Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_25720 Physcomitrium patens HOM05D004805 ORTHO05D005756 0.0e+00 1172.9 607 100.0
Pp3c20_23380 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.1e-265 919.8 610 79.2
Pp3c3_17230 Physcomitrium patens HOM05D004805 ORTHO05D005756 7.8e-184 647.9 448 74.1
Pp3c13_13680 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.1e-172 610.9 445 71.0
Mapoly0011s0011 Marchantia polymorpha HOM05D004805 ORTHO05D005756 2.7e-144 516.5 434 61.3
AagrBONN_evm.TU.Sc2ySwM_362.484 Anthoceros agrestis HOM05D004805 ORTHO05D005756 2.9e-138 496.5 408 60.5
AagrBONN_evm.TU.Sc2ySwM_228.3487 Anthoceros agrestis HOM05D004805 ORTHO05D005756 4.2e-129 466.1 410 57.3
Aqoxy4G03118 Aquilegia oxysepala HOM05D004805 ORTHO05D005756 1.0e-74 285.4 245 57.1
Nn1g07520 Nelumbo nucifera HOM05D004805 ORTHO05D005756 4.2e-73 280.0 245 55.1
CARHR269130 Cardamine hirsuta HOM05D004805 ORTHO05D005756 7.2e-73 279.3 239 55.2
THA.LOC104811668 Tarenaya hassleriana HOM05D004805 ORTHO05D005756 9.5e-73 278.9 240 55.0
ClCG10G004450 Citrullus lanatus HOM05D004805 ORTHO05D005756 1.6e-72 278.1 245 53.5
Atru.chr13.2016 Acer truncatum HOM05D004805 ORTHO05D005756 6.1e-72 276.2 255 52.5
RcHm_v2.0_Chr7g0241681 Rosa chinensis HOM05D004805 ORTHO05D005756 6.1e-72 276.2 241 53.1
BcaC04g20199 Brassica carinata HOM05D004805 ORTHO05D005756 8.0e-72 275.8 239 54.8
BcaB01g04372 Brassica carinata HOM05D004805 ORTHO05D005756 1.4e-71 275.0 239 54.8
Carub.0008s1616 Capsella rubella HOM05D004805 ORTHO05D005756 1.8e-71 274.6 239 54.8
PSO832G0973 Papaver somniferum HOM05D004805 ORTHO05D005756 1.8e-71 274.6 247 53.4
LjContig00081g0004731 Lotus japonicus HOM05D004805 ORTHO05D005756 2.3e-71 274.2 243 54.3
BcaC01g06393 Brassica carinata HOM05D004805 ORTHO05D005756 3.0e-71 273.9 242 54.1
Glyma.14G013400 Glycine max HOM05D004805 ORTHO05D005756 3.0e-71 273.9 246 53.7
TAR626G0989 Trochodendron aralioides HOM05D004805 ORTHO05D005756 3.0e-71 273.9 246 53.7
Glyma.17G150300 Glycine max HOM05D004805 ORTHO05D005756 4.0e-71 273.5 247 53.4
AT5G55810 Arabidopsis thaliana HOM05D004805 ORTHO05D005756 6.8e-71 272.7 239 53.6
FvH4_3g11630 Fragaria vesca HOM05D004805 ORTHO05D005756 6.8e-71 272.7 241 51.9
CANSAT11G2385 Cannabis sativa HOM05D004805 ORTHO05D005756 1.2e-70 271.9 241 53.1
Lalb_Chr09g0322761 Lupinus albus HOM05D004805 ORTHO05D005756 1.2e-70 271.9 244 53.7
Cfa020188 Carpinus fangiana HOM05D004805 ORTHO05D005756 1.5e-70 271.6 247 53.4
Prupe.3G149500 Prunus persica HOM05D004805 ORTHO05D005756 1.5e-70 271.6 241 53.1
CAN.G623.13 Capsicum annuum HOM05D004805 ORTHO05D005756 2.0e-70 271.2 246 52.4
GSVIVG01014691001 Vitis vinifera HOM05D004805 ORTHO05D005756 2.6e-70 270.8 245 53.5
Atru.chr9.1539 Acer truncatum HOM05D004805 ORTHO05D005756 3.4e-70 270.4 241 53.5
Aa31LG3G11710 Aethionema arabicum HOM05D004805 ORTHO05D005756 3.4e-70 270.4 239 52.7
CsaV3_3G004240 Cucumis sativus L. HOM05D004805 ORTHO05D005756 3.4e-70 270.4 245 52.7
Duzib268G0855 Durio zibethinus HOM05D004805 ORTHO05D005756 4.4e-70 270.0 241 53.1
FAN16G0962 Fragaria x ananassa HOM05D004805 ORTHO05D005756 4.4e-70 270.0 241 51.9
FAN25G0449 Fragaria x ananassa HOM05D004805 ORTHO05D005756 4.4e-70 270.0 241 51.9
PGR142G3095 Punica granatum HOM05D004805 ORTHO05D005756 4.4e-70 270.0 240 52.5
Sp6g17690 Schrenkiella parvula HOM05D004805 ORTHO05D005756 4.4e-70 270.0 239 53.1
TPR.G8592 Trifolium pratense HOM05D004805 ORTHO05D005756 4.4e-70 270.0 244 52.9
Rhsim06G0229900 Rhododendron simsii HOM05D004805 ORTHO05D005756 5.7e-70 269.6 299 46.8
Psat2g007280 Pisum sativum HOM05D004805 ORTHO05D005756 7.5e-70 269.2 245 51.8
Ca_06397_v3 Cicer arietinum L. HOM05D004805 ORTHO05D005756 9.8e-70 268.9 245 54.3
DCAR_013232 Daucus carota HOM05D004805 ORTHO05D005756 9.8e-70 268.9 241 54.4
RcHm_v2.0_Chr5g0018651 Rosa chinensis HOM05D004805 ORTHO05D005756 1.3e-69 268.5 241 51.9
Phvul.008G279200 Phaseolus vulgaris HOM05D004805 ORTHO05D005756 1.7e-69 268.1 250 51.6
Lj1g0004670 Lotus japonicus HOM05D004805 ORTHO05D005756 2.2e-69 267.7 245 51.8
Sed0016007 Sechium edule HOM05D004805 ORTHO05D005756 2.2e-69 267.7 245 51.8
Sopen07g033800 Solanum pennellii HOM05D004805 ORTHO05D005756 2.2e-69 267.7 242 53.3
Haze_09828 Corylus avellana HOM05D004805 ORTHO05D005756 3.7e-69 266.9 245 53.1
AL8G31370 Arabidopsis lyrata HOM05D004805 ORTHO05D005756 6.3e-69 266.2 239 53.6
Lsat_1_v5_gn_9_89740 Lactuca sativa HOM05D004805 ORTHO05D005756 6.3e-69 266.2 245 53.1
PSO063G7513 Papaver somniferum HOM05D004805 ORTHO05D005756 1.1e-68 265.4 241 53.9
CiPaw.12G138400 Carya illinoinensis HOM05D004805 ORTHO05D005756 1.8e-68 264.6 244 52.0
HanXRQChr03g0074031 Helianthus annuus HOM05D004805 ORTHO05D005756 1.8e-68 264.6 227 55.5
Dinv10336 Davidia involucrata HOM05D004805 ORTHO05D005756 2.4e-68 264.2 264 51.1
Solyc07g065590.4 Solanum lycopersicum HOM05D004805 ORTHO05D005756 3.2e-68 263.8 243 52.7
PGSC0003DMG400022170 Solanum tuberosum HOM05D004805 ORTHO05D005756 5.4e-68 263.1 217 56.7
Carub.0005s0937 Capsella rubella HOM05D004805 ORTHO05D005756 7.0e-68 262.7 238 53.4
Cc00_g18290 Coffea canephora HOM05D004805 ORTHO05D005756 9.2e-68 262.3 243 52.7
Medtr5g095960 Medicago truncatula HOM05D004805 ORTHO05D005756 9.2e-68 262.3 244 51.2
Carub.0005s0950 Capsella rubella HOM05D004805 ORTHO05D005756 1.2e-67 261.9 238 52.9
ATR0090G032 Amborella trichopoda HOM05D004805 ORTHO05D005756 1.6e-67 261.5 219 57.1
BcaB08g35939 Brassica carinata HOM05D004805 ORTHO05D005756 2.0e-67 261.2 239 52.7
MD05G1261800 Malus domestica HOM05D004805 ORTHO05D005756 2.0e-67 261.2 243 50.6
CSS0002120 Camellia sinensis var. sinensis HOM05D004805 ORTHO05D005756 2.7e-67 260.8 247 51.0
Zm00001eb191530 Zea mays HOM05D004805 ORTHO05D005756 2.7e-67 260.8 239 54.4
Ciclev10009329m.g Citrus clementina HOM05D004805 ORTHO05D005756 3.5e-67 260.4 241 51.0
Peaxi162Scf00139g01316 Petunia axillaris HOM05D004805 ORTHO05D005756 3.5e-67 260.4 242 52.5
Manes.03G141600 Manihot esculenta HOM05D004805 ORTHO05D005756 1.0e-66 258.8 241 51.5
arahy.Tifrunner.gnm1.ann1.1A96RS Arachis hypogaea HOM05D004805 ORTHO05D005756 1.3e-66 258.5 243 50.2
arahy.Tifrunner.gnm1.ann1.KL44N8 Arachis hypogaea HOM05D004805 ORTHO05D005756 1.3e-66 258.5 245 49.8
Gorai.004G033700 Gossypium raimondii HOM05D004805 ORTHO05D005756 1.3e-66 258.5 240 51.2
ECA234G3028 Erigeron canadensis HOM05D004805 ORTHO05D005756 2.3e-66 257.7 246 52.0
Eucgr.F03688 Eucalyptus grandis HOM05D004805 ORTHO05D005756 5.0e-66 256.5 240 51.7
Potri.005G032300 Populus trichocarpa HOM05D004805 ORTHO05D005756 5.0e-66 256.5 241 49.4
MSTRG.27026 Avicennia marina HOM05D004805 ORTHO05D005756 1.5e-65 255.0 251 51.0
AagrBONN_evm.TU.Sc2ySwM_344.1047 Anthoceros agrestis HOM05D004805 ORTHO05D005756 2.5e-65 254.2 219 55.3
Actinidia05003 Actinidia chinensis HOM05D004805 ORTHO05D005756 4.3e-65 253.4 247 49.4
Actinidia30402 Actinidia chinensis HOM05D004805 ORTHO05D005756 9.5e-65 252.3 247 49.8
SGA_v2.0_scaffold44G16806 Striga asiatica HOM05D001081 ORTHO05D003320 1.2e-64 251.9 239 50.6
EL10Ac1g00341 Beta vulgaris HOM05D004805 ORTHO05D005756 1.6e-64 251.5 246 51.2
Lj1C890G11 Lonicera japonica HOM05D004805 ORTHO05D005756 2.1e-64 251.1 243 51.9
MELO3C014119.2 Cucumis melo HOM05D004805 ORTHO05D005756 2.8e-64 250.8 282 45.7
HPP92_025829 Vanilla planifolia HOM05D004805 ORTHO05D005756 6.2e-64 249.6 244 48.8
Potri.013G021900 Populus trichocarpa HOM05D004805 ORTHO05D005756 2.3e-63 247.7 237 48.9
Sabra05G0034900 Salix brachista HOM05D004805 ORTHO05D005756 6.8e-63 246.1 242 47.5
A03p13810 Brassica napus HOM05D004805 ORTHO05D005756 3.4e-62 243.8 212 54.7
CBR_g34363 Chara braunii HOM05D000019 ORTHO05D000002 9.8e-62 242.3 300 45.0
C03p16250 Brassica napus HOM05D004805 ORTHO05D005756 1.7e-61 241.5 212 54.2
SalBow4G0417 Salvia bowleyana HOM05D004805 ORTHO05D005756 4.9e-61 240.0 267 45.3
Duzib213G0036 Durio zibethinus HOM05D004805 ORTHO05D005756 8.3e-61 239.2 241 49.4
C09p46750 Brassica napus HOM05D004805 ORTHO05D005756 1.1e-60 238.8 213 54.0
BolC9t57526H Brassica oleracea HOM05D004805 ORTHO05D005756 1.1e-60 238.8 213 54.0
A10p13030 Brassica napus HOM05D004805 ORTHO05D005756 1.4e-60 238.4 213 54.0
BraA10t43397Z Brassica rapa HOM05D004805 ORTHO05D005756 7.0e-60 236.1 213 53.1
Gohir.A08G025200 Gossypium hirsutum HOM05D004805 ORTHO05D005756 4.6e-59 233.4 243 47.7
AUR62022629 Chenopodium quinoa HOM05D004805 ORTHO05D005756 1.7e-58 231.5 239 48.5
Gohir.D08G035700 Gossypium hirsutum HOM05D004805 ORTHO05D005756 3.0e-58 230.7 240 47.9
MD10G1240100 Malus domestica HOM05D004805 ORTHO05D005756 3.0e-58 230.7 203 51.2
Nitab4.5_0002736g0040 Nicotiana tabacum HOM05D004805 ORTHO05D005756 1.2e-56 225.3 192 54.2
Hma1.2p1_1402F.1_g281100 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 3.6e-56 223.8 216 49.5
QL08p004083 Quercus lobata HOM05D004805 ORTHO05D005756 3.6e-56 223.8 230 49.1
SMO364G0361 Selaginella moellendorffii HOM05D004805 ORTHO05D005756 3.1e-55 220.7 215 51.2
VMungo0647G2576 Vigna mungo HOM05D004805 ORTHO05D005756 3.1e-55 220.7 197 51.8
TWI38G2348 Tripterygium wilfordii HOM05D004805 ORTHO05D005756 4.0e-55 220.3 201 50.7
Sc16g0008090 Simmondsia chinensis HOM05D004805 ORTHO05D005756 1.5e-54 218.4 245 45.7
Nitab4.5_0007415g0050 Nicotiana tabacum HOM05D004805 ORTHO05D005756 9.8e-54 215.7 193 52.8
Medtr3g007850 Medicago truncatula HOM05D004805 ORTHO05D005756 1.7e-53 214.9 196 51.5
Hund27237 Selenicereus undatus HOM05D004805 ORTHO05D005756 4.9e-53 213.4 275 40.7
Lsat_1_v5_gn_4_137701 Lactuca sativa HOM05D004805 ORTHO05D005756 1.9e-52 211.5 188 52.1
AagrBONN_evm.TU.Sc2ySwM_344.1044 Anthoceros agrestis HOM05D004805 ORTHO05D005756 3.2e-52 210.7 179 62.6
AagrBONN_evm.TU.Sc2ySwM_344.1045 Anthoceros agrestis HOM05D004805 ORTHO05D005756 9.2e-52 209.1 196 53.1
CAN.G849.12 Capsicum annuum HOM05D004805 ORTHO05D005756 2.7e-51 207.6 193 51.8
vmacro11591 Vaccinium macrocarpon HOM05D004805 ORTHO05D005756 7.8e-51 206.1 259 43.2
Thecc.07G013300 Theobroma cacao HOM05D004805 ORTHO05D005756 5.1e-50 203.4 178 51.1
AUR62004423 Chenopodium quinoa HOM05D004805 ORTHO05D005756 6.2e-48 196.4 166 56.0
FAN21G3052 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.8e-47 194.9 192 50.0
SGA_v2.0_scaffold192G40544 Striga asiatica HOM05D001081 ORTHO05D003320 5.2e-47 193.4 230 43.5
Prupe.4G103800 Prunus persica HOM05D004805 ORTHO05D005756 6.8e-47 193.0 241 41.1
CARHR269180 Cardamine hirsuta HOM05D004805 ORTHO05D005756 8.9e-47 192.6 164 54.3
SEGI_06932 Sequoiadendron giganteum HOM05D004805 ORTHO05D018109 2.9e-45 187.6 174 52.9
Ah.05g180060 Amaranthus hybridus HOM05D004805 ORTHO05D005756 2.1e-43 181.4 191 50.8
PRCOL_00003123 Prasinoderma coloniale HOM05D004805 ORTHO05D005756 1.7e-42 178.3 220 43.2
Migut.F01027 Erythranthe guttata HOM05D004805 ORTHO05D005756 3.0e-42 177.6 239 41.8
TAR624G1110 Trochodendron aralioides HOM05D004805 ORTHO05D005756 2.5e-41 174.5 197 45.7
Os02g0814900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 4.7e-40 170.2 218 45.0
BraA03t10684Z Brassica rapa HOM05D004805 ORTHO05D005756 6.2e-40 169.9 228 43.4
Glyma.19G097900 Glycine max HOM05D004805 ORTHO05D005756 3.4e-38 164.1 144 52.1
Lj3g0007860 Lotus japonicus HOM05D004805 ORTHO05D005756 2.9e-37 161.0 243 40.3
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 3.5e-35 154.1 172 45.3
Hma1.2p1_1516F.1_g288260 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 1.0e-34 152.5 210 38.1
COL.COLO4_09836 Corchorus olitorius HOM05D004805 ORTHO05D005756 1.3e-34 152.1 129 57.4
BolC3t14047H Brassica oleracea HOM05D004805 ORTHO05D005756 3.9e-34 150.6 238 39.1
Rhsim04G0012600 Rhododendron simsii HOM05D004805 ORTHO05D005756 6.2e-32 143.3 166 42.8
Thhalv10015421m.g Eutrema salsugineum HOM05D004805 ORTHO05D005756 1.1e-31 142.5 192 39.6
Cpa.g.sc26.30 Carica papaya HOM05D004805 ORTHO05D005756 1.1e-25 122.5 106 49.1
Os09g0347900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 2.5e-25 121.3 106 50.9
ECA240G4670 Erigeron canadensis HOM05D004805 ORTHO05D005756 2.4e-23 114.8 105 50.5
PSO170G0902 Papaver somniferum HOM05D004805 ORTHO05D005756 2.0e-22 111.7 104 51.9
SEGI_22417 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 2.0e-22 111.7 87 56.3
unitig_0.g252 Utricularia gibba HOM05D004805 ORTHO05D005756 2.6e-22 111.3 105 45.7
Glyma.02G300600 Glycine max HOM05D004805 ORTHO05D005756 2.2e-21 108.2 107 47.7
Cfa025186 Carpinus fangiana HOM05D004805 ORTHO05D005756 3.5e-19 100.9 161 39.8
Cre14.g626950 Chlamydomonas reinhardtii HOM05D004805 ORTHO05D005756 8.1e-16 89.7 378 23.5
CBR_g34381 Chara braunii HOM05D000019 ORTHO05D000048 2.4e-15 88.2 81 46.9
SEGI_01519 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 2.4e-15 88.2 72 58.3
QL08p004070 Quercus lobata HOM05D000031 ORTHO05D005756 5.8e-14 83.6 215 30.2
Hma1.2p1_0226F.1_g095340 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 2.2e-13 81.6 158 31.6
SEGI_37983 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 5.1e-10 70.5 82 45.1
FAN24G2452 Fragaria x ananassa HOM05D004805 ORTHO05D005756 6.3e-08 63.5 55 49.1
Oeu037059.1 Olea europaea HOM05D004805 ORTHO05D005756 1.1e-07 62.8 63 49.2
AagrBONN_evm.TU.Sc2ySwM_362.820 Anthoceros agrestis HOM05D002537 ORTHO05D004294 1.4e-07 62.4 125 28.0
PSO170G5679 Papaver somniferum HOM05D006943 ORTHO05D008565 3.1e-07 61.2 104 34.6
PSO063G4511 Papaver somniferum HOM05D006943 ORTHO05D008565 4.1e-07 60.8 104 34.6
CBR_g38396 Chara braunii HOM05D002537 ORTHO05D002751 5.3e-07 60.5 135 28.1
vmacro03493 Vaccinium macrocarpon HOM05D003725 ORTHO05D004294 1.2e-06 59.3 121 29.8
AagrBONN_evm.TU.Sc2ySwM_117.2665 Anthoceros agrestis HOM05D003725 ORTHO05D004294 1.5e-06 58.9 153 28.8
CBR_g21304 Chara braunii HOM05D005350 ORTHO05D003171 2.0e-06 58.5 129 29.5
SMO141G0264 Selaginella moellendorffii HOM05D010558 ORTHO05D018109 2.6e-06 58.2 198 24.7
CBR_g41720 Chara braunii HOM05D000601 ORTHO05D000407 3.4e-06 57.8 141 26.2
ECA234G1395 Erigeron canadensis HOM05D004805 ORTHO05D005756 1.0e-05 56.2 66 42.4


User provided reference genes

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