Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_15170 Physcomitrium patens HOM05D005690 ORTHO05D007075 9.9e-115 416.8 206 100.0
Mapoly0033s0041 Marchantia polymorpha HOM05D005690 ORTHO05D007075 1.7e-53 213.4 208 54.3
AagrBONN_evm.TU.Sc2ySwM_362.1612 Anthoceros agrestis HOM05D005690 ORTHO05D007075 2.5e-49 199.5 139 67.6
Mapoly0033s0042 Marchantia polymorpha HOM05D005690 ORTHO05D007075 6.3e-45 184.9 202 49.0
SEGI_15078 Sequoiadendron giganteum HOM05D005690 ORTHO05D007075 6.3e-45 184.9 151 57.6
Atru.chr12.697 Acer truncatum HOM05D005690 ORTHO05D007075 4.1e-44 182.2 189 48.7
CANSAT56G3535 Cannabis sativa HOM05D005690 ORTHO05D007075 4.1e-44 182.2 206 48.1
TAR633G2147 Trochodendron aralioides HOM05D005690 ORTHO05D007075 7.0e-44 181.4 204 45.6
Peaxi162Scf00108g00166 Petunia axillaris HOM05D005690 ORTHO05D007075 9.1e-44 181.0 205 47.3
Nn2g13015 Nelumbo nucifera HOM05D005690 ORTHO05D007075 1.2e-43 180.6 194 46.4
Atru.chr12.670 Acer truncatum HOM05D005690 ORTHO05D007075 1.6e-43 180.3 189 48.1
Os03g0853800 Oryza sativa ssp. japonica HOM05D005690 ORTHO05D007075 1.6e-43 180.3 154 53.9
Ah.16g108410 Amaranthus hybridus HOM05D005690 ORTHO05D007075 2.7e-43 179.5 174 50.0
Haze_16926 Corylus avellana HOM05D005690 ORTHO05D007075 2.7e-43 179.5 174 50.0
CiPaw.02G175700 Carya illinoinensis HOM05D005690 ORTHO05D007075 3.5e-43 179.1 195 47.2
Cc02_g11390 Coffea canephora HOM05D005690 ORTHO05D007075 4.5e-43 178.7 200 47.5
Zm00001eb064810 Zea mays HOM05D005690 ORTHO05D007075 4.5e-43 178.7 147 56.5
Dinv11797 Davidia involucrata HOM05D005690 ORTHO05D007075 5.9e-43 178.3 192 47.9
FvH4_7g20020 Fragaria vesca HOM05D005690 ORTHO05D007075 5.9e-43 178.3 174 50.6
FAN01G0973 Fragaria x ananassa HOM05D005690 ORTHO05D007075 5.9e-43 178.3 174 50.6
FAN03G1698 Fragaria x ananassa HOM05D005690 ORTHO05D007075 5.9e-43 178.3 174 50.6
FAN06G0212 Fragaria x ananassa HOM05D005690 ORTHO05D007075 5.9e-43 178.3 174 50.6
FAN10G0816 Fragaria x ananassa HOM05D005690 ORTHO05D007075 5.9e-43 178.3 174 50.6
QL08p056659 Quercus lobata HOM05D005690 ORTHO05D007075 5.9e-43 178.3 171 49.1
GSVIVG01016316001 Vitis vinifera HOM05D005690 ORTHO05D007075 5.9e-43 178.3 177 50.3
Cfa001602 Carpinus fangiana HOM05D005690 ORTHO05D007075 7.7e-43 177.9 177 50.3
Phvul.004G075000 Phaseolus vulgaris HOM05D005690 ORTHO05D007075 1.0e-42 177.6 144 56.2
MELO3C002879.2 Cucumis melo HOM05D005690 ORTHO05D007075 1.7e-42 176.8 171 50.3
RcHm_v2.0_Chr1g0363981 Rosa chinensis HOM05D005690 ORTHO05D007075 1.7e-42 176.8 174 50.0
TAR636G2049 Trochodendron aralioides HOM05D005690 ORTHO05D007075 1.7e-42 176.8 211 45.5
Lj2g0014971 Lotus japonicus HOM05D005690 ORTHO05D007075 2.2e-42 176.4 177 49.2
Ciclev10032614m.g Citrus clementina HOM05D005690 ORTHO05D007075 2.9e-42 176.0 179 48.6
Glyma.17G183500 Glycine max HOM05D005690 ORTHO05D007075 2.9e-42 176.0 180 48.9
Hma1.2p1_0453F.1_g156020 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 2.9e-42 176.0 179 48.6
Hma1.2p1_2080F.1_g313490 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 2.9e-42 176.0 179 48.6
COL.COLO4_32034 Corchorus olitorius HOM05D005690 ORTHO05D007075 3.8e-42 175.6 174 49.4
Gohir.D06G176800 Gossypium hirsutum HOM05D005690 ORTHO05D007075 3.8e-42 175.6 174 48.3
Gorai.010G204700 Gossypium raimondii HOM05D005690 ORTHO05D007075 3.8e-42 175.6 174 48.3
Manes.07G103000 Manihot esculenta HOM05D005690 ORTHO05D007075 5.0e-42 175.3 180 48.3
Thecc.10G069500 Theobroma cacao HOM05D005690 ORTHO05D007075 5.0e-42 175.3 174 47.7
VMungo0464G0948 Vigna mungo HOM05D005690 ORTHO05D007075 5.0e-42 175.3 177 48.6
CsaV3_5G025890 Cucumis sativus L. HOM05D005690 ORTHO05D007075 6.5e-42 174.9 177 49.2
vmacro04884 Vaccinium macrocarpon HOM05D005690 ORTHO05D007075 8.5e-42 174.5 177 49.2
ECA232G2854 Erigeron canadensis HOM05D005690 ORTHO05D007075 1.1e-41 174.1 196 47.4
AUR62020766 Chenopodium quinoa HOM05D005690 ORTHO05D007075 1.5e-41 173.7 204 45.1
Eucgr.J01111 Eucalyptus grandis HOM05D005690 ORTHO05D007075 1.9e-41 173.3 176 48.9
Hund19342 Selenicereus undatus HOM05D005690 ORTHO05D007075 1.9e-41 173.3 203 44.8
ATR1159G074 Amborella trichopoda HOM05D005690 ORTHO05D007075 2.5e-41 172.9 145 55.2
AUR62027946 Chenopodium quinoa HOM05D005690 ORTHO05D007075 2.5e-41 172.9 189 47.6
Gohir.A06G178200 Gossypium hirsutum HOM05D005690 ORTHO05D007075 2.5e-41 172.9 174 47.7
Rhsim09G0153300 Rhododendron simsii HOM05D005690 ORTHO05D007075 2.5e-41 172.9 177 46.9
MSTRG.373 Avicennia marina HOM05D005690 ORTHO05D007075 3.2e-41 172.6 154 51.9
Duzib114G0556 Durio zibethinus HOM05D005690 ORTHO05D007075 3.2e-41 172.6 198 44.4
Sabra08G0029500 Salix brachista HOM05D005690 ORTHO05D007075 4.2e-41 172.2 174 48.9
Sed0011214 Sechium edule HOM05D005690 ORTHO05D007075 5.5e-41 171.8 177 48.6
SGA_v2.0_scaffold28G12052 Striga asiatica HOM05D005690 ORTHO05D007075 5.5e-41 171.8 158 50.0
AT2G35790 Arabidopsis thaliana HOM05D005690 ORTHO05D007075 7.2e-41 171.4 149 54.4
MD01G1111700 Malus domestica HOM05D005690 ORTHO05D007075 7.2e-41 171.4 197 46.2
MD07G1177900 Malus domestica HOM05D005690 ORTHO05D007075 7.2e-41 171.4 200 45.0
Sabra10G0169300 Salix brachista HOM05D005690 ORTHO05D007075 7.2e-41 171.4 175 49.1
TWI38G1302 Tripterygium wilfordii HOM05D005690 ORTHO05D007075 9.4e-41 171.0 175 47.4
ClCG09G020510 Citrullus lanatus HOM05D005690 ORTHO05D007075 1.2e-40 170.6 168 48.2
Lalb_Chr19g0129571 Lupinus albus HOM05D005690 ORTHO05D007075 1.2e-40 170.6 177 47.5
MBI05_g11579_MAGBIO Magnolia biondii HOM05D005690 ORTHO05D007075 1.6e-40 170.2 182 46.7
Nitab4.5_0012288g0020 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.6e-40 170.2 174 46.6
HPP92_003607 Vanilla planifolia HOM05D005690 ORTHO05D007075 1.6e-40 170.2 179 48.6
AL4G31900 Arabidopsis lyrata HOM05D005690 ORTHO05D007075 2.1e-40 169.9 149 53.7
HanXRQChr09g0246501 Helianthus annuus HOM05D005690 ORTHO05D007075 2.1e-40 169.9 185 45.9
Lsat_1_v5_gn_9_67140 Lactuca sativa HOM05D005690 ORTHO05D007075 2.1e-40 169.9 200 45.0
Peaxi162Scf01175g00023 Petunia axillaris HOM05D005690 ORTHO05D007075 2.1e-40 169.9 206 43.7
Potri.010G219000 Populus trichocarpa HOM05D005690 ORTHO05D007075 2.1e-40 169.9 175 48.0
Potri.010G219400 Populus trichocarpa HOM05D005690 ORTHO05D007075 2.1e-40 169.9 175 48.0
Ca_04676_v3 Cicer arietinum L. HOM05D005690 ORTHO05D007075 2.7e-40 169.5 176 46.6
EL10Ac2g03578 Beta vulgaris HOM05D005690 ORTHO05D007075 3.6e-40 169.1 175 47.4
CARHR130040 Cardamine hirsuta HOM05D005690 ORTHO05D007075 3.6e-40 169.1 149 53.7
Prupe.2G217200 Prunus persica HOM05D005690 ORTHO05D007075 3.6e-40 169.1 174 50.0
PGSC0003DMG400023460 Solanum tuberosum HOM05D005690 ORTHO05D007075 3.6e-40 169.1 203 44.3
Aa31LG9G7550 Aethionema arabicum HOM05D005690 ORTHO05D007075 4.7e-40 168.7 174 49.4
Carub.0004s1755 Capsella rubella HOM05D005690 ORTHO05D007075 4.7e-40 168.7 182 47.8
Nitab4.5_0000476g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 4.7e-40 168.7 144 54.2
THA.LOC104802837 Tarenaya hassleriana HOM05D005690 ORTHO05D007075 4.7e-40 168.7 144 54.9
Rhsim03G0123000 Rhododendron simsii HOM05D005690 ORTHO05D007075 6.1e-40 168.3 175 49.7
SalBow3G1299 Salvia bowleyana HOM05D005690 ORTHO05D007075 6.1e-40 168.3 149 53.7
SalBow4G1295 Salvia bowleyana HOM05D005690 ORTHO05D007075 6.1e-40 168.3 172 50.0
Nitab4.5_0000233g0230 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.8e-39 166.8 173 46.2
Sopen05g034500 Solanum pennellii HOM05D005690 ORTHO05D007075 1.8e-39 166.8 204 44.1
TPR.G36634 Trifolium pratense HOM05D005690 ORTHO05D007075 1.8e-39 166.8 177 46.9
Cpa.g.sc53.43 Carica papaya HOM05D005690 ORTHO05D007075 2.3e-39 166.4 174 47.7
HanXRQChr17g0563371 Helianthus annuus HOM05D005690 ORTHO05D007075 2.3e-39 166.4 177 46.9
Nitab4.5_0009003g0010 Nicotiana tabacum HOM05D005690 ORTHO05D007075 2.3e-39 166.4 144 52.8
Potri.008G042800 Populus trichocarpa HOM05D005690 ORTHO05D007075 2.3e-39 166.4 180 46.7
PGR044G2452 Punica granatum HOM05D005690 ORTHO05D007075 2.3e-39 166.4 154 51.3
Solyc05g056090.3 Solanum lycopersicum HOM05D005690 ORTHO05D007075 2.3e-39 166.4 204 44.1
CAN.G694.84 Capsicum annuum HOM05D005690 ORTHO05D007075 4.0e-39 165.6 184 46.2
Thhalv10017166m.g Eutrema salsugineum HOM05D005690 ORTHO05D007075 4.0e-39 165.6 195 45.1
BcaB06g28872 Brassica carinata HOM05D005690 ORTHO05D007075 5.2e-39 165.2 202 40.6
Sp4g18050 Schrenkiella parvula HOM05D005690 ORTHO05D007075 5.2e-39 165.2 149 52.3
Eucgr.J01110 Eucalyptus grandis HOM05D005690 ORTHO05D007075 6.8e-39 164.9 181 48.1
A03p19730 Brassica napus HOM05D005690 ORTHO05D007075 1.2e-38 164.1 199 43.7
arahy.Tifrunner.gnm1.ann1.08HL34 Arachis hypogaea HOM05D005690 ORTHO05D007075 1.5e-38 163.7 177 45.8
arahy.Tifrunner.gnm1.ann1.8E9GH8 Arachis hypogaea HOM05D005690 ORTHO05D007075 1.5e-38 163.7 177 45.8
A04p27260 Brassica napus HOM05D005690 ORTHO05D007075 1.5e-38 163.7 194 44.8
BcaB01g03881 Brassica carinata HOM05D005690 ORTHO05D007075 2.6e-38 162.9 137 54.7
BcaC01g05707 Brassica carinata HOM05D005690 ORTHO05D007075 2.6e-38 162.9 137 54.7
C03p22980 Brassica napus HOM05D005690 ORTHO05D007075 2.6e-38 162.9 137 54.7
Migut.F01989 Erythranthe guttata HOM05D005690 ORTHO05D007075 2.6e-38 162.9 176 46.6
Sed0019941 Sechium edule HOM05D005690 ORTHO05D007075 3.4e-38 162.5 174 47.1
Medtr6g033405 Medicago truncatula HOM05D005690 ORTHO05D007075 4.4e-38 162.2 154 50.0
SMO239G0063 Selaginella moellendorffii HOM05D005690 ORTHO05D007075 5.7e-38 161.8 170 48.8
C04p64770 Brassica napus HOM05D005690 ORTHO05D007075 7.5e-38 161.4 201 42.3
BolC4t27955H Brassica oleracea HOM05D005690 ORTHO05D007075 9.8e-38 161.0 139 54.0
BraA04t18224Z Brassica rapa HOM05D005690 ORTHO05D007075 9.8e-38 161.0 139 54.0
PSO384G2564 Papaver somniferum HOM05D005690 ORTHO05D007075 1.3e-37 160.6 182 44.5
BcaC02g07668 Brassica carinata HOM05D005690 ORTHO05D007075 6.3e-37 158.3 149 51.7
PSO339G2382 Papaver somniferum HOM05D005690 ORTHO05D007075 6.3e-37 158.3 182 43.4
unitig_0.g529 Utricularia gibba HOM05D005690 ORTHO05D007075 8.3e-37 157.9 142 48.6
CDE04G0636 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 3.1e-36 156.0 188 42.6
CDE07G1130 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 3.5e-35 152.5 143 48.3
Aqoxy6G02013 Aquilegia oxysepala HOM05D005690 ORTHO05D007075 7.7e-35 151.4 160 45.6
Sc06g0001780 Simmondsia chinensis HOM05D005690 ORTHO05D007075 1.0e-31 141.0 104 58.7
CSS0000246 Camellia sinensis var. sinensis HOM05D005690 ORTHO05D007075 5.7e-30 135.2 144 47.2
Lj8C97T4 Lonicera japonica HOM05D005690 ORTHO05D007075 7.5e-30 134.8 104 56.7
Peaxi162Scf00108g00173 Petunia axillaris HOM05D005690 ORTHO05D007075 1.6e-27 127.1 108 50.9
BcaB01g03882 Brassica carinata HOM05D005690 ORTHO05D007075 2.8e-24 116.3 95 53.7
Nitab4.5_0003072g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 6.1e-24 115.2 144 41.7
CiPaw.01G275500 Carya illinoinensis HOM05D005690 ORTHO05D007075 2.3e-23 113.2 124 44.4
Psat1g099440 Pisum sativum HOM05D005690 ORTHO05D007075 3.2e-20 102.8 83 51.8
MCO03G451 Micromonas commoda HOM05D005690 ORTHO05D007075 2.8e-16 89.7 135 38.5
Cre12.g540051 Chlamydomonas reinhardtii HOM05D005690 ORTHO05D007075 6.8e-15 85.1 142 31.0
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 1.2e-11 74.3 71 43.7
Lalb_Chr01g0010161 Lupinus albus HOM05D005690 ORTHO05D007075 1.1e-07 61.2 53 49.1


User provided reference genes

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