Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_18980 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 2283.4 1169 100.0
Pp3c14_16610 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1864.7 1170 79.8
Pp3c2_2820 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1848.6 1171 80.0
Mapoly0078s0040 Marchantia polymorpha HOM05D005231 ORTHO05D006387 0.0e+00 1565.4 1178 67.8
SMO143G0109 Selaginella moellendorffii HOM05D005231 ORTHO05D006387 0.0e+00 1512.3 1172 66.6
SEGI_09869 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 0.0e+00 1459.5 1174 64.3
Aqoxy5G03496 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 0.0e+00 1418.3 1192 62.3
Dinv25680 Davidia involucrata HOM05D005231 ORTHO05D006387 0.0e+00 1415.6 1179 62.8
Nn4g22395 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1412.5 1113 64.3
TAR371G0773 Trochodendron aralioides HOM05D005231 ORTHO05D006387 0.0e+00 1412.5 1186 61.9
Cc07_g00560 Coffea canephora HOM05D005231 ORTHO05D006387 0.0e+00 1399.0 1177 61.4
Lj7A607T31 Lonicera japonica HOM05D005231 ORTHO05D006387 0.0e+00 1398.6 1181 62.1
Hma1.2p1_0571F.1_g180760 Hydrangea macrophylla HOM05D005231 ORTHO05D006387 0.0e+00 1395.6 1172 62.1
Nn2g10551 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1392.1 1182 61.2
Prupe.5G183000 Prunus persica HOM05D005231 ORTHO05D006387 0.0e+00 1391.3 1188 61.3
Haze_14831 Corylus avellana HOM05D005231 ORTHO05D006387 0.0e+00 1390.9 1184 61.1
Sopen11g027360 Solanum pennellii HOM05D005231 ORTHO05D006387 0.0e+00 1389.8 1177 61.6
CAN.G745.7 Capsicum annuum HOM05D005231 ORTHO05D006387 0.0e+00 1387.9 1176 61.5
Solyc11g068640.2 Solanum lycopersicum HOM05D005231 ORTHO05D006387 0.0e+00 1387.9 1178 61.6
Actinidia30894 Actinidia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1387.1 1178 61.4
Lalb_Chr14g0363091 Lupinus albus HOM05D005231 ORTHO05D006387 0.0e+00 1387.1 1173 61.6
PSO782G5010 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1387.1 1200 59.7
Nitab4.5_0006008g0040 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1386.3 1176 61.1
Migut.K01445 Erythranthe guttata HOM05D005231 ORTHO05D006387 0.0e+00 1385.9 1180 61.2
CANSAT64G0673 Cannabis sativa HOM05D005231 ORTHO05D006387 0.0e+00 1385.2 1185 61.3
Cfa007256 Carpinus fangiana HOM05D005231 ORTHO05D006387 0.0e+00 1385.2 1183 60.9
Ca_26723_v3 Cicer arietinum L. HOM05D005231 ORTHO05D006387 0.0e+00 1385.2 1169 60.6
Nitab4.5_0000731g0120 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1384.8 1177 61.0
PSO063G5961 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1384.8 1194 60.6
ECA238G4317 Erigeron canadensis HOM05D005231 ORTHO05D006387 0.0e+00 1382.5 1177 60.1
MD06G1184100 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1382.5 1185 61.0
Lj1g0000655 Lotus japonicus HOM05D005231 ORTHO05D006387 0.0e+00 1381.7 1172 61.3
CiPaw.03G052100 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1381.3 1186 61.2
CiPaw.04G034400 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1381.3 1185 60.3
ClCG05G007180 Citrullus lanatus HOM05D005231 ORTHO05D006387 0.0e+00 1380.9 1177 61.4
RcHm_v2.0_Chr7g0180111 Rosa chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1378.6 1182 60.7
Eucgr.I01665 Eucalyptus grandis HOM05D005231 ORTHO05D006387 0.0e+00 1372.8 1184 60.7
Phvul.001G096100 Phaseolus vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1372.5 1172 60.5
Peaxi162Scf00224g00118 Petunia axillaris HOM05D005231 ORTHO05D006387 0.0e+00 1372.1 1223 59.2
TPR.G38280 Trifolium pratense HOM05D005231 ORTHO05D006387 0.0e+00 1372.1 1171 60.8
VMungo1215G0650 Vigna mungo HOM05D005231 ORTHO05D006387 0.0e+00 1372.1 1171 60.9
Ciclev10014086m.g Citrus clementina HOM05D005231 ORTHO05D006387 0.0e+00 1371.7 1176 60.4
Manes.17G106200 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1371.3 1172 59.6
QL02p072461 Quercus lobata HOM05D005231 ORTHO05D006387 0.0e+00 1370.5 1177 60.7
Gohir.D09G035000 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1369.4 1183 59.8
HanXRQChr14g0450911 Helianthus annuus HOM05D005231 ORTHO05D006387 0.0e+00 1369.0 1172 60.2
SalBow1G7136 Salvia bowleyana HOM05D005231 ORTHO05D006387 0.0e+00 1369.0 1111 61.7
MSTRG.3095 Avicennia marina HOM05D005231 ORTHO05D006387 0.0e+00 1368.2 1182 59.8
CSS0002510 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 0.0e+00 1368.2 1177 61.6
Lsat_1_v5_gn_2_93920 Lactuca sativa HOM05D005231 ORTHO05D006387 0.0e+00 1367.8 1178 60.6
Glyma.19G086600 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1367.4 1174 60.9
Gorai.006G039900 Gossypium raimondii HOM05D005231 ORTHO05D006387 0.0e+00 1367.4 1181 59.6
FAN08G2159 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1366.7 1180 60.1
TWI12G0663 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1366.7 1185 60.0
Hund15390 Selenicereus undatus HOM05D005231 ORTHO05D006387 0.0e+00 1365.9 1179 59.8
Sed0020589 Sechium edule HOM05D005231 ORTHO05D006387 0.0e+00 1365.5 1177 60.6
TWI36G1540 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1364.7 1185 59.9
Psat3g170000 Pisum sativum HOM05D005231 ORTHO05D006387 0.0e+00 1364.4 1171 60.2
Atru.chr6.2511 Acer truncatum HOM05D005231 ORTHO05D006387 0.0e+00 1364.0 1177 60.3
ATR0693G284 Amborella trichopoda HOM05D005231 ORTHO05D006387 0.0e+00 1363.6 1173 60.6
arahy.Tifrunner.gnm1.ann1.L2Q6WP Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1362.4 1172 61.0
COL.COLO4_08767 Corchorus olitorius HOM05D005231 ORTHO05D006387 0.0e+00 1361.7 1177 60.0
Rhsim08G0045200 Rhododendron simsii HOM05D005231 ORTHO05D006387 0.0e+00 1361.3 1221 59.6
Sc03g0006820 Simmondsia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1360.9 1190 60.1
FAN04G1242 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1360.5 1182 59.7
Gohir.A09G034100 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1359.4 1181 59.3
Thecc.04G029800 Theobroma cacao HOM05D005231 ORTHO05D006387 0.0e+00 1359.0 1175 60.4
FAN18G1846 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1357.8 1182 59.5
FvH4_5g15940 Fragaria vesca HOM05D005231 ORTHO05D006387 0.0e+00 1357.0 1182 59.4
Potri.001G334300 Populus trichocarpa HOM05D005231 ORTHO05D006387 0.0e+00 1357.0 1184 60.5
arahy.Tifrunner.gnm1.ann1.M0JNNK Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1356.7 1183 60.4
SGA_v2.0_scaffold47G17578 Striga asiatica HOM05D005231 ORTHO05D006387 0.0e+00 1356.3 1110 61.4
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 0.0e+00 1355.1 1219 59.2
Duzib147G1087 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1354.0 1177 59.9
Glyma.16G060500 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1354.0 1177 60.4
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1353.2 1187 60.3
Duzib264G1000 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1353.2 1179 60.1
GSVIVG01001825001 Vitis vinifera HOM05D005231 ORTHO05D006387 0.0e+00 1350.1 1173 60.6
Aa31LG5G10910 Aethionema arabicum HOM05D005231 ORTHO05D006387 0.0e+00 1349.7 1183 59.4
Sabra16G0215400 Salix brachista HOM05D005231 ORTHO05D006387 0.0e+00 1349.3 1181 59.9
A02p30380 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1347.4 1180 59.4
PGR142G3743 Punica granatum HOM05D005231 ORTHO05D006387 0.0e+00 1347.0 1215 57.7
BraA02t08053Z Brassica rapa HOM05D005231 ORTHO05D006387 0.0e+00 1346.6 1180 59.4
C02p47900 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1346.3 1184 59.3
BolC2t10823H Brassica oleracea HOM05D005231 ORTHO05D006387 0.0e+00 1346.3 1184 59.3
Sp3g00280 Schrenkiella parvula HOM05D005231 ORTHO05D006387 0.0e+00 1346.3 1182 59.3
AL3G10350 Arabidopsis lyrata HOM05D005231 ORTHO05D006387 0.0e+00 1344.7 1190 58.9
Thhalv10019930m.g Eutrema salsugineum HOM05D005231 ORTHO05D006387 0.0e+00 1344.7 1186 59.1
AT3G01780 Arabidopsis thaliana HOM05D005231 ORTHO05D006387 0.0e+00 1343.9 1190 58.8
Carub.0003s0028 Capsella rubella HOM05D005231 ORTHO05D006387 0.0e+00 1342.0 1182 59.0
BcaC03g16893 Brassica carinata HOM05D005231 ORTHO05D006387 0.0e+00 1340.9 1116 60.7
unitig_21.g20479 Utricularia gibba HOM05D005231 ORTHO05D006387 0.0e+00 1338.6 1171 58.7
Ah.01g004700 Amaranthus hybridus HOM05D005231 ORTHO05D006387 0.0e+00 1334.3 1183 59.6
CARHR075150 Cardamine hirsuta HOM05D005231 ORTHO05D006387 0.0e+00 1332.0 1201 58.2
THA.LOC104822412 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 0.0e+00 1327.0 1185 58.7
EL10Ac6g14067 Beta vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1311.6 1190 58.7
SHI03892 Sapria himalayana HOM05D005231 ORTHO05D006387 0.0e+00 1299.3 1181 57.5
AUR62014230 Chenopodium quinoa HOM05D005231 ORTHO05D006387 0.0e+00 1271.1 1082 61.0
vmacro18325 Vaccinium macrocarpon HOM05D005231 ORTHO05D006387 0.0e+00 1268.1 1340 53.5
FAN13G1708 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1249.2 1203 56.1
Os02g0793100 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1236.9 1180 55.3
Zm00001eb201030 Zea mays HOM05D005231 ORTHO05D006387 0.0e+00 1233.4 1178 55.8
DCAR_021762 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1165.2 1007 61.7
AagrBONN_evm.TU.Sc2ySwM_344.3213 Anthoceros agrestis HOM05D005231 ORTHO05D006387 0.0e+00 1157.1 935 63.4
Cpa.g.sc130.10 Carica papaya HOM05D005231 ORTHO05D006387 0.0e+00 1134.4 1174 53.7
CBR_g21747 Chara braunii HOM05D005231 ORTHO05D006387 0.0e+00 1110.9 1200 49.2
Medtr7g031450 Medicago truncatula HOM05D005231 ORTHO05D006387 0.0e+00 1086.2 948 60.7
MD14G1190000 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1083.2 866 63.5
MBI11_g15863_MAGBIO Magnolia biondii HOM05D005231 ORTHO05D006387 5.9e-305 1051.2 819 64.5
Manes.15G157900 Manihot esculenta HOM05D005231 ORTHO05D006387 7.9e-302 1040.8 857 61.6
HPP92_011387 Vanilla planifolia HOM05D005231 ORTHO05D006387 6.3e-291 1004.6 815 62.2
Os11g0175900 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 4.0e-261 905.6 803 59.7
Oeu050426.1 Olea europaea HOM05D005231 ORTHO05D006387 2.4e-250 869.8 714 61.6
CDE07G1517 Ceratophyllum demersum HOM05D005231 ORTHO05D006387 3.9e-216 756.1 651 61.0
CSS0033455 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 3.6e-214 749.6 601 63.4
AUR62014240 Chenopodium quinoa HOM05D005231 ORTHO05D006387 2.4e-213 746.9 764 54.2
AUR62038506 Chenopodium quinoa HOM05D005231 ORTHO05D006387 3.7e-206 723.0 617 61.6
CsaV3_3G015930 Cucumis sativus L. HOM05D005231 ORTHO05D006387 9.3e-202 708.4 567 62.8
BcaB01g00417 Brassica carinata HOM05D005231 ORTHO05D006387 5.3e-189 666.0 650 54.9
CsaV3_3G015940 Cucumis sativus L. HOM05D005231 ORTHO05D006387 3.9e-184 649.8 584 59.4
Zm00001eb091570 Zea mays HOM05D005231 ORTHO05D006387 1.8e-176 624.4 495 63.4
AUR62038505 Chenopodium quinoa HOM05D005231 ORTHO05D006387 4.8e-174 616.3 522 60.2
Oeu050427.1 Olea europaea HOM05D005231 ORTHO05D006387 4.7e-137 493.4 470 56.8
Dinv33367 Davidia involucrata HOM05D005231 ORTHO05D006387 1.1e-125 455.7 396 57.6
Lj1g0013476 Lotus japonicus HOM05D005231 ORTHO05D006387 1.4e-104 385.6 360 54.7
Aqoxy5G03474 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 1.1e-88 332.8 351 55.8
Zm00001eb091560 Zea mays HOM05D005231 ORTHO05D006387 3.1e-88 331.3 377 46.4
Dinv33368 Davidia involucrata HOM05D005231 ORTHO05D006387 4.1e-72 277.7 194 71.6
Zm00001eb091580 Zea mays HOM05D005231 ORTHO05D006387 2.0e-66 258.8 272 52.2
THA.LOC104823986 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 9.1e-40 170.2 166 54.8
Aqoxy4G01030 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 2.2e-33 149.1 128 59.4
Oeu058765.1 Olea europaea HOM05D005231 ORTHO05D006387 6.3e-33 147.5 142 54.2
BraA03t12406Z Brassica rapa HOM05D002210 ORTHO05D002304 2.3e-27 129.0 72 77.8
C04p29360 Brassica napus HOM05D005231 ORTHO05D006387 4.9e-25 121.3 103 59.2
Dinv33369 Davidia involucrata HOM05D005231 ORTHO05D006387 8.3e-25 120.6 87 64.4
A01p22920 Brassica napus HOM05D005231 ORTHO05D006387 2.4e-24 119.0 109 56.9
Lj1P845T37 Lonicera japonica HOM05D005231 ORTHO05D006387 1.7e-22 112.8 94 59.6
SEGI_00772 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 6.6e-14 84.3 190 33.2
SEGI_37350 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 4.3e-13 81.6 81 49.4
CDE04G2058 Ceratophyllum demersum HOM05D000772 ORTHO05D003239 8.9e-11 73.9 120 36.7
TAR626G1446 Trochodendron aralioides HOM05D000199 ORTHO05D015700 8.9e-11 73.9 50 66.0
TAR365G0935 Trochodendron aralioides HOM05D000199 ORTHO05D015700 4.4e-10 71.6 50 64.0
TAR627G1114 Trochodendron aralioides HOM05D005231 ORTHO05D006387 1.3e-09 70.1 50 64.0


User provided reference genes

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