Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_25840 Physcomitrium patens HOM05D000278 ORTHO05D004130 2.9e-42 174.9 93 100.0
Pp3c20_23570 Physcomitrium patens HOM05D000278 ORTHO05D004130 8.9e-23 110.2 118 58.5
SEGI_03361 Sequoiadendron giganteum HOM05D000278 ORTHO05D004130 7.1e-20 100.5 118 53.4
ECA234G0587 Erigeron canadensis HOM05D000278 ORTHO05D004130 2.7e-19 98.6 118 52.5
Migut.E00224 Erythranthe guttata HOM05D000278 ORTHO05D004130 4.6e-19 97.8 118 50.8
CAN.G371.65 Capsicum annuum HOM05D000278 ORTHO05D004130 6.0e-19 97.4 118 51.7
HanXRQChr17g0569181 Helianthus annuus HOM05D000278 ORTHO05D004130 6.0e-19 97.4 118 51.7
Nitab4.5_0000041g0130 Nicotiana tabacum HOM05D000278 ORTHO05D004130 6.0e-19 97.4 118 51.7
Nitab4.5_0012079g0010 Nicotiana tabacum HOM05D000278 ORTHO05D004130 6.0e-19 97.4 118 51.7
Peaxi162Scf00128g00627 Petunia axillaris HOM05D000278 ORTHO05D004130 6.0e-19 97.4 118 51.7
Migut.K00638 Erythranthe guttata HOM05D000278 ORTHO05D004130 7.8e-19 97.1 118 50.8
Aa31LG7G9530 Aethionema arabicum HOM05D000278 ORTHO05D004130 1.3e-18 96.3 118 50.8
AL1G40440 Arabidopsis lyrata HOM05D000278 ORTHO05D004130 1.3e-18 96.3 118 50.8
AT1G24510 Arabidopsis thaliana HOM05D000278 ORTHO05D004130 1.3e-18 96.3 118 50.8
COL.COLO4_23539 Corchorus olitorius HOM05D000278 ORTHO05D004130 1.3e-18 96.3 118 50.8
Duzib248G0682 Durio zibethinus HOM05D000278 ORTHO05D004130 1.3e-18 96.3 118 50.8
Thhalv10007324m.g Eutrema salsugineum HOM05D000278 ORTHO05D004130 1.3e-18 96.3 118 50.8
Gohir.A05G311900 Gossypium hirsutum HOM05D000278 ORTHO05D004130 1.3e-18 96.3 118 51.7
MBI10_g17801_MAGBIO Magnolia biondii HOM05D000278 ORTHO05D004130 1.3e-18 96.3 118 50.0
Rhsim08G0045300 Rhododendron simsii HOM05D000278 ORTHO05D004130 1.3e-18 96.3 118 50.8
Solyc05g013990.3 Solanum lycopersicum HOM05D000278 ORTHO05D004130 1.3e-18 96.3 118 50.8
Sopen05g008940 Solanum pennellii HOM05D000278 ORTHO05D004130 1.3e-18 96.3 118 50.8
MSTRG.13335 Avicennia marina HOM05D000278 ORTHO05D004130 1.7e-18 95.9 118 50.0
CSS0034236 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004130 1.7e-18 95.9 118 50.8
Haze_12299 Corylus avellana HOM05D000278 ORTHO05D004130 1.7e-18 95.9 118 50.0
PSO017G1560 Papaver somniferum HOM05D000278 ORTHO05D004130 1.7e-18 95.9 118 50.8
PSO478G4577 Papaver somniferum HOM05D000278 ORTHO05D004130 1.7e-18 95.9 118 50.8
Prupe.1G240000 Prunus persica HOM05D000278 ORTHO05D004130 1.7e-18 95.9 118 50.8
SalBow8G2690 Salvia bowleyana HOM05D000278 ORTHO05D004130 1.7e-18 95.9 118 50.0
SMO339G0030 Selaginella moellendorffii HOM05D000278 ORTHO05D004130 1.7e-18 95.9 118 50.8
TWI18G0594 Tripterygium wilfordii HOM05D000278 ORTHO05D004130 1.7e-18 95.9 118 50.0
BcaB03g14007 Brassica carinata HOM05D000278 ORTHO05D004130 2.3e-18 95.5 118 50.8
BcaC05g26519 Brassica carinata HOM05D000278 ORTHO05D004130 2.3e-18 95.5 118 50.8
BcaC05g26520 Brassica carinata HOM05D000278 ORTHO05D004130 2.3e-18 95.5 118 50.8
BcaC06g35255 Brassica carinata HOM05D000278 ORTHO05D004130 2.3e-18 95.5 118 50.8
A07p12210 Brassica napus HOM05D000278 ORTHO05D004130 2.3e-18 95.5 118 50.8
A09p38830 Brassica napus HOM05D000278 ORTHO05D004130 2.3e-18 95.5 118 50.8
C05p25680 Brassica napus HOM05D000278 ORTHO05D004130 2.3e-18 95.5 118 50.8
C07p18170 Brassica napus HOM05D000278 ORTHO05D004130 2.3e-18 95.5 118 50.8
BolC5t31296H Brassica oleracea HOM05D000278 ORTHO05D004130 2.3e-18 95.5 118 50.8
BolC7t42328H Brassica oleracea HOM05D000278 ORTHO05D004130 2.3e-18 95.5 118 50.8
BraA07t29005Z Brassica rapa HOM05D000278 ORTHO05D004130 2.3e-18 95.5 118 50.8
BraA09t39390Z Brassica rapa HOM05D000278 ORTHO05D004130 2.3e-18 95.5 118 50.8
FvH4_5g28870 Fragaria vesca HOM05D000278 ORTHO05D004130 2.3e-18 95.5 118 50.8
FAN04G3081 Fragaria x ananassa HOM05D000278 ORTHO05D004130 2.3e-18 95.5 118 50.8
FAN08G2630 Fragaria x ananassa HOM05D000278 ORTHO05D004130 2.3e-18 95.5 118 50.8
FAN13G1794 Fragaria x ananassa HOM05D000278 ORTHO05D004130 2.3e-18 95.5 118 50.8
FAN18G3434 Fragaria x ananassa HOM05D000278 ORTHO05D004130 2.3e-18 95.5 118 50.8
MD16G1106300 Malus domestica HOM05D000278 ORTHO05D004130 2.3e-18 95.5 116 50.9
RcHm_v2.0_Chr4g0432301 Rosa chinensis HOM05D000278 ORTHO05D004130 2.3e-18 95.5 118 50.8
Sp1g23280 Schrenkiella parvula HOM05D000278 ORTHO05D004130 2.3e-18 95.5 118 50.8
Sed0010599 Sechium edule HOM05D000278 ORTHO05D004130 2.3e-18 95.5 118 50.0
BcaC05g26712 Brassica carinata HOM05D000278 ORTHO05D004130 3.0e-18 95.1 119 50.4
CARHR026610 Cardamine hirsuta HOM05D000278 ORTHO05D004130 3.0e-18 95.1 118 50.0
Cfa009265 Carpinus fangiana HOM05D000278 ORTHO05D004130 3.0e-18 95.1 118 50.0
DCAR_007030 Daucus carota HOM05D000278 ORTHO05D004130 3.0e-18 95.1 118 50.8
Gohir.D05G312900 Gossypium hirsutum HOM05D000278 ORTHO05D004130 3.0e-18 95.1 118 50.8
Thecc.02G267800 Theobroma cacao HOM05D000278 ORTHO05D004130 3.0e-18 95.1 118 50.0
TWI75G1086 Tripterygium wilfordii HOM05D000278 ORTHO05D004130 3.0e-18 95.1 118 50.0
ATR0824G281 Amborella trichopoda HOM05D000278 ORTHO05D004130 3.9e-18 94.7 118 50.0
CiPaw.05G176300 Carya illinoinensis HOM05D000278 ORTHO05D004130 3.9e-18 94.7 118 49.2
Gorai.009G334400 Gossypium raimondii HOM05D000278 ORTHO05D004130 3.9e-18 94.7 118 50.8
Hma1.2p1_0079F.1_g041300 Hydrangea macrophylla HOM05D000278 ORTHO05D004130 3.9e-18 94.7 118 50.0
MD13G1106100 Malus domestica HOM05D000278 ORTHO05D004130 3.9e-18 94.7 118 50.0
Manes.13G019600 Manihot esculenta HOM05D000278 ORTHO05D004130 3.9e-18 94.7 118 49.2
Nn3g16164 Nelumbo nucifera HOM05D000278 ORTHO05D004130 3.9e-18 94.7 118 50.0
Nn3g16624 Nelumbo nucifera HOM05D000278 ORTHO05D004130 3.9e-18 94.7 118 50.0
Oeu004469.1 Olea europaea HOM05D000278 ORTHO05D004130 3.9e-18 94.7 118 49.2
Sc04g0009780 Simmondsia chinensis HOM05D000278 ORTHO05D004130 3.9e-18 94.7 118 51.7
vmacro16157 Vaccinium macrocarpon HOM05D000278 ORTHO05D004130 3.9e-18 94.7 118 49.2
Aqoxy3G01361 Aquilegia oxysepala HOM05D000278 ORTHO05D004130 5.1e-18 94.4 118 50.0
BcaB03g12057 Brassica carinata HOM05D000278 ORTHO05D004130 5.1e-18 94.4 118 50.0
A08p26570 Brassica napus HOM05D000278 ORTHO05D004130 5.1e-18 94.4 118 50.0
C03p73450 Brassica napus HOM05D000278 ORTHO05D004130 5.1e-18 94.4 118 50.0
BolC3t19640H Brassica oleracea HOM05D000278 ORTHO05D004130 5.1e-18 94.4 118 50.0
CANSAT01G1557 Cannabis sativa HOM05D000278 ORTHO05D004130 5.1e-18 94.4 118 50.0
Carub.0001s2560 Capsella rubella HOM05D000278 ORTHO05D004130 5.1e-18 94.4 118 50.0
Carub.0002s1419 Capsella rubella HOM05D000278 ORTHO05D004130 5.1e-18 94.4 118 50.0
ClCG08G017540 Citrullus lanatus HOM05D000278 ORTHO05D004130 5.1e-18 94.4 118 50.0
Cc11_g16190 Coffea canephora HOM05D000278 ORTHO05D004130 5.1e-18 94.4 118 49.2
MELO3C010705.2 Cucumis melo HOM05D000278 ORTHO05D004130 5.1e-18 94.4 118 50.0
CsaV3_2G025080 Cucumis sativus L. HOM05D000278 ORTHO05D004130 5.1e-18 94.4 118 50.0
Gohir.D01G153200 Gossypium hirsutum HOM05D000278 ORTHO05D004130 5.1e-18 94.4 118 50.0
Gorai.002G189700 Gossypium raimondii HOM05D000278 ORTHO05D004130 5.1e-18 94.4 118 50.0
Lsat_1_v5_gn_8_155141 Lactuca sativa HOM05D000278 ORTHO05D004130 5.1e-18 94.4 118 49.2
Lj6g0014415 Lotus japonicus HOM05D000278 ORTHO05D004130 5.1e-18 94.4 118 50.0
Sabra10G0018400 Salix brachista HOM05D000278 ORTHO05D004130 5.1e-18 94.4 118 49.2
SalBow2G1192 Salvia bowleyana HOM05D000278 ORTHO05D004130 5.1e-18 94.4 118 50.0
GSVIVG01020856001 Vitis vinifera HOM05D000278 ORTHO05D004130 5.1e-18 94.4 118 49.2
Aa31LG4G12290 Aethionema arabicum HOM05D000278 ORTHO05D004130 6.6e-18 94.0 118 49.2
BcaC01g01645 Brassica carinata HOM05D000278 ORTHO05D004130 6.6e-18 94.0 118 50.0
Dinv14759 Davidia involucrata HOM05D000278 ORTHO05D004130 6.6e-18 94.0 118 49.2
Duzib268G0205 Durio zibethinus HOM05D000278 ORTHO05D004130 6.6e-18 94.0 118 49.2
Gohir.A01G157200 Gossypium hirsutum HOM05D000278 ORTHO05D004130 6.6e-18 94.0 118 49.2
SGA_v2.0_scaffold87G27108 Striga asiatica HOM05D000278 ORTHO05D004130 6.6e-18 94.0 118 48.3
QL03p056030 Quercus lobata HOM05D000278 ORTHO05D004130 8.6e-18 93.6 118 49.2
Hund06050 Selenicereus undatus HOM05D000278 ORTHO05D004130 8.6e-18 93.6 118 50.0
unitig_22.g5528 Utricularia gibba HOM05D000278 ORTHO05D004130 8.6e-18 93.6 118 49.2
Actinidia15123 Actinidia chinensis HOM05D000278 ORTHO05D004130 1.1e-17 93.2 118 50.8
Hma1.2p1_0815F.1_g222810 Hydrangea macrophylla HOM05D000278 ORTHO05D004130 1.1e-17 93.2 118 49.2
Lj6A817T55 Lonicera japonica HOM05D000278 ORTHO05D004130 1.1e-17 93.2 118 49.2
Potri.008G182300 Populus trichocarpa HOM05D000278 ORTHO05D004130 1.1e-17 93.2 118 49.2
Potri.010G051700 Populus trichocarpa HOM05D000278 ORTHO05D004130 1.1e-17 93.2 118 48.3
Sabra08G0138800 Salix brachista HOM05D000278 ORTHO05D004130 1.1e-17 93.2 118 50.0
TAR622G1111 Trochodendron aralioides HOM05D000278 ORTHO05D004130 1.1e-17 93.2 118 47.5
arahy.Tifrunner.gnm1.ann1.K5BW40 Arachis hypogaea HOM05D000278 ORTHO05D004130 1.5e-17 92.8 118 48.3
arahy.Tifrunner.gnm1.ann1.W00XVX Arachis hypogaea HOM05D000278 ORTHO05D004130 1.5e-17 92.8 118 48.3
Ca_25126_v3 Cicer arietinum L. HOM05D000278 ORTHO05D004130 1.5e-17 92.8 118 48.3
Mapoly0051s0088 Marchantia polymorpha HOM05D000278 ORTHO05D004130 1.5e-17 92.8 118 51.7
Oeu049171.1 Olea europaea HOM05D000278 ORTHO05D004130 1.5e-17 92.8 118 48.3
Psat5g092720 Pisum sativum HOM05D000278 ORTHO05D004130 1.5e-17 92.8 118 48.3
TPR.G20618 Trifolium pratense HOM05D000278 ORTHO05D004130 1.5e-17 92.8 118 48.3
TAR374G0849 Trochodendron aralioides HOM05D000278 ORTHO05D004130 1.5e-17 92.8 118 47.5
unitig_8.g3931 Utricularia gibba HOM05D000278 ORTHO05D004130 1.5e-17 92.8 118 48.3
Zm00001eb118030 Zea mays HOM05D000278 ORTHO05D004130 1.5e-17 92.8 118 49.2
Zm00001eb298950 Zea mays HOM05D000278 ORTHO05D004130 1.5e-17 92.8 118 49.2
Manes.12G019200 Manihot esculenta HOM05D000278 ORTHO05D004130 1.9e-17 92.4 118 48.3
Nn4g22514 Nelumbo nucifera HOM05D000278 ORTHO05D004130 1.9e-17 92.4 118 48.3
Os06g0562600 Oryza sativa ssp. japonica HOM05D000278 ORTHO05D004130 1.9e-17 92.4 118 48.3
THA.LOC104825542 Tarenaya hassleriana HOM05D000278 ORTHO05D004130 1.9e-17 92.4 118 49.2
Ah.03g133570 Amaranthus hybridus HOM05D000278 ORTHO05D004130 2.5e-17 92.0 118 50.0
MSTRG.7958 Avicennia marina HOM05D000278 ORTHO05D004130 2.5e-17 92.0 118 48.3
CDE02G0970 Ceratophyllum demersum HOM05D000278 ORTHO05D004130 2.5e-17 92.0 118 47.5
Glyma.11G244700 Glycine max HOM05D000278 ORTHO05D004130 2.5e-17 92.0 118 47.5
Glyma.18G012400 Glycine max HOM05D000278 ORTHO05D004130 2.5e-17 92.0 118 47.5
THA.LOC104807780 Tarenaya hassleriana HOM05D000278 ORTHO05D004130 2.5e-17 92.0 118 49.2
VMungo1383G1502 Vigna mungo HOM05D000278 ORTHO05D004130 2.5e-17 92.0 118 47.5
Gohir.D12G150900 Gossypium hirsutum HOM05D000278 ORTHO05D004130 3.3e-17 91.7 118 49.2
Gorai.008G162400 Gossypium raimondii HOM05D000278 ORTHO05D004130 3.3e-17 91.7 118 49.2
Lsat_1_v5_gn_4_2661 Lactuca sativa HOM05D000278 ORTHO05D004130 3.3e-17 91.7 118 50.0
Lalb_Chr19g0127401 Lupinus albus HOM05D000278 ORTHO05D004130 3.3e-17 91.7 118 46.6
Phvul.001G256700 Phaseolus vulgaris HOM05D000278 ORTHO05D004130 3.3e-17 91.7 118 47.5
Actinidia37459 Actinidia chinensis HOM05D000278 ORTHO05D004130 4.3e-17 91.3 118 49.2
Ciclev10031191m.g Citrus clementina HOM05D000278 ORTHO05D004130 4.3e-17 91.3 118 47.5
Eucgr.B03239 Eucalyptus grandis HOM05D000278 ORTHO05D004130 4.3e-17 91.3 118 47.5
GSVIVG01000590001 Vitis vinifera HOM05D000278 ORTHO05D004130 4.3e-17 91.3 118 47.5
Ah.02g130390 Amaranthus hybridus HOM05D000278 ORTHO05D004130 7.3e-17 90.5 118 49.2
Lalb_Chr01g0021371 Lupinus albus HOM05D000278 ORTHO05D004130 7.3e-17 90.5 118 47.5
Lalb_Chr03g0039791 Lupinus albus HOM05D000278 ORTHO05D004130 7.3e-17 90.5 118 48.3
Hund25414 Selenicereus undatus HOM05D000278 ORTHO05D004130 7.3e-17 90.5 118 47.5
HPP92_001208 Vanilla planifolia HOM05D000278 ORTHO05D004130 7.3e-17 90.5 118 46.6
Medtr3g086330 Medicago truncatula HOM05D000278 ORTHO05D004130 1.6e-16 89.4 118 46.6
Cpa.g.sc33.88 Carica papaya HOM05D000278 ORTHO05D004130 2.1e-16 89.0 118 45.8
EL10As2g23192 Beta vulgaris HOM05D000278 ORTHO05D004130 3.6e-16 88.2 118 47.5
PGR102G1580 Punica granatum HOM05D000278 ORTHO05D004130 6.2e-16 87.4 118 45.8
AUR62005529 Chenopodium quinoa HOM05D000278 ORTHO05D004130 8.1e-16 87.0 118 46.6
AUR62024208 Chenopodium quinoa HOM05D000278 ORTHO05D004130 8.1e-16 87.0 118 46.6
Dinv11027 Davidia involucrata HOM05D000278 ORTHO05D004130 8.1e-16 87.0 118 46.6
TAR629G3233 Trochodendron aralioides HOM05D000278 ORTHO05D004130 1.1e-15 86.7 116 45.7
Oeu009693.1 Olea europaea HOM05D000278 ORTHO05D004130 3.1e-15 85.1 118 45.8
PRCOL_00003659 Prasinoderma coloniale HOM05D000278 ORTHO05D004130 4.0e-15 84.7 118 45.8
CBR_g40771 Chara braunii HOM05D000278 ORTHO05D004130 5.2e-15 84.3 118 44.1
Cre03.g156750 Chlamydomonas reinhardtii HOM05D000278 ORTHO05D004130 1.3e-13 79.7 118 42.4
MCO07G493 Micromonas commoda HOM05D000278 ORTHO05D004130 6.4e-13 77.4 115 43.5
Haze_26958 Corylus avellana HOM05D000278 ORTHO05D004130 3.2e-12 75.1 115 44.3
Solyc04g045410.3 Solanum lycopersicum HOM05D000278 ORTHO05D004130 3.2e-12 75.1 119 41.2
HanXRQChr05g0128801 Helianthus annuus HOM05D000278 ORTHO05D004130 4.2e-12 74.7 76 57.9
Thhalv10019724m.g Eutrema salsugineum HOM05D000278 ORTHO05D004130 5.4e-12 74.3 107 44.9
Psat0s1548g0040 Pisum sativum HOM05D000278 ORTHO05D015036 1.2e-11 73.2 70 54.3
Psat0s3108g0080 Pisum sativum HOM05D000278 ORTHO05D015036 1.6e-11 72.8 70 54.3
Aqoxy7G01857 Aquilegia oxysepala HOM05D000278 ORTHO05D004130 2.7e-11 72.0 69 56.5
Cfa001637 Carpinus fangiana HOM05D000278 ORTHO05D004130 3.5e-11 71.6 112 42.0
Lj3C1063G7 Lonicera japonica HOM05D000278 ORTHO05D004130 5.1e-10 67.8 65 56.9
Actinidia08112 Actinidia chinensis HOM05D000278 ORTHO05D004130 1.6e-08 62.8 60 58.3
Sp5g22770 Schrenkiella parvula HOM05D000278 ORTHO05D004130 1.1e-07 60.1 112 37.5
Atru.chr11.2193 Acer truncatum HOM05D000278 ORTHO05D004130 6.9e-07 57.4 73 49.3


User provided reference genes

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