Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_14460 Physcomitrium patens HOM05D003627 ORTHO05D004307 3.0e-72 275.0 132 100.0
Mapoly0020s0108 Marchantia polymorpha HOM05D003627 ORTHO05D004307 8.2e-30 134.0 111 60.4
CBR_g8907 Chara braunii HOM05D003627 ORTHO05D004307 1.4e-29 133.3 112 59.8
HPP92_000819 Vanilla planifolia HOM05D003627 ORTHO05D004307 3.1e-29 132.1 104 66.3
TAR626G0665 Trochodendron aralioides HOM05D003627 ORTHO05D004307 4.1e-29 131.7 123 56.1
Lj7A717G55 Lonicera japonica HOM05D003627 ORTHO05D004307 2.0e-28 129.4 109 59.6
CDE10G0654 Ceratophyllum demersum HOM05D003627 ORTHO05D004307 2.6e-28 129.0 123 56.1
Pp3c25_1520 Physcomitrium patens HOM05D003627 ORTHO05D004307 2.6e-28 129.0 123 56.1
Nn2g11929 Nelumbo nucifera HOM05D003627 ORTHO05D004307 3.4e-28 128.6 123 54.5
Pp3c6_18020 Physcomitrium patens HOM05D003627 ORTHO05D004307 5.9e-28 127.9 123 55.3
Manes.16G119000 Manihot esculenta HOM05D003627 ORTHO05D004307 7.7e-28 127.5 109 58.7
Lsat_1_v5_gn_5_31481 Lactuca sativa HOM05D003627 ORTHO05D004307 1.0e-27 127.1 109 59.6
ATR0737G081 Amborella trichopoda HOM05D003627 ORTHO05D004307 1.3e-27 126.7 110 60.0
Thecc.09G148600 Theobroma cacao HOM05D003627 ORTHO05D004307 1.3e-27 126.7 119 55.5
CDE10G0960 Ceratophyllum demersum HOM05D003627 ORTHO05D004307 1.7e-27 126.3 123 55.3
AagrBONN_evm.TU.Sc2ySwM_344.1095 Anthoceros agrestis HOM05D003627 ORTHO05D004307 3.8e-27 125.2 122 52.5
Duzib150G1042 Durio zibethinus HOM05D003627 ORTHO05D004307 3.8e-27 125.2 119 52.9
MBI01_g13086_MAGBIO Magnolia biondii HOM05D003627 ORTHO05D004307 3.8e-27 125.2 123 54.5
Cpa.g.sc1755.1 Carica papaya HOM05D003627 ORTHO05D004307 6.5e-27 124.4 109 56.0
BcaC03g17902 Brassica carinata HOM05D003627 ORTHO05D004307 8.5e-27 124.0 119 55.5
A02p39740 Brassica napus HOM05D003627 ORTHO05D004307 8.5e-27 124.0 119 55.5
C02p59530 Brassica napus HOM05D003627 ORTHO05D004307 8.5e-27 124.0 119 55.5
Carub.0006s2330 Capsella rubella HOM05D003627 ORTHO05D004307 8.5e-27 124.0 119 52.9
FvH4_2g29690 Fragaria vesca HOM05D003627 ORTHO05D004307 8.5e-27 124.0 109 58.7
FAN15G2106 Fragaria x ananassa HOM05D003627 ORTHO05D004307 8.5e-27 124.0 109 58.7
FAN20G0596 Fragaria x ananassa HOM05D003627 ORTHO05D004307 8.5e-27 124.0 109 58.7
FAN24G2732 Fragaria x ananassa HOM05D003627 ORTHO05D004307 8.5e-27 124.0 109 58.7
FAN27G2400 Fragaria x ananassa HOM05D003627 ORTHO05D004307 8.5e-27 124.0 109 58.7
Medtr1g011880 Medicago truncatula HOM05D003627 ORTHO05D004307 8.5e-27 124.0 110 59.1
RcHm_v2.0_Chr6g0298671 Rosa chinensis HOM05D003627 ORTHO05D004307 8.5e-27 124.0 109 57.8
AL6G37230 Arabidopsis lyrata HOM05D003627 ORTHO05D004307 1.1e-26 123.6 119 53.8
MSTRG.11762 Avicennia marina HOM05D003627 ORTHO05D004307 1.1e-26 123.6 100 62.0
Gohir.A02G112400 Gossypium hirsutum HOM05D003627 ORTHO05D004307 1.1e-26 123.6 109 57.8
Oeu045199.1 Olea europaea HOM05D003627 ORTHO05D004307 1.4e-26 123.2 104 57.7
Eucgr.C01792 Eucalyptus grandis HOM05D003627 ORTHO05D004307 1.9e-26 122.9 119 52.1
PGR044G1161 Punica granatum HOM05D003627 ORTHO05D004307 1.9e-26 122.9 121 52.9
PGR044G1771 Punica granatum HOM05D003627 ORTHO05D004307 1.9e-26 122.9 121 53.7
Dinv11613 Davidia involucrata HOM05D003627 ORTHO05D004307 2.5e-26 122.5 110 57.3
Sed0001403 Sechium edule HOM05D003627 ORTHO05D004307 2.5e-26 122.5 119 52.9
CANSAT78G1909 Cannabis sativa HOM05D003627 ORTHO05D004307 3.2e-26 122.1 119 52.9
COL.COLO4_23986 Corchorus olitorius HOM05D003627 ORTHO05D004307 3.2e-26 122.1 104 59.6
Duzib168G1482 Durio zibethinus HOM05D003627 ORTHO05D004307 3.2e-26 122.1 119 52.1
Prupe.1G472700 Prunus persica HOM05D003627 ORTHO05D004307 3.2e-26 122.1 109 56.9
Atru.chr7.2370 Acer truncatum HOM05D003627 ORTHO05D004307 4.2e-26 121.7 119 52.9
Cc11_g01730 Coffea canephora HOM05D003627 ORTHO05D004307 4.2e-26 121.7 104 58.7
Gohir.A13G206900 Gossypium hirsutum HOM05D003627 ORTHO05D004307 4.2e-26 121.7 119 52.1
Gohir.D13G211500 Gossypium hirsutum HOM05D003627 ORTHO05D004307 4.2e-26 121.7 119 52.1
Gorai.013G241600 Gossypium raimondii HOM05D003627 ORTHO05D004307 4.2e-26 121.7 119 52.1
Hma1.2p1_0000F.1_g000840 Hydrangea macrophylla HOM05D003627 ORTHO05D004307 4.2e-26 121.7 121 53.7
MD08G1143000 Malus domestica HOM05D003627 ORTHO05D004307 4.2e-26 121.7 109 57.8
Manes.03G017600 Manihot esculenta HOM05D003627 ORTHO05D004307 4.2e-26 121.7 119 51.3
GSVIVG01035802001 Vitis vinifera HOM05D003627 ORTHO05D004307 4.2e-26 121.7 109 56.0
Actinidia15690 Actinidia chinensis HOM05D003627 ORTHO05D004307 5.5e-26 121.3 110 57.3
Glyma.17G208000 Glycine max HOM05D003627 ORTHO05D004307 5.5e-26 121.3 119 52.1
AT5G25450 Arabidopsis thaliana HOM05D003627 ORTHO05D004307 7.2e-26 120.9 119 52.9
Eucgr.C02813 Eucalyptus grandis HOM05D003627 ORTHO05D004307 7.2e-26 120.9 119 51.3
Thhalv10005137m.g Eutrema salsugineum HOM05D003627 ORTHO05D004307 7.2e-26 120.9 100 60.0
Peaxi162Scf00341g00821 Petunia axillaris HOM05D003627 ORTHO05D004307 7.2e-26 120.9 104 57.7
VMungo0647G0605 Vigna mungo HOM05D003627 ORTHO05D004307 7.2e-26 120.9 119 52.9
ClCG05G017090 Citrullus lanatus HOM05D003627 ORTHO05D004307 9.4e-26 120.6 119 51.3
Lalb_Chr08g0243901 Lupinus albus HOM05D003627 ORTHO05D004307 9.4e-26 120.6 119 51.3
Psat6g030080 Pisum sativum HOM05D003627 ORTHO05D004307 9.4e-26 120.6 109 56.9
C03p87330 Brassica napus HOM05D003627 ORTHO05D004307 1.2e-25 120.2 100 62.0
CSS0039202 Camellia sinensis var. sinensis HOM05D003627 ORTHO05D004307 1.2e-25 120.2 109 55.0
Cfa013184 Carpinus fangiana HOM05D003627 ORTHO05D004307 1.2e-25 120.2 119 51.3
Duzib187G0128 Durio zibethinus HOM05D003627 ORTHO05D004307 1.2e-25 120.2 119 52.9
Lj1g0024003 Lotus japonicus HOM05D003627 ORTHO05D004307 1.2e-25 120.2 119 51.3
Nitab4.5_0006827g0010 Nicotiana tabacum HOM05D003627 ORTHO05D004307 1.2e-25 120.2 104 57.7
Potri.006G250000 Populus trichocarpa HOM05D003627 ORTHO05D004307 1.2e-25 120.2 109 56.0
Thhalv10023759m.g Eutrema salsugineum HOM05D003627 ORTHO05D004307 1.6e-25 119.8 100 60.0
Sp4g05010 Schrenkiella parvula HOM05D003627 ORTHO05D004307 1.6e-25 119.8 100 60.0
SMO169G0058 Selaginella moellendorffii HOM05D003627 ORTHO05D004307 1.6e-25 119.8 111 56.8
TPR.G15658 Trifolium pratense HOM05D003627 ORTHO05D004307 1.6e-25 119.8 109 56.9
Ca_12928_v3 Cicer arietinum L. HOM05D003627 ORTHO05D004307 2.1e-25 119.4 110 56.4
Os07g0205000 Oryza sativa ssp. japonica HOM05D003627 ORTHO05D004307 2.1e-25 119.4 100 63.0
CiPaw.07G220400 Carya illinoinensis HOM05D003627 ORTHO05D004307 2.7e-25 119.0 119 51.3
Thhalv10026575m.g Eutrema salsugineum HOM05D003627 ORTHO05D004307 3.6e-25 118.6 100 60.0
Os03g0806900 Oryza sativa ssp. japonica HOM05D003627 ORTHO05D004307 3.6e-25 118.6 100 59.0
THA.LOC104803827 Tarenaya hassleriana HOM05D003627 ORTHO05D004307 3.6e-25 118.6 100 60.0
CARHR115730 Cardamine hirsuta HOM05D003627 ORTHO05D004307 4.7e-25 118.2 104 56.7
Lalb_Chr23g0268801 Lupinus albus HOM05D003627 ORTHO05D004307 4.7e-25 118.2 119 49.6
PSO170G3425 Papaver somniferum HOM05D003627 ORTHO05D004307 4.7e-25 118.2 109 55.0
PSO455G0147 Papaver somniferum HOM05D003627 ORTHO05D004307 4.7e-25 118.2 109 55.0
Potri.018G031400 Populus trichocarpa HOM05D003627 ORTHO05D004307 4.7e-25 118.2 109 54.1
Sabra18G0032500 Salix brachista HOM05D003627 ORTHO05D004307 4.7e-25 118.2 109 56.0
Zm00001eb094460 Zea mays HOM05D003627 ORTHO05D004307 4.7e-25 118.2 104 60.6
MSTRG.13989 Avicennia marina HOM05D003627 ORTHO05D004307 6.1e-25 117.9 100 60.0
CSS0004095 Camellia sinensis var. sinensis HOM05D003627 ORTHO05D004307 6.1e-25 117.9 109 56.0
CiPaw.08G013800 Carya illinoinensis HOM05D003627 ORTHO05D004307 6.1e-25 117.9 109 54.1
MCO05G573 Micromonas commoda HOM05D003627 ORTHO05D004307 6.1e-25 117.9 119 52.1
AT4G32470 Arabidopsis thaliana HOM05D003627 ORTHO05D004307 7.9e-25 117.5 100 60.0
BcaC01g01021 Brassica carinata HOM05D003627 ORTHO05D004307 7.9e-25 117.5 100 61.0
A08p18170 Brassica napus HOM05D003627 ORTHO05D004307 7.9e-25 117.5 100 61.0
BolC3t21033H Brassica oleracea HOM05D003627 ORTHO05D004307 7.9e-25 117.5 100 61.0
BraA08t33770Z Brassica rapa HOM05D003627 ORTHO05D004307 7.9e-25 117.5 100 61.0
CsaV3_3G046570 Cucumis sativus L. HOM05D003627 ORTHO05D004307 7.9e-25 117.5 109 54.1
Migut.A00309 Erythranthe guttata HOM05D003627 ORTHO05D004307 7.9e-25 117.5 100 59.0
Phvul.001G121500 Phaseolus vulgaris HOM05D003627 ORTHO05D004307 7.9e-25 117.5 109 55.0
Sp7g30260 Schrenkiella parvula HOM05D003627 ORTHO05D004307 7.9e-25 117.5 100 59.0
TAR636G0318 Trochodendron aralioides HOM05D003627 ORTHO05D004307 7.9e-25 117.5 113 54.9
CAN.G98.17 Capsicum annuum HOM05D003627 ORTHO05D004307 1.0e-24 117.1 100 59.0
MELO3C003682.2 Cucumis melo HOM05D003627 ORTHO05D004307 1.0e-24 117.1 109 54.1
HanXRQChr03g0062131 Helianthus annuus HOM05D003627 ORTHO05D004307 1.4e-24 116.7 109 56.9
Sed0003789 Sechium edule HOM05D003627 ORTHO05D004307 1.4e-24 116.7 119 50.4
SEGI_30503 Sequoiadendron giganteum HOM05D003627 ORTHO05D004307 1.4e-24 116.7 119 51.3
Zm00001eb212550 Zea mays HOM05D003627 ORTHO05D004307 1.4e-24 116.7 100 61.0
Aqoxy7G02033 Aquilegia oxysepala HOM05D003627 ORTHO05D004307 1.8e-24 116.3 92 63.0
CARHR240390 Cardamine hirsuta HOM05D003627 ORTHO05D004307 1.8e-24 116.3 100 59.0
AUR62024869 Chenopodium quinoa HOM05D003627 ORTHO05D004307 1.8e-24 116.3 100 61.0
BcaC09g52038 Brassica carinata HOM05D003627 ORTHO05D004307 2.3e-24 115.9 100 60.0
Carub.0007s0811 Capsella rubella HOM05D003627 ORTHO05D004307 2.3e-24 115.9 100 59.0
BcaB03g12747 Brassica carinata HOM05D003627 ORTHO05D004307 3.0e-24 115.5 119 51.3
A01p05900 Brassica napus HOM05D003627 ORTHO05D004307 3.0e-24 115.5 100 60.0
MD15G1119900 Malus domestica HOM05D003627 ORTHO05D004307 3.0e-24 115.5 109 54.1
Solyc08g067020.4 Solanum lycopersicum HOM05D003627 ORTHO05D004307 3.0e-24 115.5 100 58.0
Sopen08g020960 Solanum pennellii HOM05D003627 ORTHO05D004307 3.0e-24 115.5 100 58.0
HPP92_001612 Vanilla planifolia HOM05D003627 ORTHO05D004307 3.0e-24 115.5 104 58.7
unitig_32.g10929 Utricularia gibba HOM05D003627 ORTHO05D004307 3.9e-24 115.2 100 60.0
Migut.E01481 Erythranthe guttata HOM05D003627 ORTHO05D004307 5.1e-24 114.8 100 58.0
PGSC0003DMG400029087 Solanum tuberosum HOM05D003627 ORTHO05D004307 5.1e-24 114.8 100 58.0
unitig_748.g8200 Utricularia gibba HOM05D003627 ORTHO05D004307 5.1e-24 114.8 100 60.0
BraA01t00557Z Brassica rapa HOM05D003627 ORTHO05D004307 6.7e-24 114.4 100 59.0
C01p06520 Brassica napus HOM05D003627 ORTHO05D004307 1.5e-23 113.2 119 50.4
Glyma.14G126300 Glycine max HOM05D003627 ORTHO05D004307 1.5e-23 113.2 98 57.1
HanXRQChr05g0142301 Helianthus annuus HOM05D003627 ORTHO05D004307 1.5e-23 113.2 109 53.2
Zm00001eb061560 Zea mays HOM05D003627 ORTHO05D004307 1.5e-23 113.2 100 59.0
Lsat_1_v5_gn_8_57600 Lactuca sativa HOM05D003627 ORTHO05D004307 2.0e-23 112.8 109 52.3
ECA240G2460 Erigeron canadensis HOM05D003627 ORTHO05D004307 2.6e-23 112.5 109 52.3
HanXRQChr06g0179891 Helianthus annuus HOM05D003627 ORTHO05D004307 2.6e-23 112.5 109 52.3
Peaxi162Scf00361g00612 Petunia axillaris HOM05D003627 ORTHO05D004307 2.6e-23 112.5 123 50.4
BolC1t00646H Brassica oleracea HOM05D003627 ORTHO05D004307 3.3e-23 112.1 119 49.6
ECA236G1938 Erigeron canadensis HOM05D003627 ORTHO05D004307 4.4e-23 111.7 109 53.2
Lsat_1_v5_gn_7_42641 Lactuca sativa HOM05D003627 ORTHO05D004307 4.4e-23 111.7 109 52.3
Oeu031576.1 Olea europaea HOM05D003627 ORTHO05D004307 4.4e-23 111.7 96 57.3
AL7G19340 Arabidopsis lyrata HOM05D003627 ORTHO05D004307 1.7e-22 109.8 116 52.6
Nn8g39358 Nelumbo nucifera HOM05D003627 ORTHO05D004307 2.8e-22 109.0 109 52.3
Sc09g0008620 Simmondsia chinensis HOM05D003627 ORTHO05D004307 2.8e-22 109.0 94 59.6
SGA_v2.0_scaffold169G38619 Striga asiatica HOM05D003627 ORTHO05D004307 2.8e-22 109.0 120 51.7
TAR625G0096 Trochodendron aralioides HOM05D003627 ORTHO05D004307 1.8e-21 106.3 94 56.4
arahy.Tifrunner.gnm1.ann1.J127JW Arachis hypogaea HOM05D003627 ORTHO05D004307 9.1e-21 104.0 155 40.0
BraA02t08939Z Brassica rapa HOM05D003627 ORTHO05D004307 1.2e-20 103.6 102 52.0
Ciclev10009887m.g Citrus clementina HOM05D003627 ORTHO05D004307 4.5e-20 101.7 97 51.5
Actinidia14624 Actinidia chinensis HOM05D003627 ORTHO05D004307 5.9e-20 101.3 85 57.6
BolC2t12016H Brassica oleracea HOM05D003627 ORTHO05D004307 5.9e-20 101.3 97 53.6
Gorai.013G110700 Gossypium raimondii HOM05D003627 ORTHO05D004307 5.9e-20 101.3 97 51.5
QL02p023157 Quercus lobata HOM05D003627 ORTHO05D004307 7.7e-20 100.9 87 56.3
Sc06g0000590 Simmondsia chinensis HOM05D003627 ORTHO05D004307 7.7e-20 100.9 80 58.8
Gohir.D03G071300 Gossypium hirsutum HOM05D003627 ORTHO05D004307 1.0e-19 100.5 97 50.5
Hund03017 Selenicereus undatus HOM05D003627 ORTHO05D004307 2.2e-19 99.4 80 57.5
Actinidia13260 Actinidia chinensis HOM05D003627 ORTHO05D004307 3.8e-19 98.6 85 56.5
Gohir.1Z049369 Gossypium hirsutum HOM05D003627 ORTHO05D004307 5.0e-19 98.2 78 60.3
DCAR_003029 Daucus carota HOM05D003627 ORTHO05D004307 8.5e-19 97.4 123 45.5
Aa31LG2G19380 Aethionema arabicum HOM05D003627 ORTHO05D004307 1.1e-18 97.1 78 59.0
Sabra06G0195600 Salix brachista HOM05D003627 ORTHO05D004307 1.1e-18 97.1 88 53.4
Dinv30181 Davidia involucrata HOM05D003627 ORTHO05D004307 1.9e-18 96.3 85 54.1
QL02p087302 Quercus lobata HOM05D003627 ORTHO05D004307 2.5e-18 95.9 97 48.5
PRCOL_00006283 Prasinoderma coloniale HOM05D003627 ORTHO05D004307 9.4e-18 94.0 123 44.7
SalBow4G0188 Salvia bowleyana HOM05D003627 ORTHO05D004307 1.6e-17 93.2 76 59.2
SGA_v2.0_scaffold22G09938 Striga asiatica HOM05D003627 ORTHO05D004307 1.6e-17 93.2 100 52.0
TWI32G0136 Tripterygium wilfordii HOM05D003627 ORTHO05D004307 1.6e-17 93.2 100 53.0
SGA_v2.0_scaffold18G08283 Striga asiatica HOM05D003627 ORTHO05D004307 2.7e-17 92.4 172 36.6
TWI34G0954 Tripterygium wilfordii HOM05D003627 ORTHO05D004307 8.0e-17 90.9 100 50.0
Cre06.g262700 Chlamydomonas reinhardtii HOM05D003627 ORTHO05D004307 1.8e-16 89.7 107 47.7
arahy.Tifrunner.gnm1.ann1.8QVL0P Arachis hypogaea HOM05D003627 ORTHO05D004307 3.3e-15 85.5 157 35.7
HanXRQChr06g0182081 Helianthus annuus HOM05D003627 ORTHO05D004307 9.7e-15 84.0 82 53.7
Nn1g01248 Nelumbo nucifera HOM05D001793 ORTHO05D001938 3.7e-14 82.0 83 53.0
Rhsim02G0194100 Rhododendron simsii HOM05D003627 ORTHO05D004307 1.1e-13 80.5 70 54.3
Ah.10g026070 Amaranthus hybridus HOM05D003627 ORTHO05D004307 1.8e-13 79.7 68 52.9
Ah.10g026040 Amaranthus hybridus HOM05D003627 ORTHO05D004307 2.4e-13 79.3 202 30.2
vmacro05197 Vaccinium macrocarpon HOM05D003627 ORTHO05D004307 2.4e-13 79.3 78 50.0
Haze_21577 Corylus avellana HOM05D003627 ORTHO05D004307 4.1e-13 78.6 80 46.2
Oeu030075.1 Olea europaea HOM05D003627 ORTHO05D004307 2.0e-12 76.3 65 52.3
Os08g0246400 Oryza sativa ssp. japonica HOM05D003627 ORTHO05D004307 2.6e-12 75.9 88 51.1
Nitab4.5_0000010g0100 Nicotiana tabacum HOM05D003627 ORTHO05D004307 3.5e-12 75.5 61 59.0
SalBow8G5246 Salvia bowleyana HOM05D003627 ORTHO05D004307 4.5e-12 75.1 57 61.4
SalBow8G5369 Salvia bowleyana HOM05D003627 ORTHO05D004307 4.5e-12 75.1 57 61.4
MBI04_g38347_MAGBIO Magnolia biondii HOM05D003627 ORTHO05D004307 1.9e-10 69.7 71 49.3
CAN.G536.8 Capsicum annuum HOM05D003627 ORTHO05D001832 6.1e-09 64.7 90 43.3
SGA_v2.0_scaffold399G50806 Striga asiatica HOM05D005821 ORTHO05D006649 1.0e-08 63.9 67 47.8


User provided reference genes

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