Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_23690 Physcomitrium patens HOM05D001922 ORTHO05D001441 9.4e-128 460.3 249 100.0
Pp3c4_24970 Physcomitrium patens HOM05D001922 ORTHO05D001441 2.6e-37 159.8 156 50.6
Mapoly0029s0035 Marchantia polymorpha HOM05D001922 ORTHO05D001441 1.6e-18 97.4 187 28.3
Carub.0004s0556 Capsella rubella HOM05D001922 ORTHO05D001441 3.9e-17 92.8 133 37.6
SEGI_41389 Sequoiadendron giganteum HOM05D001922 ORTHO05D001441 2.8e-15 86.7 148 30.4
AT2G25770 Arabidopsis thaliana HOM05D001922 ORTHO05D001441 3.7e-15 86.3 167 31.1
TAR636G2649 Trochodendron aralioides HOM05D001922 ORTHO05D001441 6.3e-15 85.5 160 30.0
Oeu038811.1 Olea europaea HOM05D000396 ORTHO05D001441 2.4e-14 83.6 140 34.3
THA.LOC104803751 Tarenaya hassleriana HOM05D001922 ORTHO05D001441 2.4e-14 83.6 167 31.1
SEGI_03891 Sequoiadendron giganteum HOM05D001922 ORTHO05D001441 3.1e-14 83.2 153 25.5
Potri.018G046100 Populus trichocarpa HOM05D001922 ORTHO05D001441 4.1e-14 82.8 154 31.8
CARHR115470 Cardamine hirsuta HOM05D001922 ORTHO05D001441 7.0e-14 82.0 140 33.6
A03p61620 Brassica napus HOM05D001922 ORTHO05D001441 1.2e-13 81.3 151 33.8
CiPaw.03G226300 Carya illinoinensis HOM05D001922 ORTHO05D001441 1.2e-13 81.3 145 33.1
BolC7t46382H Brassica oleracea HOM05D001922 ORTHO05D001441 1.6e-13 80.9 151 33.1
PSO210G2147 Papaver somniferum HOM05D001922 ORTHO05D001441 1.6e-13 80.9 170 27.1
Lj1P1172T49 Lonicera japonica HOM05D001922 ORTHO05D001441 2.6e-13 80.1 142 31.7
Potri.006G237100 Populus trichocarpa HOM05D001922 ORTHO05D001441 2.6e-13 80.1 133 33.1
SEGI_16616 Sequoiadendron giganteum HOM05D001922 ORTHO05D001441 3.5e-13 79.7 150 26.0
Sabra18G0044900 Salix brachista HOM05D001922 ORTHO05D001441 4.5e-13 79.3 166 30.1
BraA03t15204Z Brassica rapa HOM05D001922 ORTHO05D001441 5.9e-13 79.0 151 33.1
CDE05G3443 Ceratophyllum demersum HOM05D000299 ORTHO05D000079 5.9e-13 79.0 172 29.7
Carub.0004s0555 Capsella rubella HOM05D001922 ORTHO05D001441 7.7e-13 78.6 158 31.0
Cfa003197 Carpinus fangiana HOM05D001922 ORTHO05D001441 7.7e-13 78.6 143 34.3
HanXRQChr11g0352341 Helianthus annuus HOM05D001922 ORTHO05D001441 1.3e-12 77.8 144 31.2
Oeu038809.1 Olea europaea HOM05D001922 ORTHO05D001441 1.3e-12 77.8 144 31.2
Eucgr.C03777 Eucalyptus grandis HOM05D001922 ORTHO05D001441 1.7e-12 77.4 162 34.0
Solyc08g066420.1 Solanum lycopersicum HOM05D001922 ORTHO05D001441 1.7e-12 77.4 150 32.0
SGA_v2.0_scaffold103G30024 Striga asiatica HOM05D001922 ORTHO05D001441 1.7e-12 77.4 123 33.3
Eucgr.C03776 Eucalyptus grandis HOM05D001922 ORTHO05D001441 2.2e-12 77.0 182 30.2
Eucgr.C03778 Eucalyptus grandis HOM05D001922 ORTHO05D001441 2.2e-12 77.0 162 34.0
Sabra06G0185200 Salix brachista HOM05D001922 ORTHO05D001441 2.2e-12 77.0 133 32.3
SEGI_07353 Sequoiadendron giganteum HOM05D001922 ORTHO05D001441 2.9e-12 76.6 128 31.2
A08p17860 Brassica napus HOM05D001922 ORTHO05D001441 3.8e-12 76.3 156 31.4
BolC3t20993H Brassica oleracea HOM05D001922 ORTHO05D001441 3.8e-12 76.3 156 31.4
BraA08t33738Z Brassica rapa HOM05D001922 ORTHO05D001441 3.8e-12 76.3 156 31.4
ECA248G3227 Erigeron canadensis HOM05D001922 ORTHO05D001441 5.0e-12 75.9 151 29.1
Eucgr.C03766 Eucalyptus grandis HOM05D001922 ORTHO05D001441 5.0e-12 75.9 184 29.9
Thhalv10002295m.g Eutrema salsugineum HOM05D001922 ORTHO05D001441 5.0e-12 75.9 142 30.3
MBI16_g18432_MAGBIO Magnolia biondii HOM05D001922 ORTHO05D001441 5.0e-12 75.9 149 30.9
CDE02G4065 Ceratophyllum demersum HOM05D001922 ORTHO05D001441 6.5e-12 75.5 151 25.8
Lj2g0013480 Lotus japonicus HOM05D001922 ORTHO05D001441 6.5e-12 75.5 150 32.7
Aqoxy7G01476 Aquilegia oxysepala HOM05D001922 ORTHO05D001441 8.5e-12 75.1 148 29.1
AL4G17440 Arabidopsis lyrata HOM05D001922 ORTHO05D001441 8.5e-12 75.1 160 30.6
Gohir.D10G243100 Gossypium hirsutum HOM05D003256 ORTHO05D001441 1.1e-11 74.7 183 27.3
Sopen08g020230 Solanum pennellii HOM05D001922 ORTHO05D001441 1.1e-11 74.7 150 32.0
ATR0618G299 Amborella trichopoda HOM05D003256 ORTHO05D001441 1.5e-11 74.3 162 27.8
Thhalv10026440m.g Eutrema salsugineum HOM05D001922 ORTHO05D001441 1.5e-11 74.3 129 33.3
Os01g0724700 Oryza sativa ssp. japonica HOM05D001922 ORTHO05D001441 1.5e-11 74.3 168 31.0
MELO3C011134.2 Cucumis melo HOM05D001922 ORTHO05D001441 1.9e-11 73.9 158 28.5
SMO367G0825 Selaginella moellendorffii HOM05D003256 ORTHO05D001441 1.9e-11 73.9 149 28.9
Zm00001eb154450 Zea mays HOM05D001922 ORTHO05D001441 1.9e-11 73.9 149 34.9
C03p86930 Brassica napus HOM05D001922 ORTHO05D001441 2.5e-11 73.6 156 30.8
SalBow4G1549 Salvia bowleyana HOM05D001922 ORTHO05D001441 2.5e-11 73.6 151 30.5
Eucgr.C02954 Eucalyptus grandis HOM05D001922 ORTHO05D001441 3.2e-11 73.2 153 32.0
Eucgr.C02972 Eucalyptus grandis HOM05D001922 ORTHO05D001441 3.2e-11 73.2 153 32.0
MBI01_g30452_MAGBIO Magnolia biondii HOM05D001922 ORTHO05D001441 3.2e-11 73.2 149 30.2
Zm00001eb298000 Zea mays HOM05D003256 ORTHO05D001441 3.2e-11 73.2 159 27.7
Manes.03G059750 Manihot esculenta HOM05D001922 ORTHO05D001441 4.2e-11 72.8 152 28.3
Atru.chr7.2069 Acer truncatum HOM05D001922 ORTHO05D001441 5.5e-11 72.4 156 28.8
CDE08G0954 Ceratophyllum demersum HOM05D001922 ORTHO05D001441 5.5e-11 72.4 133 27.1
Gohir.D13G193400 Gossypium hirsutum HOM05D001922 ORTHO05D001441 5.5e-11 72.4 167 28.7
Gorai.013G219400 Gossypium raimondii HOM05D001922 ORTHO05D001441 5.5e-11 72.4 167 28.7
MBI01_g15520_MAGBIO Magnolia biondii HOM05D001922 ORTHO05D001441 5.5e-11 72.4 154 30.5
VMungo0872G0001 Vigna mungo HOM05D001922 ORTHO05D001441 5.5e-11 72.4 165 31.5
Oeu003436.1 Olea europaea HOM05D003256 ORTHO05D001441 7.2e-11 72.0 155 30.3
Psat2g035280 Pisum sativum HOM05D003256 ORTHO05D001441 7.2e-11 72.0 161 24.8
Gorai.011G279500 Gossypium raimondii HOM05D003256 ORTHO05D001441 9.4e-11 71.6 183 26.8
PGSC0003DMG400004477 Solanum tuberosum HOM05D001922 ORTHO05D001441 1.2e-10 71.2 153 31.4
Aqoxy1G00709 Aquilegia oxysepala HOM05D003256 ORTHO05D001441 2.1e-10 70.5 158 27.8
DCAR_003125 Daucus carota HOM05D001922 ORTHO05D001441 2.1e-10 70.5 147 29.3
Eucgr.C03768 Eucalyptus grandis HOM05D001922 ORTHO05D001441 2.1e-10 70.5 141 32.6
Eucgr.C03772 Eucalyptus grandis HOM05D001922 ORTHO05D001441 2.1e-10 70.5 141 32.6
Lsat_1_v5_gn_8_12360 Lactuca sativa HOM05D003256 ORTHO05D001441 2.1e-10 70.5 168 28.0
A01p05410 Brassica napus HOM05D001922 ORTHO05D001441 2.7e-10 70.1 141 31.2
BraA01t00515Z Brassica rapa HOM05D001922 ORTHO05D001441 2.7e-10 70.1 141 31.2
Carub.0007s0762 Capsella rubella HOM05D001922 ORTHO05D001441 2.7e-10 70.1 124 29.8
FAN06G1448 Fragaria x ananassa HOM05D003256 ORTHO05D005659 2.7e-10 70.1 159 27.0
MD01G1146400 Malus domestica HOM05D003256 ORTHO05D001441 2.7e-10 70.1 157 27.4
Phvul.008G226800 Phaseolus vulgaris HOM05D003256 ORTHO05D001441 3.6e-10 69.7 164 26.2
BcaC09g52086 Brassica carinata HOM05D001922 ORTHO05D001441 4.7e-10 69.3 141 30.5
C01p06010 Brassica napus HOM05D001922 ORTHO05D001441 4.7e-10 69.3 141 30.5
BolC1t00593H Brassica oleracea HOM05D001922 ORTHO05D001441 4.7e-10 69.3 141 30.5
Medtr5g081780 Medicago truncatula HOM05D003256 ORTHO05D001441 4.7e-10 69.3 152 25.7
Peaxi162Scf00699g00004 Petunia axillaris HOM05D001922 ORTHO05D001441 4.7e-10 69.3 162 30.9
Sp7g30640 Schrenkiella parvula HOM05D001922 ORTHO05D001441 4.7e-10 69.3 141 31.2
FvH4_7g23970 Fragaria vesca HOM05D003256 ORTHO05D001441 6.1e-10 68.9 159 26.4
FAN03G3030 Fragaria x ananassa HOM05D003256 ORTHO05D001441 6.1e-10 68.9 160 26.2
FAN10G1586 Fragaria x ananassa HOM05D003256 ORTHO05D001441 6.1e-10 68.9 177 26.6
AL7G18850 Arabidopsis lyrata HOM05D001922 ORTHO05D001441 8.0e-10 68.6 157 28.0
Migut.F01435 Erythranthe guttata HOM05D003256 ORTHO05D001441 8.0e-10 68.6 173 28.3
Glyma.14G062400 Glycine max HOM05D003256 ORTHO05D001441 1.0e-09 68.2 152 25.7
Gohir.A10G229100 Gossypium hirsutum HOM05D003256 ORTHO05D001441 1.0e-09 68.2 163 27.0
Lj7P699T13 Lonicera japonica HOM05D001922 ORTHO05D001441 1.0e-09 68.2 137 27.7
AT4G32870 Arabidopsis thaliana HOM05D001922 ORTHO05D001441 1.4e-09 67.8 157 28.0
Mapoly0006s0042 Marchantia polymorpha HOM05D003256 ORTHO05D001441 1.4e-09 67.8 151 25.8
Prupe.2G245700 Prunus persica HOM05D003256 ORTHO05D005659 1.4e-09 67.8 166 25.3
Mapoly0021s0121 Marchantia polymorpha HOM05D001922 ORTHO05D001441 1.8e-09 67.4 140 32.1
Potri.008G063900 Populus trichocarpa HOM05D003256 ORTHO05D001441 1.8e-09 67.4 154 26.0
RcHm_v2.0_Chr1g0369311 Rosa chinensis HOM05D003256 ORTHO05D001441 1.8e-09 67.4 159 25.2
Migut.A00189 Erythranthe guttata HOM05D001922 ORTHO05D001441 2.3e-09 67.0 151 29.8
LjContig00357g0006095 Lotus japonicus HOM05D003256 ORTHO05D001441 2.3e-09 67.0 177 24.3
QL08p062603 Quercus lobata HOM05D003256 ORTHO05D001441 2.3e-09 67.0 160 25.0
Sopen08g020260 Solanum pennellii HOM05D001922 ORTHO05D001441 3.0e-09 66.6 175 26.3
SGA_v2.0_scaffold103G30019 Striga asiatica HOM05D001922 ORTHO05D001441 3.0e-09 66.6 138 29.0
CSS0030450 Camellia sinensis var. sinensis HOM05D003256 ORTHO05D001441 5.2e-09 65.9 166 24.1
GSVIVG01035607001 Vitis vinifera HOM05D001922 ORTHO05D001441 5.2e-09 65.9 159 25.2
Aa31sc874G10 Aethionema arabicum HOM05D001922 ORTHO05D001441 6.7e-09 65.5 128 28.9
CSS0012310 Camellia sinensis var. sinensis HOM05D003256 ORTHO05D001441 6.7e-09 65.5 166 24.1
Cfa013380 Carpinus fangiana HOM05D001922 ORTHO05D001441 6.7e-09 65.5 149 25.5
Eucgr.C02967 Eucalyptus grandis HOM05D001922 ORTHO05D001441 8.8e-09 65.1 154 31.8
TPR.G8048 Trifolium pratense HOM05D003256 ORTHO05D001441 8.8e-09 65.1 160 24.4
Nitab4.5_0000239g0050 Nicotiana tabacum HOM05D001922 ORTHO05D001441 1.2e-08 64.7 147 29.3
DCAR_011785 Daucus carota HOM05D003256 ORTHO05D005659 1.5e-08 64.3 144 26.4
Rhsim02G0176200 Rhododendron simsii HOM05D001922 ORTHO05D001441 1.5e-08 64.3 154 29.2
RhsimUnG0223000 Rhododendron simsii HOM05D001922 ORTHO05D001441 1.5e-08 64.3 154 29.2
Atru.chr7.2067 Acer truncatum HOM05D001922 ORTHO05D001441 2.0e-08 63.9 160 25.6
ATR0705G142 Amborella trichopoda HOM05D001922 ORTHO05D001441 2.0e-08 63.9 121 28.1
Cpa.g.sc19.220 Carica papaya HOM05D003256 ORTHO05D001441 2.0e-08 63.9 145 25.5
Haze_21904 Corylus avellana HOM05D001922 ORTHO05D001441 2.0e-08 63.9 146 26.7
Gohir.D13G193300 Gossypium hirsutum HOM05D001922 ORTHO05D001441 2.0e-08 63.9 140 27.9
VMungo1309G3110 Vigna mungo HOM05D001922 ORTHO05D001441 2.0e-08 63.9 163 25.2
Dinv34426 Davidia involucrata HOM05D003256 ORTHO05D001441 2.6e-08 63.5 157 24.2
Gorai.013G219300 Gossypium raimondii HOM05D001922 ORTHO05D001441 2.6e-08 63.5 140 27.9
AagrBONN_evm.TU.Sc2ySwM_228.237 Anthoceros agrestis HOM05D003256 ORTHO05D001441 3.3e-08 63.2 146 26.7
CARHR240870 Cardamine hirsuta HOM05D001922 ORTHO05D001441 3.3e-08 63.2 122 27.0
AUR62041968 Chenopodium quinoa HOM05D001922 ORTHO05D001441 3.3e-08 63.2 145 29.0
Ciclev10009701m.g Citrus clementina HOM05D001922 ORTHO05D001441 3.3e-08 63.2 154 26.0
Gohir.A13G186500 Gossypium hirsutum HOM05D001922 ORTHO05D001441 3.3e-08 63.2 140 27.9
TWI53G0608 Tripterygium wilfordii HOM05D003256 ORTHO05D001441 3.3e-08 63.2 160 25.6
CDE05G2145 Ceratophyllum demersum HOM05D001613 ORTHO05D001556 4.4e-08 62.8 152 25.0
AUR62009240 Chenopodium quinoa HOM05D001922 ORTHO05D001441 4.4e-08 62.8 169 28.4
Nitab4.5_0014592g0010 Nicotiana tabacum HOM05D001922 ORTHO05D001441 4.4e-08 62.8 149 28.9
PGSC0003DMG400004478 Solanum tuberosum HOM05D001922 ORTHO05D001441 4.4e-08 62.8 178 24.7
AagrBONN_evm.TU.Sc2ySwM_117.997 Anthoceros agrestis HOM05D003256 ORTHO05D001441 5.7e-08 62.4 151 27.8
Atru.chr7.2065 Acer truncatum HOM05D001922 ORTHO05D001441 9.7e-08 61.6 160 27.5
AagrBONN_evm.TU.Sc2ySwM_117.983 Anthoceros agrestis HOM05D003256 ORTHO05D001441 9.7e-08 61.6 149 28.2
CSS0016208 Camellia sinensis var. sinensis HOM05D001922 ORTHO05D001441 9.7e-08 61.6 145 24.8
Atru.chr7.2070 Acer truncatum HOM05D001922 ORTHO05D001441 1.7e-07 60.8 154 29.9
SEGI_30345 Sequoiadendron giganteum HOM05D001922 ORTHO05D001441 1.7e-07 60.8 155 24.5
Eucgr.C02948 Eucalyptus grandis HOM05D001922 ORTHO05D001441 2.2e-07 60.5 154 30.5
Aqoxy5G03655 Aquilegia oxysepala HOM05D001922 ORTHO05D001441 3.7e-07 59.7 163 27.6
Psat5g021320 Pisum sativum HOM05D001922 ORTHO05D001441 3.7e-07 59.7 136 30.1
QL12p041111 Quercus lobata HOM05D001922 ORTHO05D001441 3.7e-07 59.7 177 27.1
Aqoxy5G03654 Aquilegia oxysepala HOM05D001922 ORTHO05D001441 4.8e-07 59.3 162 29.0
SMO115G0051 Selaginella moellendorffii HOM05D001922 ORTHO05D001441 4.8e-07 59.3 142 28.9
Eucgr.C03767 Eucalyptus grandis HOM05D001922 ORTHO05D001441 8.2e-07 58.5 140 30.7
QL12p041137 Quercus lobata HOM05D001922 ORTHO05D001441 1.4e-06 57.8 167 23.4
Lalb_Chr08g0242971 Lupinus albus HOM05D001922 ORTHO05D001441 3.1e-06 56.6 151 25.8
Eucgr.C02953 Eucalyptus grandis HOM05D001922 ORTHO05D001441 4.1e-06 56.2 114 33.3
C07p59380 Brassica napus HOM05D001922 ORTHO05D001441 5.3e-06 55.8 92 33.7


User provided reference genes

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