Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_23750 Physcomitrium patens HOM05D003568 ORTHO05D004104 0.0e+00 1298.9 700 100.0
Mapoly0070s0084 Marchantia polymorpha HOM05D003568 ORTHO05D004104 1.1e-157 561.2 812 44.3
SEGI_32899 Sequoiadendron giganteum HOM05D003568 ORTHO05D004104 4.3e-154 549.3 826 40.8
AagrBONN_evm.TU.Sc2ySwM_117.807 Anthoceros agrestis HOM05D003568 ORTHO05D004104 5.3e-152 542.3 811 42.4
vmacro13231 Vaccinium macrocarpon HOM05D003568 ORTHO05D004104 7.6e-151 538.5 829 41.3
Medtr8g023330 Medicago truncatula HOM05D003568 ORTHO05D004104 1.7e-150 537.3 807 41.0
Sc03g0008850 Simmondsia chinensis HOM05D003568 ORTHO05D004104 2.2e-150 537.0 828 40.8
Ca_23448_v3 Cicer arietinum L. HOM05D003568 ORTHO05D004104 8.5e-150 535.0 816 40.9
QL04p055468 Quercus lobata HOM05D003568 ORTHO05D004104 2.5e-149 533.5 820 40.9
ATR0829G125 Amborella trichopoda HOM05D003568 ORTHO05D004104 3.2e-149 533.1 820 41.3
CSS0027239 Camellia sinensis var. sinensis HOM05D003568 ORTHO05D004104 3.2e-149 533.1 819 41.0
Gohir.A12G275800 Gossypium hirsutum HOM05D003568 ORTHO05D004104 4.2e-149 532.7 827 40.5
Lalb_Chr17g0343201 Lupinus albus HOM05D003568 ORTHO05D004104 5.5e-149 532.3 812 41.1
Gohir.D12G276500 Gossypium hirsutum HOM05D003568 ORTHO05D004104 7.2e-149 531.9 827 40.5
Gorai.008G297000 Gossypium raimondii HOM05D003568 ORTHO05D004104 7.2e-149 531.9 827 40.5
SMO329G0014 Selaginella moellendorffii HOM05D003568 ORTHO05D004104 7.2e-149 531.9 819 40.9
Glyma.07G046100 Glycine max HOM05D003568 ORTHO05D004104 2.7e-148 530.0 820 40.9
THA.LOC104811828 Tarenaya hassleriana HOM05D003568 ORTHO05D004104 4.6e-148 529.3 825 40.4
Aqoxy2G00934 Aquilegia oxysepala HOM05D003568 ORTHO05D004104 7.9e-148 528.5 821 40.1
CANSAT56G2290 Cannabis sativa HOM05D003568 ORTHO05D004104 7.9e-148 528.5 828 40.6
Prupe.2G177200 Prunus persica HOM05D003568 ORTHO05D004104 1.0e-147 528.1 826 40.8
CiPaw.02G034600 Carya illinoinensis HOM05D003568 ORTHO05D004104 1.3e-147 527.7 826 40.6
GSVIVG01026964001 Vitis vinifera HOM05D003568 ORTHO05D004104 1.3e-147 527.7 827 39.9
Ciclev10018853m.g Citrus clementina HOM05D003568 ORTHO05D004104 1.8e-147 527.3 825 40.4
Thecc.06G000300 Theobroma cacao HOM05D003568 ORTHO05D004104 1.8e-147 527.3 827 40.3
Manes.05G029701 Manihot esculenta HOM05D003568 ORTHO05D004104 2.3e-147 526.9 831 40.6
PSO266G0033 Papaver somniferum HOM05D003568 ORTHO05D004104 3.0e-147 526.6 831 40.2
MD01G1071200 Malus domestica HOM05D003568 ORTHO05D004104 3.9e-147 526.2 825 40.8
TWI59G1008 Tripterygium wilfordii HOM05D003568 ORTHO05D004104 5.1e-147 525.8 825 39.8
Lalb_Chr18g0044861 Lupinus albus HOM05D003568 ORTHO05D004104 8.7e-147 525.0 806 40.6
Phvul.010G123000 Phaseolus vulgaris HOM05D003568 ORTHO05D004104 8.7e-147 525.0 820 40.9
EL10Ac5g12970 Beta vulgaris HOM05D003568 ORTHO05D004104 1.5e-146 524.2 826 40.1
Potri.014G090100 Populus trichocarpa HOM05D003568 ORTHO05D004104 1.5e-146 524.2 834 40.2
VMungo0331G1030 Vigna mungo HOM05D003568 ORTHO05D004104 1.5e-146 524.2 820 40.0
arahy.Tifrunner.gnm1.ann1.Z56S5U Arachis hypogaea HOM05D003568 ORTHO05D004104 1.9e-146 523.9 812 40.5
PGR042G3260 Punica granatum HOM05D003568 ORTHO05D004104 1.9e-146 523.9 818 40.5
FAN03G0275 Fragaria x ananassa HOM05D003568 ORTHO05D004104 2.5e-146 523.5 822 40.6
Atru.chr5.579 Acer truncatum HOM05D003568 ORTHO05D004104 3.3e-146 523.1 823 40.6
Nn1g01682 Nelumbo nucifera HOM05D003568 ORTHO05D004104 3.3e-146 523.1 831 39.8
FvH4_7g15330 Fragaria vesca HOM05D003568 ORTHO05D004104 4.3e-146 522.7 822 40.6
FAN06G0334 Fragaria x ananassa HOM05D003568 ORTHO05D004104 4.3e-146 522.7 822 40.6
Duzib205G0971 Durio zibethinus HOM05D003568 ORTHO05D004104 7.4e-146 521.9 827 39.8
FAN01G2394 Fragaria x ananassa HOM05D003568 ORTHO05D004104 7.4e-146 521.9 822 40.5
Lj3g0009129 Lotus japonicus HOM05D003568 ORTHO05D004104 1.3e-145 521.2 818 40.8
RcHm_v2.0_Chr1g0357661 Rosa chinensis HOM05D003568 ORTHO05D004104 1.6e-145 520.8 822 40.5
Sed0000810 Sechium edule HOM05D003568 ORTHO05D004104 1.6e-145 520.8 827 39.9
DCAR_006948 Daucus carota HOM05D003568 ORTHO05D004104 2.2e-145 520.4 824 40.3
CSS0044044 Camellia sinensis var. sinensis HOM05D003568 ORTHO05D004104 4.8e-145 519.2 817 40.4
Migut.N01148 Erythranthe guttata HOM05D003568 ORTHO05D004104 4.8e-145 519.2 802 41.3
CSS0021365 Camellia sinensis var. sinensis HOM05D003568 ORTHO05D004104 6.3e-145 518.8 817 40.4
FAN06G4614 Fragaria x ananassa HOM05D003568 ORTHO05D004104 1.1e-144 518.1 825 40.4
Carub.0006s1087 Capsella rubella HOM05D003568 ORTHO05D004104 1.4e-144 517.7 827 40.1
Cpa.g.sc184.32 Carica papaya HOM05D003568 ORTHO05D004104 1.4e-144 517.7 834 40.6
CsaV3_3G008620 Cucumis sativus L. HOM05D003568 ORTHO05D004104 1.4e-144 517.7 822 39.8
Manes.01G252500 Manihot esculenta HOM05D003568 ORTHO05D004104 1.4e-144 517.7 825 39.6
Potri.002G164100 Populus trichocarpa HOM05D003568 ORTHO05D004104 1.4e-144 517.7 822 40.5
MELO3C006082.2 Cucumis melo HOM05D003568 ORTHO05D004104 1.8e-144 517.3 826 40.1
Os12g0238100 Oryza sativa ssp. japonica HOM05D003568 ORTHO05D004104 1.8e-144 517.3 806 39.7
Hund23292 Selenicereus undatus HOM05D003568 ORTHO05D004104 2.4e-144 516.9 817 39.9
ClCG05G001260 Citrullus lanatus HOM05D003568 ORTHO05D004104 4.1e-144 516.2 838 39.6
MSTRG.27756 Avicennia marina HOM05D003568 ORTHO05D004104 6.9e-144 515.4 821 40.7
Gohir.D09G046200 Gossypium hirsutum HOM05D003568 ORTHO05D004104 6.9e-144 515.4 827 39.7
Gorai.006G064200 Gossypium raimondii HOM05D003568 ORTHO05D004104 6.9e-144 515.4 827 39.7
Sp6g31270 Schrenkiella parvula HOM05D003568 ORTHO05D004104 1.2e-143 514.6 828 40.3
Eucgr.E00099 Eucalyptus grandis HOM05D003568 ORTHO05D004104 2.0e-143 513.8 831 39.1
Aa31LG3G14860 Aethionema arabicum HOM05D003568 ORTHO05D004104 2.6e-143 513.5 822 40.5
Zm00001eb133590 Zea mays HOM05D003568 ORTHO05D004104 2.6e-143 513.5 802 40.5
ECA236G4463 Erigeron canadensis HOM05D003568 ORTHO05D004104 3.4e-143 513.1 815 40.2
Sabra14G0065400 Salix brachista HOM05D003568 ORTHO05D004104 3.4e-143 513.1 836 39.4
AL6G23170 Arabidopsis lyrata HOM05D003568 ORTHO05D004104 4.5e-143 512.7 821 39.7
Duzib068G0821 Durio zibethinus HOM05D003568 ORTHO05D004104 4.5e-143 512.7 820 40.0
MD07G1131500 Malus domestica HOM05D003568 ORTHO05D004104 4.5e-143 512.7 826 40.6
arahy.Tifrunner.gnm1.ann1.PRYL24 Arachis hypogaea HOM05D003568 ORTHO05D004104 2.2e-142 510.4 812 40.0
PSO478G3452 Papaver somniferum HOM05D003568 ORTHO05D004104 2.2e-142 510.4 865 38.6
Atru.chr5.561 Acer truncatum HOM05D003568 ORTHO05D004104 2.9e-142 510.0 846 39.5
Thecc.03G000600 Theobroma cacao HOM05D003568 ORTHO05D004104 2.9e-142 510.0 827 39.3
TPR.G21815 Trifolium pratense HOM05D003568 ORTHO05D004104 3.8e-142 509.6 763 41.4
Thhalv10012686m.g Eutrema salsugineum HOM05D003568 ORTHO05D004104 6.5e-142 508.8 832 40.1
Sed0017270 Sechium edule HOM05D003568 ORTHO05D004104 8.5e-142 508.4 823 39.2
COL.COLO4_15385 Corchorus olitorius HOM05D003568 ORTHO05D004104 1.1e-141 508.1 738 41.3
CARHR200740 Cardamine hirsuta HOM05D003568 ORTHO05D004104 1.4e-141 507.7 822 39.8
HanXRQChr04g0120781 Helianthus annuus HOM05D003568 ORTHO05D004104 2.5e-141 506.9 812 40.0
Nn6g35074 Nelumbo nucifera HOM05D003568 ORTHO05D004104 2.5e-141 506.9 792 39.6
Oeu015218.3 Olea europaea HOM05D003568 ORTHO05D004104 3.2e-141 506.5 820 39.8
Cc08_g01740 Coffea canephora HOM05D003568 ORTHO05D004104 4.2e-141 506.1 818 40.0
AT5G12370 Arabidopsis thaliana HOM05D003568 ORTHO05D004104 9.4e-141 505.0 820 39.3
Glyma.16G014200 Glycine max HOM05D003568 ORTHO05D004104 9.4e-141 505.0 790 40.4
Nitab4.5_0000171g0380 Nicotiana tabacum HOM05D003568 ORTHO05D004104 9.4e-141 505.0 821 40.1
BcaB01g05405 Brassica carinata HOM05D003568 ORTHO05D004104 2.1e-140 503.8 808 40.3
Solyc03g095410.3 Solanum lycopersicum HOM05D003568 ORTHO05D004104 6.1e-140 502.3 822 40.0
PGSC0003DMG400005252 Solanum tuberosum HOM05D003568 ORTHO05D004104 1.0e-139 501.5 823 40.1
BraA03t09896Z Brassica rapa HOM05D003568 ORTHO05D004104 1.8e-139 500.7 819 40.0
BolC3t13154H Brassica oleracea HOM05D003568 ORTHO05D004104 2.3e-139 500.4 819 39.9
BolC9t59286H Brassica oleracea HOM05D003568 ORTHO05D004104 2.3e-139 500.4 826 38.9
TAR375G0541 Trochodendron aralioides HOM05D003568 ORTHO05D004104 2.3e-139 500.4 832 39.9
A10p25450 Brassica napus HOM05D003568 ORTHO05D004104 3.0e-139 500.0 820 39.5
BraA10t44609Z Brassica rapa HOM05D003568 ORTHO05D004104 3.0e-139 500.0 820 39.5
C09p64520 Brassica napus HOM05D003568 ORTHO05D004104 3.9e-139 499.6 826 38.9
HPP92_003241 Vanilla planifolia HOM05D003568 ORTHO05D004104 3.9e-139 499.6 820 38.0
Peaxi162Scf00073g02118 Petunia axillaris HOM05D003568 ORTHO05D004104 5.1e-139 499.2 836 39.2
CAN.G165.6 Capsicum annuum HOM05D003568 ORTHO05D004104 1.5e-138 497.7 823 39.6
Sopen03g025390 Solanum pennellii HOM05D003568 ORTHO05D004104 2.0e-138 497.3 823 39.6
Rhsim07G0010700 Rhododendron simsii HOM05D003568 ORTHO05D004104 7.4e-138 495.4 914 37.1
Hund02118 Selenicereus undatus HOM05D003568 ORTHO05D004104 6.3e-137 492.3 749 41.3
C03p06540 Brassica napus HOM05D003568 ORTHO05D004104 8.2e-137 491.9 843 38.8
A03p05590 Brassica napus HOM05D003568 ORTHO05D004104 1.4e-136 491.1 844 38.9
AUR62030738 Chenopodium quinoa HOM05D003568 ORTHO05D004104 2.4e-136 490.3 859 38.5
AUR62036376 Chenopodium quinoa HOM05D003568 ORTHO05D004104 5.3e-136 489.2 824 39.3
Sabra02G0147000 Salix brachista HOM05D003568 ORTHO05D004104 3.4e-135 486.5 897 37.8
SGA_v2.0_scaffold67G22717 Striga asiatica HOM05D003568 ORTHO05D004104 3.4e-135 486.5 819 39.3
HanXRQChr02g0038861 Helianthus annuus HOM05D003568 ORTHO05D004104 7.7e-135 485.3 803 38.7
HanXRQChr13g0415591 Helianthus annuus HOM05D003568 ORTHO05D004104 7.7e-135 485.3 810 38.5
Sed0024683 Sechium edule HOM05D003568 ORTHO05D004104 1.4e-133 481.1 689 43.7
unitig_21.g20340 Utricularia gibba HOM05D003568 ORTHO05D004104 1.4e-133 481.1 834 38.5
SalBow6G0922 Salvia bowleyana HOM05D003568 ORTHO05D004104 7.2e-133 478.8 818 39.5
SalBow6G4826 Salvia bowleyana HOM05D003568 ORTHO05D004104 9.4e-133 478.4 819 39.7
ECA238G2843 Erigeron canadensis HOM05D003568 ORTHO05D004104 2.6e-130 470.3 814 38.0
Lsat_1_v5_gn_3_138540 Lactuca sativa HOM05D003568 ORTHO05D004104 1.3e-129 468.0 812 37.4
Lj7A507T47 Lonicera japonica HOM05D003568 ORTHO05D004104 2.2e-126 457.2 845 36.6
Lj9A588G62 Lonicera japonica HOM05D003568 ORTHO05D004104 1.9e-125 454.1 824 37.1
Peaxi162Scf00154g00427 Petunia axillaris HOM05D003568 ORTHO05D004104 1.0e-123 448.4 856 36.4
CDE07G1174 Ceratophyllum demersum HOM05D003568 ORTHO05D004104 1.5e-122 444.5 718 39.3
Haze_15562 Corylus avellana HOM05D003568 ORTHO05D004104 7.0e-120 435.6 889 34.5
Lsat_1_v5_gn_7_3960 Lactuca sativa HOM05D003568 ORTHO05D004104 1.2e-119 434.9 819 36.6
Dinv27398 Davidia involucrata HOM05D003568 ORTHO05D004104 4.5e-119 433.0 740 37.8
Nitab4.5_0010629g0020 Nicotiana tabacum HOM05D003568 ORTHO05D004104 1.0e-118 431.8 805 36.6
Psat4g164920 Pisum sativum HOM05D003568 ORTHO05D004104 4.2e-117 426.4 805 36.6
Sopen11g021810 Solanum pennellii HOM05D003568 ORTHO05D004104 5.2e-115 419.5 779 36.6
FAN10G2647 Fragaria x ananassa HOM05D003568 ORTHO05D004104 1.7e-113 414.5 592 42.6
Nitab4.5_0006926g0010 Nicotiana tabacum HOM05D003568 ORTHO05D004104 2.0e-111 407.5 739 37.3
Pp3c17_2120 Physcomitrium patens HOM05D003568 ORTHO05D004104 3.5e-111 406.8 770 37.4
Gohir.A09G045200 Gossypium hirsutum HOM05D003568 ORTHO05D004104 6.1e-108 396.0 725 36.8
Pp3c7_5960 Physcomitrium patens HOM05D003568 ORTHO05D004104 6.1e-108 396.0 701 38.9
CBR_g38471 Chara braunii HOM05D003568 ORTHO05D004104 3.4e-106 390.2 879 34.8
FAN10G2437 Fragaria x ananassa HOM05D003568 ORTHO05D004104 1.1e-104 385.2 772 35.4
TAR374G0165 Trochodendron aralioides HOM05D003568 ORTHO05D004104 2.3e-102 377.5 566 41.2
Oeu036591.1 Olea europaea HOM05D003568 ORTHO05D004104 4.7e-100 369.8 819 33.8
CAN.G45.13 Capsicum annuum HOM05D003568 ORTHO05D004104 2.6e-98 364.0 742 35.4
Solyc11g050710.2 Solanum lycopersicum HOM05D003568 ORTHO05D004104 2.9e-97 360.5 761 34.2
AagrBONN_evm.TU.Sc2ySwM_362.1439 Anthoceros agrestis HOM05D003568 ORTHO05D004104 1.4e-96 358.2 827 33.9
MBI03_g34513_MAGBIO Magnolia biondii HOM05D003568 ORTHO05D004104 7.0e-96 355.9 554 39.7
Sopen10g009070 Solanum pennellii HOM05D003568 ORTHO05D004104 3.9e-94 350.1 774 34.2
Dinv09575 Davidia involucrata HOM05D003568 ORTHO05D004104 1.5e-85 321.6 304 55.3
COL.COLO4_22311 Corchorus olitorius HOM05D003568 ORTHO05D004104 2.1e-84 317.8 660 34.1
Sopen10g009080 Solanum pennellii HOM05D003568 ORTHO05D004104 8.6e-70 269.2 791 30.6
Sopen10g009040 Solanum pennellii HOM05D003568 ORTHO05D004104 2.0e-66 258.1 803 29.8
Solyc10g019110.2 Solanum lycopersicum HOM05D003568 ORTHO05D004104 1.3e-57 228.8 524 34.4
Sopen10g009060 Solanum pennellii HOM05D003568 ORTHO05D004104 2.2e-57 228.0 306 44.4
Solyc10g019140.1 Solanum lycopersicum HOM05D003568 ORTHO05D004104 6.0e-55 219.9 536 34.0
Nitab4.5_0004323g0080 Nicotiana tabacum HOM05D003568 ORTHO05D004104 1.8e-54 218.4 537 32.2
Dinv09574 Davidia involucrata HOM05D003568 ORTHO05D004104 1.2e-50 205.7 510 30.8
Sopen00g003310 Solanum pennellii HOM05D003568 ORTHO05D004104 1.5e-50 205.3 742 28.2
PSO478G4032 Papaver somniferum HOM05D003568 ORTHO05D004104 1.6e-44 185.3 495 31.7
CAN.G77.8 Capsicum annuum HOM05D003568 ORTHO05D004104 6.2e-44 183.3 263 42.6
Ah.12g059250 Amaranthus hybridus HOM05D003568 ORTHO05D004104 2.3e-38 164.9 248 39.5
Psat3g201360 Pisum sativum HOM05D003568 ORTHO05D004104 5.9e-26 123.6 184 42.9
Sopen00g004930 Solanum pennellii HOM05D003568 ORTHO05D004104 2.1e-23 115.2 240 35.4
SEGI_20614 Sequoiadendron giganteum HOM05D003568 ORTHO05D004104 5.1e-22 110.5 206 34.0
CDE06G2354 Ceratophyllum demersum HOM05D003568 ORTHO05D004104 5.7e-21 107.1 121 44.6
Oeu015217.1 Olea europaea HOM05D003568 ORTHO05D004104 3.4e-18 97.8 83 61.4
Ah.12g059260 Amaranthus hybridus HOM05D003568 ORTHO05D004104 8.5e-17 93.2 82 58.5
Solyc10g019130.3 Solanum lycopersicum HOM05D003568 ORTHO05D004104 1.1e-16 92.8 127 41.7
MCO10G270 Micromonas commoda HOM05D003568 ORTHO05D004104 3.0e-14 84.7 114 41.2
SEGI_22298 Sequoiadendron giganteum HOM05D003568 ORTHO05D004104 3.0e-14 84.7 111 45.0
Cre12.g551801 Chlamydomonas reinhardtii HOM05D003568 ORTHO05D004104 2.6e-13 81.6 199 27.6
PRCOL_00002354 Prasinoderma coloniale HOM05D003568 ORTHO05D004104 3.3e-13 81.3 788 20.6
Haze_19031 Corylus avellana HOM05D003568 ORTHO05D004104 1.0e-09 69.7 252 26.6
Hma1.2p1_0335F.1_g128910 Hydrangea macrophylla HOM05D003568 ORTHO05D004104 3.8e-09 67.8 82 41.5
Solyc10g019100.2 Solanum lycopersicum HOM05D003568 ORTHO05D004104 8.5e-09 66.6 52 63.5
RcHm_v2.0_Chr1g0375581 Rosa chinensis HOM05D003568 ORTHO05D004104 1.5e-08 65.9 89 43.8
Glyma.07G162100 Glycine max HOM05D003568 ORTHO05D004104 1.6e-07 62.4 100 35.0
RcHm_v2.0_Chr1g0375651 Rosa chinensis HOM05D003568 ORTHO05D004104 3.0e-06 58.2 60 53.3


User provided reference genes

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