037725.1 Olea europaea HOM05D007510 ORTHO05D009587 1.1e-06 58.2 69 37.7
Aa31LG11G5850 Aethionema arabicum HOM05D007510 ORTHO05D009587 1.4e-06 57.8 57 45.6
SalBow5G2055 Salvia bowleyana HOM05D007510 ORTHO05D009587 1.4e-06 57.8 115 32.2
VMungo0251G3154 Vigna mungo HOM05D007510 ORTHO05D009587 1.4e-06 57.8 35 62.9
BcaC04g18811 Brassica carinata HOM05D007510 ORTHO05D009587 1.9e-06 57.4 58 46.6
C09p59910 Brassica napus HOM05D007510 ORTHO05D009587 1.9e-06 57.4 58 46.6
BolC9t58827H Brassica oleracea HOM05D007510 ORTHO05D009587 1.9e-06 57.4 58 46.6
Solyc02g084650.3 Solanum lycopersicum HOM05D007510 ORTHO05D009587 1.9e-06 57.4 45 48.9
Sopen02g029320 Solanum pennellii HOM05D007510 ORTHO05D009587 1.9e-06 57.4 45 48.9
PGSC0003DMG400003618 Solanum tuberosum HOM05D007510 ORTHO05D009587 1.9e-06 57.4 45 48.9
A02p04090 Brassica napus HOM05D007510 ORTHO05D009587 2.4e-06 57.0 62 41.9
Cfa006928 Carpinus fangiana HOM05D007510 ORTHO05D009587 2.4e-06 57.0 28 75.0
Psat4g096640 Pisum sativum HOM05D007510 ORTHO05D009587 2.4e-06 57.0 37 59.5
TWI09G1276 Tripterygium wilfordii HOM05D007510 ORTHO05D009587 2.4e-06 57.0 28 75.0
Aqoxy1G00866 Aquilegia oxysepala HOM05D007510 ORTHO05D009587 3.2e-06 56.6 28 75.0
CAN.G358.14 Capsicum annuum HOM05D007510 ORTHO05D009587 3.2e-06 56.6 48 45.8
Haze_03821 Corylus avellana HOM05D007510 ORTHO05D009587 3.2e-06 56.6 28 75.0
SGA_v2.0_scaffold280G46849 Striga asiatica HOM05D007510 ORTHO05D009587 3.2e-06 56.6 34 64.7
Ciclev10026716m.g Citrus clementina HOM05D007510 ORTHO05D009587 4.1e-06 56.2 60 46.7
Lj4g0024164 Lotus japonicus HOM05D007510 ORTHO05D009587 4.1e-06 56.2 35 60.0
AUR62007639 Chenopodium quinoa HOM05D007510 ORTHO05D009587 7.1e-06 55.5 46 52.2
QL06p034549 Quercus lobata HOM05D007510 ORTHO05D009587 7.1e-06 55.5 28 71.4
Thhalv10014934m.g Eutrema salsugineum HOM05D007510 ORTHO05D009587 9.2e-06 55.1 75 37.3


User provided reference genes

Program Settings