Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 2.9e-180 635.2 339 100.0
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 4.3e-91 339.0 323 57.9
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 1.3e-90 337.4 314 57.6
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 3.6e-90 335.9 272 64.0
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 8.1e-90 334.7 262 66.4
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 1.1e-78 297.7 326 53.1
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 1.1e-78 297.7 262 58.0
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 2.1e-77 293.5 262 58.8
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 2.1e-77 293.5 262 58.0
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 4.6e-77 292.4 262 57.3
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 6.0e-77 292.0 267 56.2
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 7.9e-77 291.6 265 57.4
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 7.9e-77 291.6 265 57.4
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 1.0e-76 291.2 263 57.4
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.3e-76 290.8 265 57.4
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 1.8e-76 290.4 271 55.0
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 1.8e-76 290.4 263 57.0
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 1.8e-76 290.4 262 57.3
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 3.0e-76 289.7 270 57.8
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 3.9e-76 289.3 264 55.3
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 3.9e-76 289.3 267 58.4
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 5.1e-76 288.9 262 58.0
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 5.1e-76 288.9 265 57.0
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 5.1e-76 288.9 263 56.7
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 8.7e-76 288.1 267 57.7
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 8.7e-76 288.1 265 54.7
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 8.7e-76 288.1 265 54.7
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 1.1e-75 287.7 262 55.3
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 1.1e-75 287.7 262 54.6
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 1.5e-75 287.3 267 57.3
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 1.5e-75 287.3 261 56.3
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 1.9e-75 287.0 267 56.9
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 2.5e-75 286.6 267 56.9
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 2.5e-75 286.6 267 56.9
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 2.5e-75 286.6 261 55.2
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 2.5e-75 286.6 262 56.5
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 2.5e-75 286.6 265 56.6
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 2.5e-75 286.6 263 56.7
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 3.3e-75 286.2 263 56.3
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 4.3e-75 285.8 261 54.8
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 5.6e-75 285.4 262 56.5
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 7.4e-75 285.0 262 56.9
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 7.4e-75 285.0 262 55.7
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 9.6e-75 284.6 262 57.6
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 9.6e-75 284.6 266 57.1
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 9.6e-75 284.6 262 55.7
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 1.3e-74 284.3 263 55.5
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 1.3e-74 284.3 267 56.9
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 1.3e-74 284.3 264 54.5
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 1.3e-74 284.3 262 54.6
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 1.3e-74 284.3 268 56.3
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 1.3e-74 284.3 264 55.7
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 1.6e-74 283.9 262 55.3
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 1.6e-74 283.9 262 55.7
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 2.8e-74 283.1 262 55.0
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 2.8e-74 283.1 261 54.0
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 3.7e-74 282.7 261 54.4
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 3.7e-74 282.7 276 55.1
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 4.8e-74 282.3 262 54.2
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 4.8e-74 282.3 263 57.0
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 6.2e-74 282.0 267 56.2
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 6.2e-74 282.0 262 54.6
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 6.2e-74 282.0 263 57.8
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 8.2e-74 281.6 262 57.3
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 8.2e-74 281.6 262 57.3
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 8.2e-74 281.6 262 57.3
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 8.2e-74 281.6 261 53.6
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 8.2e-74 281.6 262 54.2
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 1.1e-73 281.2 267 56.2
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 1.1e-73 281.2 263 57.4
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 1.1e-73 281.2 263 57.4
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 1.1e-73 281.2 265 54.7
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 1.1e-73 281.2 261 56.3
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 1.4e-73 280.8 267 56.6
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 1.8e-73 280.4 266 57.1
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 1.8e-73 280.4 269 53.5
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 1.8e-73 280.4 263 56.3
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 2.4e-73 280.0 263 54.8
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 2.4e-73 280.0 267 55.8
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 2.4e-73 280.0 265 54.7
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 2.4e-73 280.0 262 53.8
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 2.4e-73 280.0 262 56.1
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 2.4e-73 280.0 262 55.3
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 3.1e-73 279.6 265 55.8
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 4.0e-73 279.3 293 53.2
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 4.0e-73 279.3 262 54.2
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 4.0e-73 279.3 262 53.8
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 4.0e-73 279.3 262 53.4
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 4.0e-73 279.3 275 54.9
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 4.0e-73 279.3 267 54.3
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 4.0e-73 279.3 265 55.8
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 4.0e-73 279.3 274 52.9
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 6.9e-73 278.5 261 54.0
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 6.9e-73 278.5 267 53.9
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 6.9e-73 278.5 272 53.3
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 6.9e-73 278.5 265 57.0
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 9.0e-73 278.1 262 54.6
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 1.2e-72 277.7 262 53.4
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 2.0e-72 276.9 263 55.9
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 2.6e-72 276.6 266 51.5
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 2.6e-72 276.6 261 55.6
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 3.4e-72 276.2 263 55.5
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 7.6e-72 275.0 265 54.0
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 1.7e-71 273.9 265 54.0
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 3.8e-71 272.7 269 50.9
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 1.9e-70 270.4 263 52.5
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 4.2e-70 269.2 263 52.9
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 4.2e-70 269.2 262 53.8
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 2.1e-69 266.9 279 50.5
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 3.0e-68 263.1 262 53.1
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 5.1e-68 262.3 265 52.8
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 6.7e-68 261.9 265 52.8
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 1.5e-67 260.8 262 51.9
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 4.3e-67 259.2 308 48.7
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 3.7e-66 256.1 328 44.5
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 6.3e-66 255.4 276 49.3
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 5.3e-65 252.3 265 50.9
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 9.0e-65 251.5 312 45.8
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 1.7e-63 247.3 262 50.8
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 2.2e-63 246.9 261 46.0
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 6.5e-63 245.4 256 48.4
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 2.5e-62 243.4 260 46.5
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 2.1e-61 240.4 263 51.7
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 1.0e-60 238.0 357 39.8
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 3.9e-60 236.1 262 48.1
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 2.1e-53 213.8 208 54.3
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 2.7e-53 213.4 245 51.4
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 2.2e-50 203.8 245 49.8
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 6.3e-50 202.2 272 46.7
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 1.1e-49 201.4 248 49.2
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 1.4e-49 201.1 249 49.4
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 1.8e-49 200.7 272 46.7
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 5.9e-48 195.7 159 60.4
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 5.9e-48 195.7 159 60.4
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 1.7e-47 194.1 272 45.2
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 5.0e-47 192.6 272 45.2
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 1.1e-46 191.4 272 44.1
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 1.0e-44 184.9 159 56.6
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 1.4e-44 184.5 215 49.8
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 3.3e-43 179.9 252 45.2
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 4.5e-40 169.5 138 61.6
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 1.0e-39 168.3 289 40.5
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 2.9e-39 166.8 246 43.5
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 3.8e-39 166.4 227 45.4
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 3.2e-38 163.3 425 32.7
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 9.4e-38 161.8 137 61.3
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 2.1e-37 160.6 248 46.0
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 6.7e-36 155.6 128 65.6
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 1.5e-35 154.5 267 40.8
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 4.4e-35 152.9 240 42.5
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 4.5e-32 142.9 148 52.0
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 7.7e-32 142.1 261 35.6
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 5.0e-31 139.4 262 34.7
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 8.5e-31 138.7 136 53.7
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 1.9e-30 137.5 134 48.5
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 8.8e-28 128.6 153 51.6
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 9.8e-27 125.2 96 62.5
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 2.4e-25 120.6 122 52.5
FAN06G3481 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.2e-24 118.2 162 45.7
Medtr1046s0010 Medicago truncatula HOM05D003833 ORTHO05D004209 2.9e-23 113.6 269 30.5
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 1.9e-22 110.9 286 29.0
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 9.2e-17 92.0 123 41.5
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 2.7e-16 90.5 69 65.2
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 1.1e-14 85.1 154 37.7
FvH4_7g06311 Fragaria vesca HOM05D003833 ORTHO05D004209 7.3e-14 82.4 73 57.5
MBI10_g20272_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.0e-12 78.6 59 64.4
RcHm_v2.0_Chr2g0125031 Rosa chinensis HOM05D003833 ORTHO05D004209 6.8e-12 75.9 127 38.6
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 2.2e-10 70.9 48 70.8
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 2.9e-10 70.5 48 68.8
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 2.9e-10 70.5 48 68.8
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 4.9e-10 69.7 48 70.8
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 4.9e-10 69.7 70 47.1
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 1.4e-09 68.2 48 68.8
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 9.2e-09 65.5 46 67.4
BolC4t24812H Brassica oleracea HOM05D003833 ORTHO05D004209 2.7e-08 63.9 70 47.1
BcaNung06051 Brassica carinata HOM05D003833 ORTHO05D004209 6.6e-07 59.3 58 51.7


User provided reference genes

Program Settings