Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_18670 Physcomitrium patens HOM05D004481 ORTHO05D005350 4.1e-181 637.9 313 100.0
SEGI_10030 Sequoiadendron giganteum HOM05D004481 ORTHO05D005350 1.1e-93 347.4 283 56.5
Mapoly0064s0080 Marchantia polymorpha HOM05D004481 ORTHO05D005350 1.2e-90 337.4 300 54.0
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 8.3e-89 331.3 285 55.4
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 3.1e-88 329.3 284 56.3
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 3.1e-88 329.3 283 57.2
Manes.07G066500 Manihot esculenta HOM05D004481 ORTHO05D005350 5.9e-87 325.1 285 55.8
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 7.8e-87 324.7 285 55.4
arahy.Tifrunner.gnm1.ann1.5RC8JY Arachis hypogaea HOM05D004481 ORTHO05D005350 1.3e-86 323.9 283 54.8
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 2.3e-86 323.2 281 56.6
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 3.8e-86 322.4 287 55.1
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 3.8e-86 322.4 285 55.4
Potri.009G093200 Populus trichocarpa HOM05D004481 ORTHO05D005350 5.0e-86 322.0 285 55.8
Eucgr.I01088 Eucalyptus grandis HOM05D004481 ORTHO05D005350 6.6e-86 321.6 282 53.9
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 6.6e-86 321.6 287 54.7
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 6.6e-86 321.6 287 54.7
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 1.5e-85 320.5 272 57.7
Oeu037260.1 Olea europaea HOM05D004481 ORTHO05D005350 1.9e-85 320.1 283 55.1
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 1.9e-85 320.1 285 55.4
Thecc.02G111500 Theobroma cacao HOM05D004481 ORTHO05D005350 2.5e-85 319.7 285 54.4
Ciclev10028970m.g Citrus clementina HOM05D004481 ORTHO05D005350 3.3e-85 319.3 285 54.7
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 3.3e-85 319.3 285 55.8
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 4.3e-85 318.9 285 53.7
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 4.3e-85 318.9 278 55.4
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 4.3e-85 318.9 282 54.6
Lj5g0012751 Lotus japonicus HOM05D004481 ORTHO05D005350 5.6e-85 318.5 280 55.4
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 5.6e-85 318.5 285 55.4
SMO361G0327 Selaginella moellendorffii HOM05D004481 ORTHO05D005350 7.3e-85 318.2 286 55.6
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 9.5e-85 317.8 282 56.4
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 1.2e-84 317.4 284 54.2
FAN27G3202 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.2e-84 317.4 285 54.0
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 1.2e-84 317.4 275 56.0
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 1.2e-84 317.4 285 54.0
TPR.G27083 Trifolium pratense HOM05D004481 ORTHO05D005350 1.6e-84 317.0 281 54.4
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 2.1e-84 316.6 285 53.7
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 2.8e-84 316.2 284 53.9
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 3.6e-84 315.8 281 55.5
AUR62010332 Chenopodium quinoa HOM05D004481 ORTHO05D005350 3.6e-84 315.8 283 55.8
Glyma.20G130700 Glycine max HOM05D004481 ORTHO05D005350 3.6e-84 315.8 282 53.9
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 4.7e-84 315.5 280 55.0
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 6.1e-84 315.1 285 53.3
Actinidia27975 Actinidia chinensis HOM05D004481 ORTHO05D005350 8.0e-84 314.7 285 54.0
Aqoxy5G01130 Aquilegia oxysepala HOM05D004481 ORTHO05D005350 8.0e-84 314.7 288 53.8
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 1.0e-83 314.3 289 54.0
CANSAT25G2190 Cannabis sativa HOM05D004481 ORTHO05D005350 1.4e-83 313.9 283 54.4
Phvul.007G041700 Phaseolus vulgaris HOM05D004481 ORTHO05D005350 1.4e-83 313.9 277 54.2
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 1.4e-83 313.9 281 53.7
VMungo0720G1503 Vigna mungo HOM05D004481 ORTHO05D005350 1.4e-83 313.9 281 53.4
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 2.3e-83 313.2 285 53.0
CANSAT25G3441 Cannabis sativa HOM05D004481 ORTHO05D005350 3.1e-83 312.8 283 54.1
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 3.1e-83 312.8 280 53.9
Glyma.10G260500 Glycine max HOM05D004481 ORTHO05D005350 4.0e-83 312.4 283 52.7
Medtr1g107045 Medicago truncatula HOM05D004481 ORTHO05D005350 5.2e-83 312.0 281 54.8
Psat6g216600 Pisum sativum HOM05D004481 ORTHO05D005350 8.9e-83 311.2 285 54.0
PSO210G1902 Papaver somniferum HOM05D004481 ORTHO05D005350 1.2e-82 310.8 288 53.5
PGR142G4205 Punica granatum HOM05D004481 ORTHO05D005350 1.5e-82 310.5 280 53.6
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.0e-82 310.1 283 53.7
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.0e-82 310.1 283 53.7
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 2.0e-82 310.1 283 53.7
AT4G34270 Arabidopsis thaliana HOM05D004481 ORTHO05D005350 4.4e-82 308.9 282 53.5
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 4.4e-82 308.9 313 51.1
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 5.8e-82 308.5 282 53.5
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 7.5e-82 308.1 280 53.9
Lalb_Chr21g0308241 Lupinus albus HOM05D004481 ORTHO05D005350 7.5e-82 308.1 284 53.2
SGA_v2.0_scaffold225G42995 Striga asiatica HOM05D004481 ORTHO05D005350 7.5e-82 308.1 282 54.6
Zm00001eb214380 Zea mays HOM05D004481 ORTHO05D005350 7.5e-82 308.1 276 53.6
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 9.8e-82 307.8 280 54.6
PSO170G4403 Papaver somniferum HOM05D004481 ORTHO05D005350 1.3e-81 307.4 287 53.0
AL7G17000 Arabidopsis lyrata HOM05D004481 ORTHO05D005350 1.7e-81 307.0 288 52.1
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 1.7e-81 307.0 280 52.9
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 1.7e-81 307.0 283 53.7
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 2.2e-81 306.6 282 53.2
Ca_11058_v3 Cicer arietinum L. HOM05D004481 ORTHO05D005350 2.9e-81 306.2 281 53.4
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 2.9e-81 306.2 290 52.8
Lalb_Chr02g0145211 Lupinus albus HOM05D004481 ORTHO05D005350 2.9e-81 306.2 280 52.9
Os03g0760600 Oryza sativa ssp. japonica HOM05D004481 ORTHO05D005350 4.9e-81 305.4 278 52.5
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 6.4e-81 305.1 280 55.0
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 6.4e-81 305.1 280 53.6
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 8.3e-81 304.7 280 52.9
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 1.1e-80 304.3 280 53.2
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 1.4e-80 303.9 280 54.3
CARHR242510 Cardamine hirsuta HOM05D004481 ORTHO05D005350 1.4e-80 303.9 274 53.3
Thhalv10025895m.g Eutrema salsugineum HOM05D004481 ORTHO05D005350 1.4e-80 303.9 281 53.0
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 1.4e-80 303.9 282 52.1
Migut.B00402 Erythranthe guttata HOM05D004481 ORTHO05D005350 4.1e-80 302.4 276 55.8
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 5.4e-80 302.0 280 53.6
ATR0661G316 Amborella trichopoda HOM05D004481 ORTHO05D005350 1.6e-79 300.4 242 58.7
AagrBONN_evm.TU.Sc2ySwM_228.2403 Anthoceros agrestis HOM05D004481 ORTHO05D005350 2.7e-79 299.7 236 57.6
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 3.5e-79 299.3 281 52.0
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 6.0e-79 298.5 285 53.0
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 7.8e-79 298.1 279 52.0
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 1.3e-78 297.4 324 48.1
unitig_0.g879 Utricularia gibba HOM05D004481 ORTHO05D005350 6.6e-78 295.0 281 53.0
CDE02G3699 Ceratophyllum demersum HOM05D004481 ORTHO05D005350 8.6e-78 294.7 268 51.9
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 1.9e-77 293.5 290 51.4
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 2.5e-77 293.1 293 49.8
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 4.3e-77 292.4 320 47.2
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 5.6e-77 292.0 296 51.0
CSS0003948 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 9.5e-77 291.2 277 52.7
Dinv42206 Davidia involucrata HOM05D002228 ORTHO05D005350 1.6e-76 290.4 239 57.7
SalBow6G4388 Salvia bowleyana HOM05D004481 ORTHO05D005350 1.4e-75 287.3 323 48.3
SalBow6G4779 Salvia bowleyana HOM05D004481 ORTHO05D005350 1.4e-75 287.3 323 48.3
arahy.Tifrunner.gnm1.ann1.PGW4NS Arachis hypogaea HOM05D004481 ORTHO05D005350 5.2e-75 285.4 247 55.5
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 7.5e-74 281.6 277 50.9
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 9.8e-74 281.2 248 55.6
DCAR_021976 Daucus carota HOM05D004481 ORTHO05D005350 3.7e-73 279.3 247 55.5
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 4.1e-72 275.8 250 55.2
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 1.6e-71 273.9 284 49.6
CiPaw.05G013400 Carya illinoinensis HOM05D004481 ORTHO05D005350 2.1e-71 273.5 232 56.0
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 2.1e-71 273.5 278 49.6
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 3.5e-71 272.7 245 54.3
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 1.1e-69 267.7 249 53.0
SHI05271 Sapria himalayana HOM05D004481 ORTHO05D005350 1.4e-67 260.8 254 53.1
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 4.4e-66 255.8 282 48.9
Hma1.2p1_1023F.1_g249000 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 2.2e-65 253.4 208 59.1
Ah.01g010900 Amaranthus hybridus HOM05D004481 ORTHO05D005350 6.4e-65 251.9 293 44.7
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 4.1e-64 249.2 288 45.1
MCO13G563 Micromonas commoda HOM05D004481 ORTHO05D005350 6.4e-57 225.3 267 45.7
FAN20G2321 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.1e-56 224.6 280 42.9
AUR62039053 Chenopodium quinoa HOM05D004481 ORTHO05D005350 1.5e-53 214.2 260 45.0
Actinidia00401 Actinidia chinensis HOM05D004481 ORTHO05D005350 7.6e-50 201.8 222 50.5
HPP92_010143 Vanilla planifolia HOM05D004481 ORTHO05D005350 2.9e-49 199.9 181 52.5
PRCOL_00000955 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 1.7e-46 190.7 263 39.2
Sopen10g019880 Solanum pennellii HOM05D004481 ORTHO05D005350 1.6e-44 184.1 167 51.5
BcaNung04162 Brassica carinata HOM05D004481 ORTHO05D005350 1.5e-37 161.0 287 35.9
CBR_g36716 Chara braunii HOM05D004481 ORTHO05D005350 2.8e-36 156.8 108 63.9
Cre17.g734150 Chlamydomonas reinhardtii HOM05D004481 ORTHO05D005350 1.1e-35 154.8 391 28.9
MD00G1108700 Malus domestica HOM05D004481 ORTHO05D005350 5.8e-34 149.1 124 55.6
BolC3t17849H Brassica oleracea HOM05D004481 ORTHO05D005350 7.6e-34 148.7 143 51.7
BcaC01g03137 Brassica carinata HOM05D004481 ORTHO05D005350 1.2e-31 141.4 144 49.3
C03p55700 Brassica napus HOM05D004481 ORTHO05D005350 2.7e-31 140.2 143 49.7
Cfa024874 Carpinus fangiana HOM05D004481 ORTHO05D005350 2.7e-31 140.2 222 36.9
BcaC08g44162 Brassica carinata HOM05D004481 ORTHO05D005350 1.1e-29 134.8 130 52.3
CSS0037652 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.3e-20 104.8 154 40.3
Actinidia34390 Actinidia chinensis HOM05D004481 ORTHO05D005350 2.9e-17 93.6 63 65.1
PRCOL_00004768 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 3.8e-17 93.2 175 34.9
BcaNung04988 Brassica carinata HOM05D004481 ORTHO05D005350 1.8e-14 84.3 95 49.5
Hund00159 Selenicereus undatus HOM05D004481 ORTHO05D005350 3.3e-13 80.1 98 41.8
Sopen01g049660 Solanum pennellii HOM05D004481 ORTHO05D005350 2.8e-12 77.0 76 50.0
Sopen01g049670 Solanum pennellii HOM05D004481 ORTHO05D005350 2.8e-12 77.0 70 51.4
Peaxi162Scf00003g02548 Petunia axillaris HOM05D004481 ORTHO05D005350 1.4e-11 74.7 166 31.3
CSS0049178 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 1.5e-10 71.2 68 51.5
CSS0039068 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 2.6e-10 70.5 65 52.3
GSVIVG01003443001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.0e-09 68.6 47 63.8
GSVIVG01003244001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.7e-09 67.8 47 63.8
GSVIVG01030751001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.7e-09 67.8 47 63.8
Lsat_1_v5_gn_5_116621 Lactuca sativa HOM05D000552 ORTHO05D000469 4.2e-08 63.2 37 67.6
Solyc01g107420.2 Solanum lycopersicum HOM05D004481 ORTHO05D005350 4.2e-08 63.2 37 75.7
GSVIVG01030757001 Vitis vinifera HOM05D004481 ORTHO05D005350 2.7e-07 60.5 47 57.4
VMungo0251G0056 Vigna mungo HOM05D005531 ORTHO05D006332 3.6e-07 60.1 102 37.3
RcHm_v2.0_Chr6g0257521 Rosa chinensis HOM05D004481 ORTHO05D005350 3.0e-06 57.0 54 44.4
Atru.chr12.2105 Acer truncatum HOM05D004481 ORTHO05D005350 3.9e-06 56.6 86 39.5


User provided reference genes

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