Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_24110 Physcomitrium patens HOM05D005159 ORTHO05D006237 8.5e-94 347.1 183 100.0
CAN.G497.25 Capsicum annuum HOM05D005159 ORTHO05D006237 9.0e-35 151.0 138 57.2
Solyc02g089600.3 Solanum lycopersicum HOM05D005159 ORTHO05D006237 9.0e-35 151.0 138 57.2
PGSC0003DMG400010100 Solanum tuberosum HOM05D005159 ORTHO05D006237 3.4e-34 149.1 138 56.5
Peaxi162Scf00479g00439 Petunia axillaris HOM05D005159 ORTHO05D006237 4.5e-34 148.7 138 56.5
Ca_13657_v3 Cicer arietinum L. HOM05D005159 ORTHO05D006237 1.3e-33 147.1 139 58.3
Sed0002827 Sechium edule HOM05D005159 ORTHO05D006237 1.7e-33 146.7 158 52.5
Sopen03g009860 Solanum pennellii HOM05D005159 ORTHO05D006237 1.7e-33 146.7 138 55.8
PGSC0003DMG400018775 Solanum tuberosum HOM05D005159 ORTHO05D006237 1.7e-33 146.7 138 55.8
Sc10g0001500 Simmondsia chinensis HOM05D005159 ORTHO05D006237 2.2e-33 146.4 138 56.5
Peaxi162Scf01056g00019 Petunia axillaris HOM05D005159 ORTHO05D006237 6.4e-33 144.8 138 55.8
Solyc03g046350.3 Solanum lycopersicum HOM05D005159 ORTHO05D006237 6.4e-33 144.8 138 55.1
Nitab4.5_0001982g0030 Nicotiana tabacum HOM05D005159 ORTHO05D006237 8.4e-33 144.4 138 54.3
Nitab4.5_0006224g0050 Nicotiana tabacum HOM05D005159 ORTHO05D006237 2.4e-32 142.9 138 54.3
Psat6g166480 Pisum sativum HOM05D005159 ORTHO05D006237 2.4e-32 142.9 137 58.4
MD09G1079700 Malus domestica HOM05D005159 ORTHO05D006237 3.2e-32 142.5 138 56.5
GSVIVG01036491001 Vitis vinifera HOM05D005159 ORTHO05D006237 3.2e-32 142.5 138 55.8
TWI32G0838 Tripterygium wilfordii HOM05D005159 ORTHO05D006237 4.2e-32 142.1 137 57.7
Migut.K00872 Erythranthe guttata HOM05D005159 ORTHO05D006237 5.4e-32 141.7 138 56.5
ClCG11G001130 Citrullus lanatus HOM05D005159 ORTHO05D006237 9.3e-32 141.0 151 52.3
Lju237A1T66 Lonicera japonica HOM05D005159 ORTHO05D006237 9.3e-32 141.0 137 54.0
Eucgr.I02096 Eucalyptus grandis HOM05D005159 ORTHO05D006237 1.2e-31 140.6 182 46.7
MD17G1070200 Malus domestica HOM05D005159 ORTHO05D006237 1.6e-31 140.2 138 56.5
Cc08_g12050 Coffea canephora HOM05D005159 ORTHO05D006237 2.7e-31 139.4 138 53.6
Dinv33896 Davidia involucrata HOM05D005159 ORTHO05D006237 2.7e-31 139.4 138 54.3
SalBow1G7987 Salvia bowleyana HOM05D005159 ORTHO05D006237 2.7e-31 139.4 138 55.1
CsaV3_5G013180 Cucumis sativus L. HOM05D005159 ORTHO05D006237 4.6e-31 138.7 151 51.0
Aa31LG9G16930 Aethionema arabicum HOM05D005159 ORTHO05D006237 6.0e-31 138.3 152 52.6
EL10Ac7g16490 Beta vulgaris HOM05D005159 ORTHO05D006237 6.0e-31 138.3 168 47.6
Ciclev10012260m.g Citrus clementina HOM05D005159 ORTHO05D006237 6.0e-31 138.3 182 46.7
Nn1g09575 Nelumbo nucifera HOM05D005159 ORTHO05D006237 6.0e-31 138.3 188 44.1
Hund27686 Selenicereus undatus HOM05D005159 ORTHO05D006237 6.0e-31 138.3 165 49.7
Hund27687 Selenicereus undatus HOM05D005159 ORTHO05D006237 6.0e-31 138.3 165 49.7
MSTRG.15424 Avicennia marina HOM05D005159 ORTHO05D006237 7.9e-31 137.9 138 53.6
Mapoly0058s0026 Marchantia polymorpha HOM05D005159 ORTHO05D006237 7.9e-31 137.9 130 54.6
QL02p054338 Quercus lobata HOM05D005159 ORTHO05D006237 1.0e-30 137.5 134 56.0
Actinidia36292 Actinidia chinensis HOM05D005159 ORTHO05D006237 1.3e-30 137.1 134 53.0
Cpa.g.sc70.15 Carica papaya HOM05D005159 ORTHO05D006237 1.3e-30 137.1 138 54.3
AUR62016605 Chenopodium quinoa HOM05D005159 ORTHO05D006237 1.3e-30 137.1 182 46.2
MELO3C020033.2 Cucumis melo HOM05D005159 ORTHO05D006237 1.3e-30 137.1 151 50.3
Thhalv10028147m.g Eutrema salsugineum HOM05D005159 ORTHO05D006237 1.3e-30 137.1 138 56.5
Prupe.3G244000 Prunus persica HOM05D005159 ORTHO05D006237 1.3e-30 137.1 138 54.3
Phvul.008G006700 Phaseolus vulgaris HOM05D005159 ORTHO05D006237 3.0e-30 136.0 182 45.1
THA.LOC104805544 Tarenaya hassleriana HOM05D005159 ORTHO05D006237 3.0e-30 136.0 185 46.5
Actinidia18107 Actinidia chinensis HOM05D005159 ORTHO05D006237 3.9e-30 135.6 138 52.2
Ah.08g217340 Amaranthus hybridus HOM05D005159 ORTHO05D006237 3.9e-30 135.6 151 49.0
Medtr8g085800 Medicago truncatula HOM05D005159 ORTHO05D006237 3.9e-30 135.6 138 57.2
Sed0024356 Sechium edule HOM05D005159 ORTHO05D006237 3.9e-30 135.6 179 45.8
MBI15_g18197_MAGBIO Magnolia biondii HOM05D005159 ORTHO05D006237 5.1e-30 135.2 184 46.2
SEGI_21798 Sequoiadendron giganteum HOM05D005159 ORTHO05D006237 5.1e-30 135.2 134 53.7
BcaC02g09665 Brassica carinata HOM05D005159 ORTHO05D006237 6.7e-30 134.8 138 55.8
C04p45340 Brassica napus HOM05D005159 ORTHO05D006237 6.7e-30 134.8 138 55.8
BolC4t26116H Brassica oleracea HOM05D005159 ORTHO05D006237 6.7e-30 134.8 138 55.8
BraA04t16828Z Brassica rapa HOM05D005159 ORTHO05D006237 6.7e-30 134.8 138 55.8
CDE01G0131 Ceratophyllum demersum HOM05D005159 ORTHO05D006237 6.7e-30 134.8 138 52.2
SGA_v2.0_scaffold10G05141 Striga asiatica HOM05D005159 ORTHO05D006237 6.7e-30 134.8 138 52.2
AT5G38720 Arabidopsis thaliana HOM05D005159 ORTHO05D006237 8.7e-30 134.4 138 55.8
unitig_61.g26382 Utricularia gibba HOM05D005159 ORTHO05D006237 8.7e-30 134.4 138 52.9
Ah.15g094970 Amaranthus hybridus HOM05D005159 ORTHO05D006237 1.5e-29 133.7 185 44.3
AUR62026768 Chenopodium quinoa HOM05D005159 ORTHO05D006237 1.9e-29 133.3 136 52.9
A04p11610 Brassica napus HOM05D005159 ORTHO05D006237 2.5e-29 132.9 138 55.1
Glyma.13G171200 Glycine max HOM05D005159 ORTHO05D006237 3.3e-29 132.5 136 53.7
Sp7g03200 Schrenkiella parvula HOM05D005159 ORTHO05D006237 3.3e-29 132.5 138 55.1
AL7G51700 Arabidopsis lyrata HOM05D005159 ORTHO05D006237 4.3e-29 132.1 137 54.7
RcHm_v2.0_Chr2g0163971 Rosa chinensis HOM05D005159 ORTHO05D006237 5.6e-29 131.7 137 49.6
BcaB06g27239 Brassica carinata HOM05D005159 ORTHO05D006237 7.4e-29 131.3 182 47.3
CANSAT21G0179 Cannabis sativa HOM05D005159 ORTHO05D006237 7.4e-29 131.3 139 52.5
Oeu062202.1 Olea europaea HOM05D005159 ORTHO05D006237 7.4e-29 131.3 138 52.2
FvH4_6g45790 Fragaria vesca HOM05D005159 ORTHO05D006237 9.6e-29 131.0 157 45.9
FAN09G0042 Fragaria x ananassa HOM05D005159 ORTHO05D006237 9.6e-29 131.0 157 45.9
Glyma.07G204700 Glycine max HOM05D005159 ORTHO05D006237 1.3e-28 130.6 182 45.6
arahy.Tifrunner.gnm1.ann1.MEN3PN Arachis hypogaea HOM05D005159 ORTHO05D006237 1.6e-28 130.2 138 51.4
Manes.01G106500 Manihot esculenta HOM05D005159 ORTHO05D006237 1.6e-28 130.2 155 47.7
Carub.0007s3714 Capsella rubella HOM05D005159 ORTHO05D006237 2.1e-28 129.8 138 52.2
CiPaw.03G007500 Carya illinoinensis HOM05D005159 ORTHO05D006237 2.8e-28 129.4 135 51.9
Medtr4g051625 Medicago truncatula HOM05D005159 ORTHO05D006237 2.8e-28 129.4 186 44.1
Thecc.04G145900 Theobroma cacao HOM05D005159 ORTHO05D006237 4.8e-28 128.6 138 51.4
PSO017G6426 Papaver somniferum HOM05D005159 ORTHO05D006237 6.2e-28 128.3 138 49.3
Potri.017G108700 Populus trichocarpa HOM05D005159 ORTHO05D006237 6.2e-28 128.3 138 49.3
Atru.chr11.1725 Acer truncatum HOM05D005159 ORTHO05D006237 8.1e-28 127.9 134 51.5
Gohir.A13G118100 Gossypium hirsutum HOM05D005159 ORTHO05D006237 8.1e-28 127.9 138 50.0
MBI15_g38433_MAGBIO Magnolia biondii HOM05D005159 ORTHO05D006237 8.1e-28 127.9 139 51.1
Sabra04G0075100 Salix brachista HOM05D005159 ORTHO05D006237 8.1e-28 127.9 138 48.6
CDE02G0002 Ceratophyllum demersum HOM05D005159 ORTHO05D006237 1.1e-27 127.5 136 49.3
FAN02G2008 Fragaria x ananassa HOM05D005159 ORTHO05D006237 1.1e-27 127.5 137 47.4
Psat7g186040 Pisum sativum HOM05D002527 ORTHO05D002865 1.1e-27 127.5 123 58.5
DCAR_026285 Daucus carota HOM05D005159 ORTHO05D006237 1.4e-27 127.1 138 50.0
Gorai.013G136600 Gossypium raimondii HOM05D005159 ORTHO05D006237 1.8e-27 126.7 138 50.0
TPR.G37714 Trifolium pratense HOM05D005159 ORTHO05D006237 1.8e-27 126.7 137 53.3
PGR004G1892 Punica granatum HOM05D005159 ORTHO05D006237 2.4e-27 126.3 158 44.9
Ca_26327_v3 Cicer arietinum L. HOM05D005159 ORTHO05D006237 3.1e-27 125.9 137 51.8
ECA240G3626 Erigeron canadensis HOM05D005159 ORTHO05D006237 3.1e-27 125.9 140 48.6
Medtr1g090650 Medicago truncatula HOM05D005159 ORTHO05D006237 4.0e-27 125.6 139 51.8
Gohir.D13G121900 Gossypium hirsutum HOM05D005159 ORTHO05D006237 5.3e-27 125.2 138 49.3
Lsat_1_v5_gn_8_24161 Lactuca sativa HOM05D005159 ORTHO05D006237 5.3e-27 125.2 142 48.6
Potri.004G106900 Populus trichocarpa HOM05D005159 ORTHO05D006237 6.9e-27 124.8 138 47.8
Duzib211G0079 Durio zibethinus HOM05D005159 ORTHO05D006237 9.0e-27 124.4 138 48.6
CBR_g4867 Chara braunii HOM05D005159 ORTHO05D006237 1.5e-26 123.6 139 49.6
FAN05G5180 Fragaria x ananassa HOM05D005159 ORTHO05D006237 2.0e-26 123.2 170 42.4
HanXRQChr03g0078031 Helianthus annuus HOM05D005159 ORTHO05D006237 2.0e-26 123.2 140 49.3
SMO196G0176 Selaginella moellendorffii HOM05D005159 ORTHO05D006237 3.4e-26 122.5 157 43.9
AUR62011452 Chenopodium quinoa HOM05D005159 ORTHO05D006237 5.8e-26 121.7 188 40.4
C06p18340 Brassica napus HOM05D005159 ORTHO05D006237 1.3e-25 120.6 183 47.0
BolC6t37046H Brassica oleracea HOM05D005159 ORTHO05D006237 1.3e-25 120.6 183 47.0
PSO478G0642 Papaver somniferum HOM05D005159 ORTHO05D006237 1.7e-25 120.2 138 47.8
HPP92_015315 Vanilla planifolia HOM05D005159 ORTHO05D006237 3.8e-25 119.0 159 44.0
arahy.Tifrunner.gnm1.ann1.VE7QKQ Arachis hypogaea HOM05D005159 ORTHO05D006237 4.9e-25 118.6 138 47.8
Sopen02g034320 Solanum pennellii HOM05D005159 ORTHO05D006237 6.4e-25 118.2 138 47.8
BcaC08g44401 Brassica carinata HOM05D005159 ORTHO05D006237 2.4e-24 116.3 137 51.8
Os02g0728700 Oryza sativa ssp. japonica HOM05D005159 ORTHO05D006237 2.4e-24 116.3 139 48.2
MCO13G254 Micromonas commoda HOM05D005159 ORTHO05D006237 3.2e-24 115.9 147 44.9
Aqoxy3G00614 Aquilegia oxysepala HOM05D005159 ORTHO05D006237 4.2e-24 115.5 138 45.7
ATR0691G244 Amborella trichopoda HOM05D005159 ORTHO05D006237 9.3e-24 114.4 138 47.8
Rhsim08G0081100 Rhododendron simsii HOM05D005159 ORTHO05D006237 9.3e-24 114.4 138 46.4
vmacro18090 Vaccinium macrocarpon HOM05D005159 ORTHO05D006237 1.0e-22 110.9 138 44.9
VMungo1383G3720 Vigna mungo HOM05D005159 ORTHO05D006237 1.8e-22 110.2 182 40.7
Lj6g0020881 Lotus japonicus HOM05D005159 ORTHO05D006237 6.7e-22 108.2 138 46.4
Phvul.001G061500 Phaseolus vulgaris HOM05D005159 ORTHO05D006237 6.7e-22 108.2 182 40.7
Lalb_Chr18g0059201 Lupinus albus HOM05D005159 ORTHO05D006237 1.5e-21 107.1 139 47.5
Zm00001eb253420 Zea mays HOM05D005159 ORTHO05D006237 3.3e-21 105.9 182 39.0
CSS0013880 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 7.4e-21 104.8 109 53.2
CSS0007706 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 6.2e-20 101.7 109 52.3
CSS0044288 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 6.2e-20 101.7 109 52.3
TAR371G0967 Trochodendron aralioides HOM05D005159 ORTHO05D006237 1.1e-19 100.9 109 51.4
SMO234G0023 Selaginella moellendorffii HOM05D005159 ORTHO05D006237 2.4e-19 99.8 110 47.3
arahy.Tifrunner.gnm1.ann1.3J3UL0 Arachis hypogaea HOM05D005159 ORTHO05D006237 3.1e-19 99.4 133 42.9
AagrBONN_evm.TU.Sc2ySwM_369.363 Anthoceros agrestis HOM05D005159 ORTHO05D006237 1.5e-18 97.1 164 42.1
TPR.G28602 Trifolium pratense HOM05D005159 ORTHO05D006237 1.5e-18 97.1 157 42.7
FAN14G1445 Fragaria x ananassa HOM05D005159 ORTHO05D006237 2.0e-18 96.7 103 51.5
CARHR291790 Cardamine hirsuta HOM05D005159 ORTHO05D006237 2.2e-17 93.2 140 42.9
TAR629G0318 Trochodendron aralioides HOM05D005159 ORTHO05D006237 2.2e-17 93.2 134 42.5
Nn8g41096 Nelumbo nucifera HOM05D005159 ORTHO05D006237 4.9e-17 92.0 138 39.9
CBR_g52693 Chara braunii HOM05D005159 ORTHO05D006237 9.3e-16 87.8 173 35.8
Cre01.g052200 Chlamydomonas reinhardtii HOM05D005159 ORTHO05D006237 2.1e-15 86.7 139 38.1
Haze_14082 Corylus avellana HOM05D005159 ORTHO05D006237 2.1e-15 86.7 106 47.2
COL.COLO4_37042 Corchorus olitorius HOM05D005159 ORTHO05D006237 2.7e-15 86.3 163 37.4
CSS0028445 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 1.9e-13 80.1 93 51.6
Lj7A7T32 Lonicera japonica HOM05D005159 ORTHO05D006237 2.5e-13 79.7 74 50.0
AUR62013504 Chenopodium quinoa HOM05D000258 ORTHO05D006237 6.3e-12 75.1 91 50.5
TAR629G0746 Trochodendron aralioides HOM05D005159 ORTHO05D006237 1.4e-11 73.9 110 39.1
Medtr8g085830 Medicago truncatula HOM05D005159 ORTHO05D006237 8.5e-09 64.7 102 43.1
PRCOL_00005361 Prasinoderma coloniale HOM05D005159 ORTHO05D006237 1.6e-07 60.5 137 34.3


User provided reference genes

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