Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_14840 Physcomitrium patens HOM05D003590 ORTHO05D004290 8.7e-191 670.2 361 100.0
Mapoly0058s0048 Marchantia polymorpha HOM05D003590 ORTHO05D004290 8.1e-72 275.0 244 59.8
Pp3c7_13570 Physcomitrium patens HOM05D003590 ORTHO05D004290 2.0e-70 270.4 239 59.8
Pp3c2_28040 Physcomitrium patens HOM05D003590 ORTHO05D004290 9.9e-70 268.1 246 58.1
PGSC0003DMG400016231 Solanum tuberosum HOM05D003590 ORTHO05D004290 1.4e-68 264.2 253 57.3
CANSAT54G1837 Cannabis sativa HOM05D003590 ORTHO05D004290 3.2e-68 263.1 252 58.7
MSTRG.8205 Avicennia marina HOM05D003590 ORTHO05D004290 5.5e-68 262.3 260 55.4
Dinv15385 Davidia involucrata HOM05D003590 ORTHO05D004290 5.5e-68 262.3 256 56.6
Thecc.04G169500 Theobroma cacao HOM05D003590 ORTHO05D004290 5.5e-68 262.3 240 59.2
Solyc11g008990.2 Solanum lycopersicum HOM05D003590 ORTHO05D004290 7.1e-68 261.9 253 56.5
Sopen11g004770 Solanum pennellii HOM05D003590 ORTHO05D004290 7.1e-68 261.9 253 56.5
CAN.G1177.3 Capsicum annuum HOM05D003590 ORTHO05D004290 9.3e-68 261.5 245 58.0
Nitab4.5_0004390g0060 Nicotiana tabacum HOM05D003590 ORTHO05D004290 9.3e-68 261.5 245 58.0
Peaxi162Scf00074g01833 Petunia axillaris HOM05D003590 ORTHO05D004290 9.3e-68 261.5 245 58.4
Psat7g208480 Pisum sativum HOM05D003590 ORTHO05D004290 1.2e-67 261.2 237 59.9
ATR0743G202 Amborella trichopoda HOM05D003590 ORTHO05D004290 1.6e-67 260.8 276 53.3
Ca_20810_v3 Cicer arietinum L. HOM05D003590 ORTHO05D004290 1.6e-67 260.8 242 59.5
Duzib151G0409 Durio zibethinus HOM05D003590 ORTHO05D004290 1.6e-67 260.8 243 58.8
Gohir.A10G141800 Gossypium hirsutum HOM05D003590 ORTHO05D004290 1.6e-67 260.8 240 59.2
SMO115G0200 Selaginella moellendorffii HOM05D003590 ORTHO05D004290 1.6e-67 260.8 242 57.4
Cc09_g03870 Coffea canephora HOM05D003590 ORTHO05D004290 2.1e-67 260.4 248 57.3
CSS0039108 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 4.6e-67 259.2 302 51.7
COL.COLO4_10136 Corchorus olitorius HOM05D003590 ORTHO05D004290 4.6e-67 259.2 240 58.3
Gohir.D10G124700 Gossypium hirsutum HOM05D003590 ORTHO05D004290 4.6e-67 259.2 240 58.8
Gorai.011G137800 Gossypium raimondii HOM05D003590 ORTHO05D004290 4.6e-67 259.2 240 58.8
Duzib268G1650 Durio zibethinus HOM05D003590 ORTHO05D004290 6.0e-67 258.8 240 58.8
Eucgr.B01427 Eucalyptus grandis HOM05D003590 ORTHO05D004290 6.0e-67 258.8 252 58.3
GSVIVG01019065001 Vitis vinifera HOM05D003590 ORTHO05D004290 6.0e-67 258.8 252 57.1
PSO339G4307 Papaver somniferum HOM05D003590 ORTHO05D004290 7.9e-67 258.5 259 55.6
Eucgr.K00001 Eucalyptus grandis HOM05D003590 ORTHO05D004290 1.0e-66 258.1 252 57.9
MBI17_g21475_MAGBIO Magnolia biondii HOM05D003590 ORTHO05D004290 1.0e-66 258.1 250 57.2
Phvul.008G099200 Phaseolus vulgaris HOM05D003590 ORTHO05D004290 1.0e-66 258.1 240 58.8
TWI36G1101 Tripterygium wilfordii HOM05D003590 ORTHO05D004290 1.0e-66 258.1 245 56.7
CANSAT64G0301 Cannabis sativa HOM05D003590 ORTHO05D004290 1.3e-66 257.7 240 59.6
Dinv33190 Davidia involucrata HOM05D003590 ORTHO05D004290 1.3e-66 257.7 299 50.5
SEGI_22814 Sequoiadendron giganteum HOM05D003590 ORTHO05D004290 1.3e-66 257.7 247 55.9
HPP92_009006 Vanilla planifolia HOM05D003590 ORTHO05D004290 1.3e-66 257.7 248 57.3
Dinv29086 Davidia involucrata HOM05D003590 ORTHO05D004290 1.8e-66 257.3 258 55.8
Aqoxy2G04149 Aquilegia oxysepala HOM05D003590 ORTHO05D004290 2.3e-66 256.9 244 57.4
Gohir.D02G109000 Gossypium hirsutum HOM05D003590 ORTHO05D004290 2.3e-66 256.9 249 56.6
Gorai.005G124600 Gossypium raimondii HOM05D003590 ORTHO05D004290 2.3e-66 256.9 249 56.6
MBI07_g22611_MAGBIO Magnolia biondii HOM05D003590 ORTHO05D004290 2.3e-66 256.9 239 59.0
Prupe.1G203200 Prunus persica HOM05D003590 ORTHO05D004290 2.3e-66 256.9 240 58.3
Sc06g0005010 Simmondsia chinensis HOM05D003590 ORTHO05D004290 2.3e-66 256.9 300 51.0
VMungo1383G1305 Vigna mungo HOM05D003590 ORTHO05D004290 2.3e-66 256.9 240 58.3
Glyma.11G124800 Glycine max HOM05D003590 ORTHO05D004290 3.0e-66 256.5 240 58.8
Glyma.12G049400 Glycine max HOM05D003590 ORTHO05D004290 3.0e-66 256.5 240 58.8
Gohir.A02G091600 Gossypium hirsutum HOM05D003590 ORTHO05D004290 3.0e-66 256.5 249 56.6
Manes.04G049785 Manihot esculenta HOM05D003590 ORTHO05D004290 3.0e-66 256.5 245 57.1
RcHm_v2.0_Chr6g0285711 Rosa chinensis HOM05D003590 ORTHO05D004290 3.0e-66 256.5 240 57.5
Ah.06g195400 Amaranthus hybridus HOM05D003590 ORTHO05D004290 3.9e-66 256.1 283 52.7
Eucgr.A00018 Eucalyptus grandis HOM05D003590 ORTHO05D004290 3.9e-66 256.1 240 57.5
PSO384G2196 Papaver somniferum HOM05D003590 ORTHO05D004290 3.9e-66 256.1 259 55.2
RcHm_v2.0_Chr2g0122441 Rosa chinensis HOM05D003590 ORTHO05D004290 3.9e-66 256.1 239 58.6
TPR.G34214 Trifolium pratense HOM05D003590 ORTHO05D004290 3.9e-66 256.1 240 59.2
arahy.Tifrunner.gnm1.ann1.SY3MF3 Arachis hypogaea HOM05D003590 ORTHO05D004290 5.1e-66 255.8 240 57.9
Ciclev10021047m.g Citrus clementina HOM05D003590 ORTHO05D004290 5.1e-66 255.8 240 58.3
Phvul.008G052900 Phaseolus vulgaris HOM05D003590 ORTHO05D004290 6.7e-66 255.4 261 54.0
CDE08G0825 Ceratophyllum demersum HOM05D003590 ORTHO05D004290 8.7e-66 255.0 239 57.7
Manes.11G128000 Manihot esculenta HOM05D003590 ORTHO05D004290 8.7e-66 255.0 240 57.9
Nn7g37627 Nelumbo nucifera HOM05D003590 ORTHO05D004290 8.7e-66 255.0 240 57.5
Sed0014148 Sechium edule HOM05D003590 ORTHO05D004290 8.7e-66 255.0 255 54.9
arahy.Tifrunner.gnm1.ann1.YL8857 Arachis hypogaea HOM05D003590 ORTHO05D004290 1.1e-65 254.6 240 57.5
MELO3C017774.2 Cucumis melo HOM05D003590 ORTHO05D004290 1.1e-65 254.6 244 57.0
Cfa015230 Carpinus fangiana HOM05D003590 ORTHO05D004290 1.5e-65 254.2 250 55.6
Lalb_Chr07g0192831 Lupinus albus HOM05D003590 ORTHO05D004290 1.5e-65 254.2 239 58.2
Medtr4g068210 Medicago truncatula HOM05D003590 ORTHO05D004290 1.5e-65 254.2 240 57.9
Potri.006G123600 Populus trichocarpa HOM05D003590 ORTHO05D004290 1.5e-65 254.2 243 57.6
Glyma.18G243700 Glycine max HOM05D003590 ORTHO05D004290 2.5e-65 253.4 256 53.1
Lj1g0027383 Lotus japonicus HOM05D003590 ORTHO05D004290 2.5e-65 253.4 256 53.5
PGR042G3827 Punica granatum HOM05D003590 ORTHO05D004290 2.5e-65 253.4 240 56.7
SalBow6G6444 Salvia bowleyana HOM05D003590 ORTHO05D004290 2.5e-65 253.4 240 57.1
ClCG07G015120 Citrullus lanatus HOM05D003590 ORTHO05D004290 3.3e-65 253.1 240 57.5
CsaV3_4G002670 Cucumis sativus L. HOM05D003590 ORTHO05D004290 3.3e-65 253.1 244 56.6
CiPaw.01G172800 Carya illinoinensis HOM05D003590 ORTHO05D004290 4.3e-65 252.7 240 57.1
Oeu064494.2 Olea europaea HOM05D003590 ORTHO05D004290 4.3e-65 252.7 259 54.4
FAN26G3423 Fragaria x ananassa HOM05D003590 ORTHO05D004290 5.6e-65 252.3 253 56.5
HanXRQChr05g0149811 Helianthus annuus HOM05D003590 ORTHO05D004290 5.6e-65 252.3 233 57.9
TAR362G0082 Trochodendron aralioides HOM05D003590 ORTHO05D004290 5.6e-65 252.3 305 51.1
Zm00001eb144840 Zea mays HOM05D003590 ORTHO05D004290 5.6e-65 252.3 237 58.6
Atru.chr4.1363 Acer truncatum HOM05D003590 ORTHO05D004290 7.4e-65 251.9 251 55.0
Duzib212G0521 Durio zibethinus HOM05D003590 ORTHO05D004290 7.4e-65 251.9 240 57.1
Lj3g0023284 Lotus japonicus HOM05D003590 ORTHO05D004290 7.4e-65 251.9 240 58.8
PGR119G1440 Punica granatum HOM05D003590 ORTHO05D004290 7.4e-65 251.9 248 55.6
Sed0008844 Sechium edule HOM05D003590 ORTHO05D004290 7.4e-65 251.9 244 56.1
Lsat_1_v5_gn_8_26121 Lactuca sativa HOM05D003590 ORTHO05D004290 9.6e-65 251.5 247 55.1
Lalb_Chr19g0138461 Lupinus albus HOM05D003590 ORTHO05D004290 9.6e-65 251.5 240 57.5
MD00G1019200 Malus domestica HOM05D003590 ORTHO05D004290 9.6e-65 251.5 240 57.5
Migut.F01864 Erythranthe guttata HOM05D003590 ORTHO05D004290 1.3e-64 251.1 224 59.8
FvH4_2g19990 Fragaria vesca HOM05D003590 ORTHO05D004290 2.1e-64 250.4 297 49.8
MD17G1177400 Malus domestica HOM05D003590 ORTHO05D004290 2.1e-64 250.4 231 58.4
THA.LOC104805702 Tarenaya hassleriana HOM05D003590 ORTHO05D004290 3.7e-64 249.6 306 50.3
AagrBONN_evm.TU.Sc2ySwM_228.379 Anthoceros agrestis HOM05D003590 ORTHO05D004290 4.8e-64 249.2 232 56.9
Aa31LG2G2380 Aethionema arabicum HOM05D003590 ORTHO05D004290 8.1e-64 248.4 258 55.0
Zm00001eb365760 Zea mays HOM05D003590 ORTHO05D004290 1.1e-63 248.1 233 58.4
CiPaw.02G102900 Carya illinoinensis HOM05D003590 ORTHO05D004290 1.4e-63 247.7 240 55.8
CARHR056900 Cardamine hirsuta HOM05D003590 ORTHO05D004290 2.4e-63 246.9 250 55.6
HanXRQChr16g0500391 Helianthus annuus HOM05D003590 ORTHO05D004290 3.1e-63 246.5 232 56.9
Carub.0006s2551 Capsella rubella HOM05D003590 ORTHO05D004290 4.0e-63 246.1 258 53.9
Os01g0895100 Oryza sativa ssp. japonica HOM05D003590 ORTHO05D004290 4.0e-63 246.1 237 57.0
CBR_g79424 Chara braunii HOM05D003590 ORTHO05D004290 5.3e-63 245.7 230 57.4
DCAR_023942 Daucus carota HOM05D003590 ORTHO05D004290 5.3e-63 245.7 239 56.1
Lj3A152T20 Lonicera japonica HOM05D003590 ORTHO05D004290 6.9e-63 245.4 232 58.6
AL2G20260 Arabidopsis lyrata HOM05D003590 ORTHO05D004290 9.0e-63 245.0 263 53.2
Thhalv10018833m.g Eutrema salsugineum HOM05D003590 ORTHO05D004290 1.2e-62 244.6 243 55.1
AT1G65260 Arabidopsis thaliana HOM05D003590 ORTHO05D004290 1.5e-62 244.2 243 55.1
AUR62006641 Chenopodium quinoa HOM05D003590 ORTHO05D004290 1.5e-62 244.2 317 47.6
Actinidia27105 Actinidia chinensis HOM05D003590 ORTHO05D004290 2.0e-62 243.8 245 56.3
GSVIVG01038103001 Vitis vinifera HOM05D003590 ORTHO05D004290 2.0e-62 243.8 233 56.2
Sp5g19930 Schrenkiella parvula HOM05D003590 ORTHO05D004290 4.5e-62 242.7 243 54.7
BcaB05g24099 Brassica carinata HOM05D003590 ORTHO05D004290 5.8e-62 242.3 238 55.5
Potri.016G099400 Populus trichocarpa HOM05D003590 ORTHO05D004290 5.8e-62 242.3 240 55.0
unitig_52.g17513 Utricularia gibba HOM05D003590 ORTHO05D004290 7.6e-62 241.9 238 55.5
C02p21260 Brassica napus HOM05D003590 ORTHO05D004290 2.2e-61 240.4 238 55.0
BolC2t08266H Brassica oleracea HOM05D003590 ORTHO05D004290 3.8e-61 239.6 238 55.0
SGA_v2.0_scaffold62G21494 Striga asiatica HOM05D004200 ORTHO05D004996 3.8e-61 239.6 262 51.1
BcaC03g14688 Brassica carinata HOM05D003590 ORTHO05D004290 4.9e-61 239.2 238 54.6
DCAR_002151 Daucus carota HOM05D003590 ORTHO05D004290 4.9e-61 239.2 243 54.7
A02p13120 Brassica napus HOM05D003590 ORTHO05D004290 6.5e-61 238.8 238 54.6
BraA02t06368Z Brassica rapa HOM05D003590 ORTHO05D004290 6.5e-61 238.8 238 54.6
EL10Ac4g10000 Beta vulgaris HOM05D003590 ORTHO05D004290 8.4e-61 238.4 335 45.7
FAN27G0950 Fragaria x ananassa HOM05D003590 ORTHO05D004290 8.4e-61 238.4 268 50.7
vmacro00650 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 1.9e-60 237.3 291 48.5
vmacro00679 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 1.9e-60 237.3 291 48.5
QL10p052769 Quercus lobata HOM05D003590 ORTHO05D004290 9.3e-60 235.0 204 59.8
Nitab4.5_0009796g0040 Nicotiana tabacum HOM05D003590 ORTHO05D004290 1.6e-59 234.2 210 61.9
FAN15G3511 Fragaria x ananassa HOM05D003590 ORTHO05D004290 2.7e-59 233.4 337 45.4
Actinidia03270 Actinidia chinensis HOM05D003590 ORTHO05D004290 4.6e-59 232.6 252 53.6
FAN24G1875 Fragaria x ananassa HOM05D003590 ORTHO05D004290 4.6e-59 232.6 337 44.2
Nn1g09673 Nelumbo nucifera HOM05D003590 ORTHO05D004290 6.7e-58 228.8 297 47.8
Rhsim09G0012200 Rhododendron simsii HOM05D003590 ORTHO05D004290 1.5e-57 227.6 266 51.1
Lsat_1_v5_gn_9_37260 Lactuca sativa HOM05D003590 ORTHO05D004290 1.3e-56 224.6 238 52.9
SGA_v2.0_scaffold122G33190 Striga asiatica HOM05D003590 ORTHO05D004290 1.6e-56 224.2 313 44.7
Rhsim05G0167200 Rhododendron simsii HOM05D003590 ORTHO05D004290 6.3e-56 222.2 350 43.1
PSO782G1591 Papaver somniferum HOM05D003590 ORTHO05D004290 1.8e-55 220.7 225 54.7
Haze_01407 Corylus avellana HOM05D003590 ORTHO05D004290 4.1e-55 219.5 197 56.9
CSS0008581 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 6.9e-55 218.8 239 53.6
Sabra06G0097800 Salix brachista HOM05D003590 ORTHO05D004290 9.0e-55 218.4 309 44.3
PSO478G1249 Papaver somniferum HOM05D003590 ORTHO05D004290 1.2e-54 218.0 255 49.8
CSS0013807 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 7.6e-54 215.3 184 62.0
Lj1A579G41 Lonicera japonica HOM05D003590 ORTHO05D004290 2.2e-53 213.8 332 40.7
Oeu010166.1 Olea europaea HOM05D003590 ORTHO05D004290 2.2e-53 213.8 174 63.8
ECA246G2345 Erigeron canadensis HOM05D003590 ORTHO05D004290 2.9e-53 213.4 198 59.6
FvH4_6g53380 Fragaria vesca HOM05D003590 ORTHO05D004290 5.0e-53 212.6 203 54.7
PRCOL_00001168 Prasinoderma coloniale HOM05D003590 ORTHO05D004290 8.5e-53 211.8 225 52.9
FvH4_3g16870 Fragaria vesca HOM05D003590 ORTHO05D004290 1.4e-52 211.1 240 51.2
Cpa.g.sc9.339 Carica papaya HOM05D003590 ORTHO05D004290 1.2e-51 208.0 239 51.9
Hund21913 Selenicereus undatus HOM05D003590 ORTHO05D004290 3.6e-51 206.5 307 44.0
AagrBONN_evm.TU.Sc2ySwM_228.2375 Anthoceros agrestis HOM05D003590 ORTHO05D004290 1.3e-50 204.5 181 61.3
Hund07359 Selenicereus undatus HOM05D003590 ORTHO05D004290 2.3e-50 203.8 292 46.2
RcHm_v2.0_Chr5g0028111 Rosa chinensis HOM05D003590 ORTHO05D004290 5.7e-49 199.1 240 49.6
Sabra16G0098800 Salix brachista HOM05D003590 ORTHO05D004290 1.1e-47 194.9 306 42.8
FAN11G2382 Fragaria x ananassa HOM05D003590 ORTHO05D004290 4.4e-41 172.9 198 53.0
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 1.2e-38 164.9 262 42.0
SHI32795 Sapria himalayana HOM05D003590 ORTHO05D004290 1.0e-37 161.8 241 41.1
CBR_g16972 Chara braunii HOM05D003590 ORTHO05D004290 1.4e-36 157.9 243 37.9
Cre13.g583550 Chlamydomonas reinhardtii HOM05D003590 ORTHO05D004290 2.3e-34 150.6 238 39.1
Lsat_1_v5_gn_1_99340 Lactuca sativa HOM05D003590 ORTHO05D004290 1.5e-33 147.9 126 62.7
Cre11.g468050 Chlamydomonas reinhardtii HOM05D003590 ORTHO05D004290 1.8e-31 141.0 183 42.1
Dinv15392 Davidia involucrata HOM05D003590 ORTHO05D004290 2.6e-30 137.1 145 55.9
Cpa.g.sc123.34 Carica papaya HOM05D003590 ORTHO05D004290 5.9e-30 136.0 247 39.3
FAN16G0742 Fragaria x ananassa HOM05D003590 ORTHO05D004290 6.5e-29 132.5 198 45.5
vmacro19565 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 6.5e-29 132.5 135 57.0
TWI36G0235 Tripterygium wilfordii HOM05D003590 ORTHO05D004290 1.9e-28 131.0 135 55.6
vmacro19566 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 3.0e-26 123.6 117 55.6
Hma1.2p1_0831F.1_g225440 Hydrangea macrophylla HOM05D003590 ORTHO05D004290 4.0e-26 123.2 113 56.6
FAN19G0667 Fragaria x ananassa HOM05D003590 ORTHO05D004290 2.0e-25 120.9 170 45.9
ECA246G3922 Erigeron canadensis HOM05D003590 ORTHO05D004290 9.7e-25 118.6 228 38.2
MCO10G215 Micromonas commoda HOM05D003590 ORTHO05D004290 8.2e-24 115.5 257 33.9
Actinidia06797 Actinidia chinensis HOM05D003590 ORTHO05D004290 7.7e-22 109.0 135 48.9
Lj4g0013306 Lotus japonicus HOM05D003590 ORTHO05D004290 3.8e-21 106.7 94 56.4
MD15G1434500 Malus domestica HOM05D003590 ORTHO05D004290 2.5e-20 104.0 93 50.5
Ca_29066_v3 Cicer arietinum L. HOM05D003590 ORTHO05D147848 8.8e-18 95.5 243 27.6
QL11p022255 Quercus lobata HOM05D003590 ORTHO05D004290 2.0e-14 84.3 70 61.4
Pp3s46_350 Physcomitrium patens HOM05D002182 ORTHO05D004671 7.2e-12 75.9 184 31.0
AUR62000295 Chenopodium quinoa HOM05D003590 ORTHO05D004290 2.3e-10 70.9 86 47.7
FAN19G0592 Fragaria x ananassa HOM05D003590 ORTHO05D004290 2.0e-09 67.8 53 56.6
arahy.Tifrunner.gnm1.ann1.Z3LWFH Arachis hypogaea HOM05D000145 ORTHO05D000115 8.3e-08 62.4 79 50.6
AL2G21120 Arabidopsis lyrata HOM05D003590 ORTHO05D004290 2.0e-06 57.8 70 42.9


User provided reference genes

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