Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_2750 Physcomitrium patens HOM05D012277 ORTHO05D010483 7.0e-81 303.9 154 100.0
Pp3c10_2760 Physcomitrium patens HOM05D012277 ORTHO05D010483 7.0e-81 303.9 154 100.0
Pp3c2_27350 Physcomitrium patens HOM05D012277 ORTHO05D010483 6.4e-18 94.7 101 44.6
Pp3c7_19830 Physcomitrium patens HOM05D012277 ORTHO05D010483 4.6e-16 88.6 119 38.7
Pp3c7_19850 Physcomitrium patens HOM05D012277 ORTHO05D010483 4.6e-16 88.6 119 38.7
Pp3c1_10460 Physcomitrium patens HOM05D012277 ORTHO05D010483 2.5e-14 82.8 143 33.6
SMO141G0292 Selaginella moellendorffii HOM05D000322 ORTHO05D010483 7.3e-14 81.3 116 33.6
Pp3c17_11500 Physcomitrium patens HOM05D012277 ORTHO05D010483 2.8e-13 79.3 152 32.9
SMO332G0032 Selaginella moellendorffii HOM05D008409 ORTHO05D000186 4.0e-12 75.5 114 38.6
Pp3c13_23010 Physcomitrium patens HOM05D012277 ORTHO05D010483 1.2e-11 73.9 103 33.0
Pp3c13_23030 Physcomitrium patens HOM05D012277 ORTHO05D010483 1.2e-11 73.9 103 33.0
PGR119G0191 Punica granatum HOM05D000197 ORTHO05D000114 1.2e-11 73.9 144 31.2
Pp3c11_13210 Physcomitrium patens HOM05D012277 ORTHO05D010483 4.5e-11 72.0 108 34.3
AagrBONN_evm.TU.Sc2ySwM_228.4478 Anthoceros agrestis HOM05D008409 ORTHO05D010483 7.6e-11 71.2 118 35.6
Lj3A1050T27 Lonicera japonica HOM05D000197 ORTHO05D000114 1.3e-10 70.5 119 33.6
SMO337G0049 Selaginella moellendorffii HOM05D000322 ORTHO05D000186 1.3e-10 70.5 105 34.3
Mapoly0100s0057 Marchantia polymorpha HOM05D008409 ORTHO05D010483 3.8e-10 68.9 113 33.6
MBI14_g31144_MAGBIO Magnolia biondii HOM05D000322 ORTHO05D000186 4.9e-10 68.6 139 33.8
Nn4g22865 Nelumbo nucifera HOM05D000197 ORTHO05D000114 1.1e-09 67.4 150 30.7
MBI06_g35209_MAGBIO Magnolia biondii HOM05D000322 ORTHO05D000186 1.9e-09 66.6 114 36.0
Manes.05G090000 Manihot esculenta HOM05D000197 ORTHO05D000114 1.9e-09 66.6 149 30.9
Lsat_1_v5_gn_5_100601 Lactuca sativa HOM05D000197 ORTHO05D000114 2.4e-09 66.2 124 31.5
MBI03_g42551_MAGBIO Magnolia biondii HOM05D000322 ORTHO05D000186 2.4e-09 66.2 114 36.0
Lsat_1_v5_gn_5_100541 Lactuca sativa HOM05D000197 ORTHO05D000114 4.2e-09 65.5 122 31.1
MBI15_g00934_MAGBIO Magnolia biondii HOM05D000197 ORTHO05D000114 4.2e-09 65.5 147 29.3
CDE01G0674 Ceratophyllum demersum HOM05D000322 ORTHO05D000186 5.5e-09 65.1 124 32.3
MSTRG.611 Avicennia marina HOM05D000197 ORTHO05D000114 7.1e-09 64.7 119 31.9
Mapoly0063s0018 Marchantia polymorpha HOM05D001593 ORTHO05D002007 7.1e-09 64.7 118 29.7
Eucgr.B02546 Eucalyptus grandis HOM05D000197 ORTHO05D000114 1.2e-08 63.9 108 34.3
Lsat_1_v5_gn_3_48941 Lactuca sativa HOM05D000197 ORTHO05D000114 1.2e-08 63.9 119 30.3
Dinv24891 Davidia involucrata HOM05D000197 ORTHO05D000114 1.6e-08 63.5 119 32.8
Mapoly0131s0015 Marchantia polymorpha HOM05D012277 ORTHO05D000114 1.6e-08 63.5 152 30.3
PSO478G4376 Papaver somniferum HOM05D000197 ORTHO05D000114 1.6e-08 63.5 147 31.3
HanXRQChr17g0563811 Helianthus annuus HOM05D000197 ORTHO05D000114 2.1e-08 63.2 147 28.6
Potri.010G096000 Populus trichocarpa HOM05D000197 ORTHO05D000114 2.1e-08 63.2 108 35.2
Actinidia40313 Actinidia chinensis HOM05D000322 ORTHO05D000186 2.7e-08 62.8 136 30.1
ATR1149G053 Amborella trichopoda HOM05D000197 ORTHO05D000114 2.7e-08 62.8 147 32.0
Mapoly0131s0013 Marchantia polymorpha HOM05D008409 ORTHO05D010483 2.7e-08 62.8 119 31.9
Atru.chr4.2935 Acer truncatum HOM05D000322 ORTHO05D000186 4.6e-08 62.0 148 30.4
MSTRG.3879 Avicennia marina HOM05D000322 ORTHO05D000186 4.6e-08 62.0 86 34.9
CDE12G0035 Ceratophyllum demersum HOM05D000322 ORTHO05D000186 4.6e-08 62.0 124 31.5
MBI14_g31146_MAGBIO Magnolia biondii HOM05D000322 ORTHO05D000186 4.6e-08 62.0 141 31.2
Psat4g125760 Pisum sativum HOM05D000197 ORTHO05D000114 4.6e-08 62.0 148 27.0
Aqoxy5G00806 Aquilegia oxysepala HOM05D000322 ORTHO05D000186 6.0e-08 61.6 105 31.4
PSO017G5859 Papaver somniferum HOM05D000197 ORTHO05D000114 6.0e-08 61.6 147 30.6
Potri.011G127800 Populus trichocarpa HOM05D001593 ORTHO05D010032 6.0e-08 61.6 153 27.5
Sabra10G0068600 Salix brachista HOM05D000197 ORTHO05D000114 6.0e-08 61.6 119 36.1
vmacro16271 Vaccinium macrocarpon HOM05D000197 ORTHO05D000114 6.0e-08 61.6 124 29.8
SEGI_04347 Sequoiadendron giganteum HOM05D000197 ORTHO05D000114 7.9e-08 61.2 145 27.6
unitig_22.g6474 Utricularia gibba HOM05D000197 ORTHO05D000114 7.9e-08 61.2 150 28.7
Actinidia15014 Actinidia chinensis HOM05D000197 ORTHO05D000114 1.0e-07 60.8 120 33.3
MSTRG.10123 Avicennia marina HOM05D000322 ORTHO05D000186 1.0e-07 60.8 131 30.5
AUR62005328 Chenopodium quinoa HOM05D000197 ORTHO05D000114 1.0e-07 60.8 122 31.1
ECA246G2358 Erigeron canadensis HOM05D000197 ORTHO05D000114 1.0e-07 60.8 147 27.9
TAR622G0730 Trochodendron aralioides HOM05D000197 ORTHO05D000114 1.0e-07 60.8 147 29.9
GSVIVG01035062001 Vitis vinifera HOM05D000322 ORTHO05D000186 1.0e-07 60.8 133 30.1
Aqoxy3G00934 Aquilegia oxysepala HOM05D000197 ORTHO05D000114 1.3e-07 60.5 122 34.4
Mapoly0063s0024 Marchantia polymorpha HOM05D008409 ORTHO05D010032 1.3e-07 60.5 131 30.5
Pp3c8_12660 Physcomitrium patens HOM05D008409 ORTHO05D010483 1.3e-07 60.5 130 31.5
TAR622G0624 Trochodendron aralioides HOM05D000197 ORTHO05D000114 1.3e-07 60.5 119 31.1
AUR62013976 Chenopodium quinoa HOM05D000197 ORTHO05D000114 1.8e-07 60.1 122 31.1
Hma1.2p1_0013F.1_g009070 Hydrangea macrophylla HOM05D000322 ORTHO05D000186 1.8e-07 60.1 100 35.0
Lsat_1_v5_gn_5_100681 Lactuca sativa HOM05D000197 ORTHO05D000114 1.8e-07 60.1 147 29.3
SEGI_09675 Sequoiadendron giganteum HOM05D000197 ORTHO05D000114 1.8e-07 60.1 146 30.8
CiPaw.01G144000 Carya illinoinensis HOM05D000322 ORTHO05D000186 2.3e-07 59.7 141 33.3
CiPaw.06G073000 Carya illinoinensis HOM05D000197 ORTHO05D000114 2.3e-07 59.7 112 33.0
CSS0039522 Camellia sinensis var. sinensis HOM05D000197 ORTHO05D000114 3.0e-07 59.3 108 33.3
Migut.L01436 Erythranthe guttata HOM05D000197 ORTHO05D000114 3.0e-07 59.3 151 28.5
HanXRQChr11g0348851 Helianthus annuus HOM05D000322 ORTHO05D000186 3.0e-07 59.3 133 31.6
SEGI_30515 Sequoiadendron giganteum HOM05D000197 ORTHO05D000114 3.0e-07 59.3 146 28.8
Ah.03g132470 Amaranthus hybridus HOM05D000197 ORTHO05D000114 3.9e-07 58.9 119 28.6
ClCG05G025130 Citrullus lanatus HOM05D000197 ORTHO05D000114 3.9e-07 58.9 147 26.5
TWI53G1556 Tripterygium wilfordii HOM05D000322 ORTHO05D000186 3.9e-07 58.9 134 30.6
ECA246G1203 Erigeron canadensis HOM05D000226 ORTHO05D000114 5.1e-07 58.5 108 28.7
Mapoly0063s0019 Marchantia polymorpha HOM05D001593 ORTHO05D010032 5.1e-07 58.5 117 30.8
Mapoly0063s0020 Marchantia polymorpha HOM05D001593 ORTHO05D010032 5.1e-07 58.5 131 29.0
QL06p011134 Quercus lobata HOM05D000322 ORTHO05D000186 5.1e-07 58.5 104 33.7
Ciclev10006674m.g Citrus clementina HOM05D000322 ORTHO05D000186 6.7e-07 58.2 116 33.6
MD13G1161400 Malus domestica HOM05D000322 ORTHO05D000186 6.7e-07 58.2 62 45.2
Manes.15G130100 Manihot esculenta HOM05D000197 ORTHO05D000114 6.7e-07 58.2 149 28.9
Sed0008194 Sechium edule HOM05D001593 ORTHO05D010032 6.7e-07 58.2 155 27.7
COL.COLO4_34686 Corchorus olitorius HOM05D000322 ORTHO05D000186 8.7e-07 57.8 85 40.0
Gohir.D04G143000 Gossypium hirsutum HOM05D008409 ORTHO05D010483 8.7e-07 57.8 104 33.7
Lsat_1_v5_gn_6_114720 Lactuca sativa HOM05D000322 ORTHO05D000186 8.7e-07 57.8 117 31.6
MBI03_g42550_MAGBIO Magnolia biondii HOM05D000322 ORTHO05D000186 8.7e-07 57.8 123 31.7
Manes.03G115300 Manihot esculenta HOM05D001593 ORTHO05D010032 8.7e-07 57.8 149 25.5
Manes.15G007700 Manihot esculenta HOM05D000322 ORTHO05D000186 8.7e-07 57.8 135 31.9
QL06p011115 Quercus lobata HOM05D000322 ORTHO05D000186 8.7e-07 57.8 104 33.7
vmacro16272 Vaccinium macrocarpon HOM05D000197 ORTHO05D000114 8.7e-07 57.8 119 33.6
CsaV3_3G006040 Cucumis sativus L. HOM05D001593 ORTHO05D010032 1.1e-06 57.4 153 28.8
DCAR_023317 Daucus carota HOM05D000322 ORTHO05D000186 1.1e-06 57.4 133 28.6
Glyma.15G146500 Glycine max HOM05D000322 ORTHO05D000186 1.1e-06 57.4 131 28.2
Prupe.4G188300 Prunus persica HOM05D001593 ORTHO05D010032 1.1e-06 57.4 151 27.2
QL06p010956 Quercus lobata HOM05D000322 ORTHO05D000186 1.1e-06 57.4 145 33.1
SalBow2G0185 Salvia bowleyana HOM05D000197 ORTHO05D000114 1.1e-06 57.4 149 24.8
GSVIVG01035055001 Vitis vinifera HOM05D000322 ORTHO05D000186 1.1e-06 57.4 133 29.3
Dinv29700 Davidia involucrata HOM05D000322 ORTHO05D000186 1.5e-06 57.0 114 32.5
Dinv31005 Davidia involucrata HOM05D000197 ORTHO05D000114 1.5e-06 57.0 119 29.4
Dinv31097 Davidia involucrata HOM05D000197 ORTHO05D000114 1.5e-06 57.0 119 29.4
Prupe.1G258100 Prunus persica HOM05D000197 ORTHO05D000114 1.5e-06 57.0 123 32.5
GSVIVG01035060001 Vitis vinifera HOM05D000322 ORTHO05D000186 1.5e-06 57.0 133 30.8
CAN.G407.19 Capsicum annuum HOM05D000322 ORTHO05D000186 1.9e-06 56.6 129 27.1
ClCG10G006650 Citrullus lanatus HOM05D001593 ORTHO05D010032 1.9e-06 56.6 155 27.7
Cc04_g10950 Coffea canephora HOM05D000322 ORTHO05D000186 1.9e-06 56.6 100 33.0
CsaV3_7G004460 Cucumis sativus L. HOM05D008409 ORTHO05D010483 1.9e-06 56.6 118 32.2
HanXRQChr11g0348691 Helianthus annuus HOM05D000322 ORTHO05D000186 1.9e-06 56.6 133 30.8
QL06p010987 Quercus lobata HOM05D000322 ORTHO05D000186 1.9e-06 56.6 131 30.5
GSVIVG01035072001 Vitis vinifera HOM05D000322 ORTHO05D000186 1.9e-06 56.6 153 25.5
Atru.chr6.2992 Acer truncatum HOM05D008409 ORTHO05D010483 2.5e-06 56.2 103 33.0
CiPaw.01G143400 Carya illinoinensis HOM05D000322 ORTHO05D000186 2.5e-06 56.2 130 30.8
CDE01G0729 Ceratophyllum demersum HOM05D000322 ORTHO05D000186 2.5e-06 56.2 143 30.1
ClCG07G002880 Citrullus lanatus HOM05D008409 ORTHO05D010483 2.5e-06 56.2 118 32.2
Gorai.012G128600 Gossypium raimondii HOM05D008409 ORTHO05D010483 2.5e-06 56.2 104 33.7
Psat2g109600 Pisum sativum HOM05D000197 ORTHO05D000114 2.5e-06 56.2 92 32.6
Sabra13G0110600 Salix brachista HOM05D008409 ORTHO05D010483 2.5e-06 56.2 120 30.8
Sabra15G0087800 Salix brachista HOM05D000322 ORTHO05D000186 2.5e-06 56.2 110 32.7
SEGI_36997 Sequoiadendron giganteum HOM05D000322 ORTHO05D000186 2.5e-06 56.2 164 26.8
TAR627G0023 Trochodendron aralioides HOM05D000381 ORTHO05D001117 2.5e-06 56.2 126 27.8
TAR627G0986 Trochodendron aralioides HOM05D000381 ORTHO05D001117 2.5e-06 56.2 126 27.8
vmacro08089 Vaccinium macrocarpon HOM05D000322 ORTHO05D000186 2.5e-06 56.2 113 31.9
GSVIVG01035059001 Vitis vinifera HOM05D000322 ORTHO05D000186 2.5e-06 56.2 133 30.8
GSVIVG01035061001 Vitis vinifera HOM05D000322 ORTHO05D000186 2.5e-06 56.2 133 30.8
Gohir.A10G168100 Gossypium hirsutum HOM05D000322 ORTHO05D000186 3.3e-06 55.8 129 27.9
Nn1g06548 Nelumbo nucifera HOM05D008409 ORTHO05D010483 3.3e-06 55.8 123 30.9
Phvul.009G253000 Phaseolus vulgaris HOM05D000322 ORTHO05D000186 3.3e-06 55.8 131 29.0
Sed0018099 Sechium edule HOM05D008409 ORTHO05D010483 3.3e-06 55.8 118 31.4
SEGI_25322 Sequoiadendron giganteum HOM05D000322 ORTHO05D000114 3.3e-06 55.8 146 28.1
Dinv29699 Davidia involucrata HOM05D000322 ORTHO05D000186 4.3e-06 55.5 159 27.7
Dinv29702 Davidia involucrata HOM05D000322 ORTHO05D000186 4.3e-06 55.5 159 27.7
Eucgr.A00142 Eucalyptus grandis HOM05D000322 ORTHO05D000186 4.3e-06 55.5 153 26.8
HanXRQChr11g0348681 Helianthus annuus HOM05D000322 ORTHO05D000186 4.3e-06 55.5 132 31.1
HanXRQChr11g0348731 Helianthus annuus HOM05D000322 ORTHO05D000186 4.3e-06 55.5 133 29.3
Mapoly0040s0095 Marchantia polymorpha HOM05D012277 ORTHO05D000114 4.3e-06 55.5 146 28.8
Os04g0465600 Oryza sativa ssp. japonica HOM05D000197 ORTHO05D000114 4.3e-06 55.5 155 26.5
unitig_748.g8715 Utricularia gibba HOM05D000322 ORTHO05D000186 4.3e-06 55.5 137 32.8
unitig_748.g8716 Utricularia gibba HOM05D000322 ORTHO05D000186 4.3e-06 55.5 137 32.8
arahy.Tifrunner.gnm1.ann1.9J64GE Arachis hypogaea HOM05D000197 ORTHO05D000114 5.6e-06 55.1 149 26.8
arahy.Tifrunner.gnm1.ann1.LHUD2K Arachis hypogaea HOM05D000197 ORTHO05D000114 5.6e-06 55.1 149 28.2
CAN.G407.20 Capsicum annuum HOM05D000322 ORTHO05D000186 5.6e-06 55.1 129 26.4
Haze_01132 Corylus avellana HOM05D000322 ORTHO05D000186 5.6e-06 55.1 127 26.8
Gohir.A04G103600 Gossypium hirsutum HOM05D008409 ORTHO05D010483 5.6e-06 55.1 105 30.5
Gohir.D10G173850 Gossypium hirsutum HOM05D000322 ORTHO05D000186 5.6e-06 55.1 97 30.9
Gorai.011G194900 Gossypium raimondii HOM05D000322 ORTHO05D000186 5.6e-06 55.1 129 27.1
Lj3g0022181 Lotus japonicus HOM05D001593 ORTHO05D010032 5.6e-06 55.1 153 26.8
Nitab4.5_0004013g0010 Nicotiana tabacum HOM05D000322 ORTHO05D000186 5.6e-06 55.1 129 27.9
PSO675G8696 Papaver somniferum HOM05D008409 ORTHO05D010483 5.6e-06 55.1 114 33.3
Psat4g174160 Pisum sativum HOM05D001593 ORTHO05D010032 5.6e-06 55.1 154 26.0
Potri.013G131000 Populus trichocarpa HOM05D008409 ORTHO05D010483 5.6e-06 55.1 120 30.0
QL06p011120 Quercus lobata HOM05D000322 ORTHO05D000186 5.6e-06 55.1 104 34.6
RcHm_v2.0_Chr4g0423911 Rosa chinensis HOM05D000322 ORTHO05D000186 5.6e-06 55.1 130 30.8
SEGI_28786 Sequoiadendron giganteum HOM05D000322 ORTHO05D000186 5.6e-06 55.1 151 30.5
PGSC0003DMG400014142 Solanum tuberosum HOM05D000322 ORTHO05D000186 5.6e-06 55.1 129 26.4
CiPaw.05G148600 Carya illinoinensis HOM05D000197 ORTHO05D000114 7.4e-06 54.7 145 29.7
Migut.G00115 Erythranthe guttata HOM05D000322 ORTHO05D000186 7.4e-06 54.7 107 33.6
Nn8g41278 Nelumbo nucifera HOM05D000322 ORTHO05D000186 7.4e-06 54.7 109 31.2
Os12g0555200 Oryza sativa ssp. japonica HOM05D021418 ORTHO05D000186 7.4e-06 54.7 122 30.3
PSO541G0816 Papaver somniferum HOM05D008409 ORTHO05D010483 7.4e-06 54.7 123 30.9
QL06p011141 Quercus lobata HOM05D000322 ORTHO05D000186 7.4e-06 54.7 129 31.0
GSVIVG01020183001 Vitis vinifera HOM05D000197 ORTHO05D000114 7.4e-06 54.7 146 28.8
ATR0737G133 Amborella trichopoda HOM05D008409 ORTHO05D010483 9.6e-06 54.3 83 37.3
CAN.G407.18 Capsicum annuum HOM05D000322 ORTHO05D000186 9.6e-06 54.3 129 27.9
Haze_01120 Corylus avellana HOM05D000322 ORTHO05D000186 9.6e-06 54.3 100 30.0
Haze_01122 Corylus avellana HOM05D000322 ORTHO05D000186 9.6e-06 54.3 100 30.0
CsaV3_3G006030 Cucumis sativus L. HOM05D001593 ORTHO05D010032 9.6e-06 54.3 156 23.7
FvH4_4g19020 Fragaria vesca HOM05D000322 ORTHO05D000186 9.6e-06 54.3 130 30.8
HanXRQChr11g0348801 Helianthus annuus HOM05D000322 ORTHO05D000186 9.6e-06 54.3 154 27.9
Lsat_1_v5_gn_5_7021 Lactuca sativa HOM05D001593 ORTHO05D010032 9.6e-06 54.3 151 27.8
Oeu022133.1 Olea europaea HOM05D000381 ORTHO05D001117 9.6e-06 54.3 121 27.3
SEGI_35132 Sequoiadendron giganteum HOM05D000322 ORTHO05D000186 9.6e-06 54.3 155 29.7
TPR.G23028 Trifolium pratense HOM05D001593 ORTHO05D010032 9.6e-06 54.3 145 29.0


User provided reference genes

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