Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_2160 Physcomitrium patens HOM05D000106 ORTHO05D002214 1.1e-77 293.1 139 100.0
Pp3c10_1880 Physcomitrium patens HOM05D000106 ORTHO05D001887 3.4e-18 95.5 139 41.0
Mapoly0041s0120 Marchantia polymorpha HOM05D000106 ORTHO05D001887 5.8e-10 68.2 122 34.4
SEGI_38367 Sequoiadendron giganteum HOM05D000106 ORTHO05D008911 7.6e-10 67.8 111 39.6
arahy.Tifrunner.gnm1.ann1.S19N9I Arachis hypogaea HOM05D000106 ORTHO05D003154 1.7e-09 66.6 119 34.5
Os09g0458300 Oryza sativa ssp. japonica HOM05D000106 ORTHO05D003154 1.7e-09 66.6 103 37.9
AagrBONN_evm.TU.Sc2ySwM_228.3303 Anthoceros agrestis HOM05D000106 ORTHO05D001887 2.2e-09 66.2 121 33.9
PGR004G1726 Punica granatum HOM05D000106 ORTHO05D001887 2.2e-09 66.2 136 33.8
Mapoly0041s0119 Marchantia polymorpha HOM05D000106 ORTHO05D001887 2.9e-09 65.9 122 33.6
SEGI_02000 Sequoiadendron giganteum HOM05D000106 ORTHO05D000160 3.8e-09 65.5 115 31.3
BcaB03g15170 Brassica carinata HOM05D000106 ORTHO05D001887 6.4e-09 64.7 123 30.1
A07p34260 Brassica napus HOM05D000106 ORTHO05D001887 8.4e-09 64.3 113 31.0
C06p42320 Brassica napus HOM05D000106 ORTHO05D001887 8.4e-09 64.3 119 29.4
Nitab4.5_0001142g0010 Nicotiana tabacum HOM05D000106 ORTHO05D001887 8.4e-09 64.3 104 34.6
SEGI_41059 Sequoiadendron giganteum HOM05D000106 ORTHO05D003154 1.1e-08 63.9 101 31.7
ATR0824G279 Amborella trichopoda HOM05D000106 ORTHO05D001887 1.4e-08 63.5 136 27.9
CDE02G0468 Ceratophyllum demersum HOM05D000106 ORTHO05D002214 1.4e-08 63.5 122 32.8
Os05g0393100 Oryza sativa ssp. japonica HOM05D000106 ORTHO05D003154 1.4e-08 63.5 124 35.5
SEGI_33991 Sequoiadendron giganteum HOM05D000106 ORTHO05D022920 1.4e-08 63.5 104 37.5
Sp5g22730 Schrenkiella parvula HOM05D000106 ORTHO05D001887 1.9e-08 63.2 119 29.4
BcaC08g46192 Brassica carinata HOM05D000106 ORTHO05D001887 2.4e-08 62.8 119 29.4
BcaC08g46193 Brassica carinata HOM05D000106 ORTHO05D001887 2.4e-08 62.8 119 28.6
ClCG05G026210 Citrullus lanatus HOM05D000106 ORTHO05D001887 2.4e-08 62.8 113 31.0
TAR636G2039 Trochodendron aralioides HOM05D000106 ORTHO05D001887 2.4e-08 62.8 123 32.5
arahy.Tifrunner.gnm1.ann1.0NLM07 Arachis hypogaea HOM05D000106 ORTHO05D003154 3.2e-08 62.4 119 32.8
CDE08G0230 Ceratophyllum demersum HOM05D000106 ORTHO05D002214 3.2e-08 62.4 121 35.5
SEGI_10536 Sequoiadendron giganteum HOM05D000106 ORTHO05D000160 3.2e-08 62.4 102 35.3
CsaV3_5G030630 Cucumis sativus L. HOM05D000106 ORTHO05D001887 4.2e-08 62.0 113 30.1
Duzib248G0858 Durio zibethinus HOM05D000106 ORTHO05D001887 4.2e-08 62.0 119 28.6
PSO339G0510 Papaver somniferum HOM05D000106 ORTHO05D001887 4.2e-08 62.0 122 32.0
PSO384G4763 Papaver somniferum HOM05D000106 ORTHO05D001887 4.2e-08 62.0 110 33.6
ATR0626G341 Amborella trichopoda HOM05D000106 ORTHO05D003154 5.4e-08 61.6 104 34.6
Carub.0002s1415 Capsella rubella HOM05D000106 ORTHO05D001887 5.4e-08 61.6 119 30.3
CAN.G608.23 Capsicum annuum HOM05D000106 ORTHO05D001887 5.4e-08 61.6 111 31.5
Atru.chr11.2211 Acer truncatum HOM05D000106 ORTHO05D001887 7.1e-08 61.2 103 32.0
AT1G67720 Arabidopsis thaliana HOM05D000106 ORTHO05D001887 7.1e-08 61.2 119 30.3
SEGI_20557 Sequoiadendron giganteum HOM05D000106 ORTHO05D000160 7.1e-08 61.2 121 28.9
Aqoxy2G03877 Aquilegia oxysepala HOM05D000106 ORTHO05D008911 9.3e-08 60.8 127 29.9
BraA07t31054Z Brassica rapa HOM05D000106 ORTHO05D001887 9.3e-08 60.8 113 30.1
SEGI_17263 Sequoiadendron giganteum HOM05D000106 ORTHO05D000160 1.2e-07 60.5 91 36.3
AL2G26420 Arabidopsis lyrata HOM05D000106 ORTHO05D001887 1.6e-07 60.1 124 29.8
Nn3g16587 Nelumbo nucifera HOM05D000106 ORTHO05D001887 1.6e-07 60.1 116 31.0
Psat7g124880 Pisum sativum HOM05D000106 ORTHO05D003154 1.6e-07 60.1 117 32.5
SEGI_27799 Sequoiadendron giganteum HOM05D000106 ORTHO05D003154 1.6e-07 60.1 80 37.5
Solyc09g007280.4 Solanum lycopersicum HOM05D000106 ORTHO05D001887 1.6e-07 60.1 109 32.1
Sopen09g002170 Solanum pennellii HOM05D000106 ORTHO05D001887 1.6e-07 60.1 109 32.1
PGSC0003DMG400001732 Solanum tuberosum HOM05D000106 ORTHO05D001887 1.6e-07 60.1 109 32.1
AagrBONN_evm.TU.Sc2ySwM_117.1328 Anthoceros agrestis HOM05D000106 ORTHO05D001887 2.1e-07 59.7 110 36.4
CARHR060310 Cardamine hirsuta HOM05D000106 ORTHO05D001887 2.1e-07 59.7 108 29.6
CDE02G4645 Ceratophyllum demersum HOM05D000106 ORTHO05D002214 2.1e-07 59.7 122 29.5
Dinv14775 Davidia involucrata HOM05D000106 ORTHO05D001887 2.1e-07 59.7 101 28.7
Thhalv10018088m.g Eutrema salsugineum HOM05D000106 ORTHO05D001887 2.1e-07 59.7 101 29.7
Nn5g30161 Nelumbo nucifera HOM05D000106 ORTHO05D002214 2.1e-07 59.7 119 32.8
ATR1145G060 Amborella trichopoda HOM05D000106 ORTHO05D008911 2.7e-07 59.3 113 33.6
BolC6t39197H Brassica oleracea HOM05D000106 ORTHO05D001887 2.7e-07 59.3 119 27.7
DCAR_024071 Daucus carota HOM05D000106 ORTHO05D001887 2.7e-07 59.3 100 29.0
Gohir.D02G154300 Gossypium hirsutum HOM05D000106 ORTHO05D001887 2.7e-07 59.3 111 32.4
Sed0027433 Sechium edule HOM05D000106 ORTHO05D008911 2.7e-07 59.3 124 31.5
VMungo1080G0740 Vigna mungo HOM05D000106 ORTHO05D000160 2.7e-07 59.3 121 33.1
Glyma.02G132800 Glycine max HOM05D000106 ORTHO05D003154 3.5e-07 58.9 112 32.1
Lalb_Chr05g0219141 Lupinus albus HOM05D000106 ORTHO05D003154 3.5e-07 58.9 105 33.3
TWI36G0519 Tripterygium wilfordii HOM05D000106 ORTHO05D001887 3.5e-07 58.9 120 27.5
AagrBONN_evm.TU.Sc2ySwM_340.255 Anthoceros agrestis HOM05D000106 ORTHO05D009366 4.6e-07 58.5 100 35.0
EL10As2g23235 Beta vulgaris HOM05D000106 ORTHO05D001887 4.6e-07 58.5 120 30.0
COL.COLO4_32660 Corchorus olitorius HOM05D007022 ORTHO05D003154 4.6e-07 58.5 117 32.5
Gohir.A03G130600 Gossypium hirsutum HOM05D000106 ORTHO05D001887 4.6e-07 58.5 111 32.4
Hma1.2p1_0079F.1_g041460 Hydrangea macrophylla HOM05D000106 ORTHO05D001887 4.6e-07 58.5 122 32.0
Lj6g0001898 Lotus japonicus HOM05D000106 ORTHO05D001887 4.6e-07 58.5 102 31.4
Mapoly0005s0099 Marchantia polymorpha HOM05D000106 ORTHO05D017072 4.6e-07 58.5 128 32.8
Peaxi162Scf00005g04914 Petunia axillaris HOM05D000106 ORTHO05D001887 4.6e-07 58.5 100 34.0
Sed0015363 Sechium edule HOM05D000106 ORTHO05D000160 4.6e-07 58.5 120 27.5
SEGI_16738 Sequoiadendron giganteum HOM05D000106 ORTHO05D001887 4.6e-07 58.5 112 27.7
Sc18g0004070 Simmondsia chinensis HOM05D000106 ORTHO05D003154 4.6e-07 58.5 133 33.1
GSVIVG01031750001 Vitis vinifera HOM05D000106 ORTHO05D003154 4.6e-07 58.5 89 34.8
Nn3g19967 Nelumbo nucifera HOM05D000106 ORTHO05D008911 6.0e-07 58.2 106 34.0
SHI05360 Sapria himalayana HOM05D000106 ORTHO05D003154 6.0e-07 58.2 89 37.1
Sed0005961 Sechium edule HOM05D000106 ORTHO05D001887 6.0e-07 58.2 121 29.8
SEGI_29790 Sequoiadendron giganteum HOM05D000106 ORTHO05D008911 6.0e-07 58.2 122 32.0
GSVIVG01025057001 Vitis vinifera HOM05D000106 ORTHO05D002214 6.0e-07 58.2 99 36.4
FAN20G1300 Fragaria x ananassa HOM05D000106 ORTHO05D003154 7.9e-07 57.8 106 34.0
FAN27G0907 Fragaria x ananassa HOM05D000106 ORTHO05D003154 7.9e-07 57.8 106 34.0
Gorai.005G173400 Gossypium raimondii HOM05D000106 ORTHO05D001887 7.9e-07 57.8 111 31.5
Manes.12G017900 Manihot esculenta HOM05D000106 ORTHO05D001887 7.9e-07 57.8 111 28.8
Nn5g30163 Nelumbo nucifera HOM05D000106 ORTHO05D002214 7.9e-07 57.8 113 33.6
DCAR_022027 Daucus carota HOM05D000106 ORTHO05D003154 1.0e-06 57.4 89 33.7
Duzib235G1538 Durio zibethinus HOM05D000106 ORTHO05D000160 1.0e-06 57.4 116 36.2
FAN15G1680 Fragaria x ananassa HOM05D000106 ORTHO05D003154 1.0e-06 57.4 124 33.1
Nn5g30162 Nelumbo nucifera HOM05D000106 ORTHO05D002214 1.0e-06 57.4 121 33.9
Potri.009G102300 Populus trichocarpa HOM05D000106 ORTHO05D003154 1.0e-06 57.4 93 33.3
PGR083G1059 Punica granatum HOM05D000106 ORTHO05D008911 1.0e-06 57.4 105 31.4
QL09p054453 Quercus lobata HOM05D000106 ORTHO05D008911 1.0e-06 57.4 128 30.5
Sc04g0009860 Simmondsia chinensis HOM05D000106 ORTHO05D001887 1.0e-06 57.4 126 28.6
TAR626G1631 Trochodendron aralioides HOM05D000106 ORTHO05D001887 1.0e-06 57.4 105 33.3
Aa31LG4G12150 Aethionema arabicum HOM05D000106 ORTHO05D001887 1.3e-06 57.0 121 28.1
AagrBONN_evm.TU.Sc2ySwM_117.2917 Anthoceros agrestis HOM05D000106 ORTHO05D001887 1.3e-06 57.0 98 37.8
arahy.Tifrunner.gnm1.ann1.HFGX37 Arachis hypogaea HOM05D000106 ORTHO05D002214 1.3e-06 57.0 113 35.4
arahy.Tifrunner.gnm1.ann1.YTSD4J Arachis hypogaea HOM05D000106 ORTHO05D002214 1.3e-06 57.0 113 35.4
AUR62016611 Chenopodium quinoa HOM05D000106 ORTHO05D003154 1.3e-06 57.0 89 34.8
MELO3C018446.2 Cucumis melo HOM05D000106 ORTHO05D003154 1.3e-06 57.0 101 34.7
FvH4_2g06120 Fragaria vesca HOM05D000106 ORTHO05D003154 1.3e-06 57.0 106 34.0
FAN24G0641 Fragaria x ananassa HOM05D000106 ORTHO05D003154 1.3e-06 57.0 106 34.0
Mapoly0096s0042 Marchantia polymorpha HOM05D000106 ORTHO05D017072 1.3e-06 57.0 104 36.5
Mapoly0228s0004 Marchantia polymorpha HOM05D000106 ORTHO05D000160 1.3e-06 57.0 114 33.3
Medtr4g086250 Medicago truncatula HOM05D000106 ORTHO05D003154 1.3e-06 57.0 117 30.8
Nitab4.5_0006152g0020 Nicotiana tabacum HOM05D000106 ORTHO05D001887 1.3e-06 57.0 95 35.8
Oeu012663.1 Olea europaea HOM05D000106 ORTHO05D001887 1.3e-06 57.0 124 29.8
Sabra09G0078300 Salix brachista HOM05D000106 ORTHO05D003154 1.3e-06 57.0 91 34.1
Aqoxy6G00061 Aquilegia oxysepala HOM05D000106 ORTHO05D003154 1.7e-06 56.6 117 33.3
CANSAT01G2542 Cannabis sativa HOM05D000106 ORTHO05D001887 1.7e-06 56.6 102 30.4
Migut.B00345 Erythranthe guttata HOM05D000106 ORTHO05D003154 1.7e-06 56.6 84 34.5
Mapoly0005s0100 Marchantia polymorpha HOM05D000106 ORTHO05D017072 1.7e-06 56.6 128 32.0
Nitab4.5_0000045g0300 Nicotiana tabacum HOM05D000106 ORTHO05D008911 1.7e-06 56.6 105 31.4
PSO063G2694 Papaver somniferum HOM05D000106 ORTHO05D001887 1.7e-06 56.6 123 27.6
Peaxi162Scf00107g02028 Petunia axillaris HOM05D000106 ORTHO05D008911 1.7e-06 56.6 121 30.6
Sed0001990 Sechium edule HOM05D000106 ORTHO05D003154 1.7e-06 56.6 107 32.7
Sc05g0002170 Simmondsia chinensis HOM05D000106 ORTHO05D008911 1.7e-06 56.6 105 32.4
Thecc.02G269800 Theobroma cacao HOM05D000106 ORTHO05D001887 1.7e-06 56.6 120 28.3
TAR371G1272 Trochodendron aralioides HOM05D000106 ORTHO05D001887 1.7e-06 56.6 104 29.8
CSS0007106 Camellia sinensis var. sinensis HOM05D000106 ORTHO05D008911 2.3e-06 56.2 129 30.2
MELO3C013021.2 Cucumis melo HOM05D000106 ORTHO05D000160 2.3e-06 56.2 107 31.8
CsaV3_7G008640 Cucumis sativus L. HOM05D000106 ORTHO05D003154 2.3e-06 56.2 118 32.2
DCAR_026489 Daucus carota HOM05D000106 ORTHO05D001887 2.3e-06 56.2 100 29.0
Nitab4.5_0003758g0010 Nicotiana tabacum HOM05D000106 ORTHO05D008911 2.3e-06 56.2 105 31.4
Prupe.1G238400 Prunus persica HOM05D000106 ORTHO05D001887 2.3e-06 56.2 101 28.7
AUR62005548 Chenopodium quinoa HOM05D000106 ORTHO05D001887 3.0e-06 55.8 124 25.8
Duzib235G0204 Durio zibethinus HOM05D000106 ORTHO05D000160 3.0e-06 55.8 116 36.2
MD05G1080300 Malus domestica HOM05D000106 ORTHO05D003154 3.0e-06 55.8 115 33.0
Nn1g02240 Nelumbo nucifera HOM05D000106 ORTHO05D003154 3.0e-06 55.8 130 35.4
Os03g0184400 Oryza sativa ssp. japonica HOM05D000106 ORTHO05D003154 3.0e-06 55.8 90 36.7
Hund25426 Selenicereus undatus HOM05D000106 ORTHO05D001887 3.0e-06 55.8 101 29.7
Ah.02g130470 Amaranthus hybridus HOM05D000106 ORTHO05D001887 3.9e-06 55.5 99 29.3
Lalb_Chr01g0022311 Lupinus albus HOM05D000106 ORTHO05D008911 3.9e-06 55.5 124 30.6
PSO782G5638 Papaver somniferum HOM05D000106 ORTHO05D001887 3.9e-06 55.5 123 27.6
Pp3c15_1540 Physcomitrium patens HOM05D000106 ORTHO05D001887 3.9e-06 55.5 56 42.9
SEGI_00403 Sequoiadendron giganteum HOM05D000106 ORTHO05D000160 3.9e-06 55.5 84 34.5
SEGI_21701 Sequoiadendron giganteum HOM05D000106 ORTHO05D000160 3.9e-06 55.5 133 29.3
PGSC0003DMG401017656 Solanum tuberosum HOM05D000106 ORTHO05D008911 3.9e-06 55.5 107 31.8
Gohir.A03G189700 Gossypium hirsutum HOM05D000106 ORTHO05D003154 5.1e-06 55.1 91 33.0
MBI14_g38027_MAGBIO Magnolia biondii HOM05D000106 ORTHO05D002214 5.1e-06 55.1 107 37.4
MD16G1108100 Malus domestica HOM05D000106 ORTHO05D001887 5.1e-06 55.1 124 25.0
Mapoly0044s0045 Marchantia polymorpha HOM05D000106 ORTHO05D009366 5.1e-06 55.1 105 34.3
QL05p018709 Quercus lobata HOM05D000106 ORTHO05D000160 5.1e-06 55.1 114 33.3
THA.LOC104825585 Tarenaya hassleriana HOM05D000106 ORTHO05D001887 5.1e-06 55.1 109 27.5
VMungo0251G2351 Vigna mungo HOM05D000106 ORTHO05D003154 5.1e-06 55.1 119 31.9
EL10Ac9g21839 Beta vulgaris HOM05D000106 ORTHO05D003154 6.6e-06 54.7 90 34.4
Ca_18681_v3 Cicer arietinum L. HOM05D000106 ORTHO05D003154 6.6e-06 54.7 117 29.9
Cc11_g16310 Coffea canephora HOM05D000106 ORTHO05D001887 6.6e-06 54.7 101 30.7
Glyma.07G212200 Glycine max HOM05D000106 ORTHO05D003154 6.6e-06 54.7 112 31.2
Gohir.A05G099000 Gossypium hirsutum HOM05D000106 ORTHO05D002214 6.6e-06 54.7 104 34.6
HanXRQChr14g0446361 Helianthus annuus HOM05D000106 ORTHO05D002214 6.6e-06 54.7 100 34.0
Nn3g20712 Nelumbo nucifera HOM05D000106 ORTHO05D003154 6.6e-06 54.7 117 29.9
Solyc09g060110.4 Solanum lycopersicum HOM05D000106 ORTHO05D008911 6.6e-06 54.7 107 31.8
Sopen09g023740 Solanum pennellii HOM05D000106 ORTHO05D008911 6.6e-06 54.7 107 31.8
Thecc.06G103200 Theobroma cacao HOM05D000106 ORTHO05D000160 6.6e-06 54.7 104 34.6
Glyma.13G352900 Glycine max HOM05D000106 ORTHO05D000160 8.7e-06 54.3 101 31.7
Lalb_Chr16g0384711 Lupinus albus HOM05D000106 ORTHO05D003154 8.7e-06 54.3 115 28.7
PSO541G1107 Papaver somniferum HOM05D000106 ORTHO05D003154 8.7e-06 54.3 90 36.7
PSO675G5888 Papaver somniferum HOM05D000106 ORTHO05D003154 8.7e-06 54.3 90 36.7


User provided reference genes

Program Settings