Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 2.6e-130 468.8 246 100.0
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 6.2e-31 138.7 168 52.4
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 3.1e-30 136.3 146 55.5
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 7.6e-29 131.7 129 55.8
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 7.6e-29 131.7 178 47.8
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 1.3e-28 131.0 118 57.6
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 2.9e-28 129.8 118 56.8
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 3.8e-28 129.4 154 49.4
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 4.9e-28 129.0 118 56.8
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 4.9e-28 129.0 118 57.6
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 6.4e-28 128.6 118 55.9
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 6.4e-28 128.6 162 48.1
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 8.4e-28 128.3 118 57.6
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 8.4e-28 128.3 162 47.5
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 1.1e-27 127.9 118 54.2
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 1.1e-27 127.9 179 43.6
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 1.1e-27 127.9 141 49.6
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 1.4e-27 127.5 118 55.1
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 1.4e-27 127.5 118 54.2
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 1.4e-27 127.5 118 54.2
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 1.4e-27 127.5 118 55.9
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 2.4e-27 126.7 118 55.1
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 3.2e-27 126.3 128 52.3
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 4.2e-27 125.9 118 54.2
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 4.2e-27 125.9 159 46.5
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 4.2e-27 125.9 159 46.5
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 4.2e-27 125.9 118 54.2
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 4.2e-27 125.9 129 51.9
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 5.4e-27 125.6 118 54.2
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 5.4e-27 125.6 144 50.7
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 5.4e-27 125.6 118 55.1
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 5.4e-27 125.6 155 48.4
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 7.1e-27 125.2 118 55.1
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 7.1e-27 125.2 118 55.1
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 7.1e-27 125.2 179 43.6
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 9.3e-27 124.8 118 55.1
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 1.2e-26 124.4 177 43.5
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 1.6e-26 124.0 185 43.8
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 1.6e-26 124.0 178 43.3
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 1.6e-26 124.0 186 46.2
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 1.6e-26 124.0 118 54.2
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 2.1e-26 123.6 118 53.4
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 2.1e-26 123.6 118 54.2
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 2.1e-26 123.6 118 54.2
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 2.1e-26 123.6 118 53.4
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 2.7e-26 123.2 180 43.3
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 2.7e-26 123.2 144 49.3
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 3.5e-26 122.9 152 46.7
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 3.5e-26 122.9 179 44.1
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 4.6e-26 122.5 129 51.2
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 4.6e-26 122.5 118 54.2
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 4.6e-26 122.5 118 54.2
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 4.6e-26 122.5 118 54.2
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 4.6e-26 122.5 118 55.1
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 4.6e-26 122.5 195 44.1
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 4.6e-26 122.5 118 53.4
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 6.0e-26 122.1 204 40.7
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 6.0e-26 122.1 118 53.4
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 6.0e-26 122.1 129 53.5
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 6.0e-26 122.1 120 53.3
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 7.8e-26 121.7 158 44.9
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 7.8e-26 121.7 118 53.4
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 7.8e-26 121.7 118 53.4
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 7.8e-26 121.7 118 54.2
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 1.0e-25 121.3 118 55.1
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 1.0e-25 121.3 118 53.4
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 1.3e-25 120.9 118 52.5
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 1.3e-25 120.9 187 46.0
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 1.3e-25 120.9 197 43.1
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 1.3e-25 120.9 118 55.1
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 1.3e-25 120.9 129 51.9
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 1.3e-25 120.9 129 49.6
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 1.7e-25 120.6 152 46.1
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 1.7e-25 120.6 158 44.9
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 1.7e-25 120.6 152 46.1
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 1.7e-25 120.6 118 51.7
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 2.3e-25 120.2 118 53.4
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 3.0e-25 119.8 129 49.6
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 3.0e-25 119.8 118 53.4
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 3.9e-25 119.4 137 48.9
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 3.9e-25 119.4 192 42.2
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 3.9e-25 119.4 118 51.7
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 5.1e-25 119.0 118 52.5
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 5.1e-25 119.0 118 53.4
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 5.1e-25 119.0 183 45.4
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 6.6e-25 118.6 155 45.2
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 6.6e-25 118.6 115 54.8
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 1.1e-24 117.9 179 43.6
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 1.1e-24 117.9 152 45.4
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 1.1e-24 117.9 186 44.6
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 1.1e-24 117.9 184 45.1
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.1e-24 117.9 167 46.7
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 1.1e-24 117.9 126 50.8
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 1.5e-24 117.5 149 47.7
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 1.9e-24 117.1 118 53.4
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 2.5e-24 116.7 118 50.0
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 2.5e-24 116.7 138 47.1
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 2.5e-24 116.7 118 50.8
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 2.5e-24 116.7 138 49.3
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 2.5e-24 116.7 138 49.3
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 3.3e-24 116.3 126 50.0
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 4.3e-24 115.9 168 44.6
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 5.6e-24 115.5 118 51.7
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 7.3e-24 115.2 163 42.9
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 9.6e-24 114.8 118 55.1
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 9.6e-24 114.8 218 38.5
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 9.6e-24 114.8 126 49.2
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 1.3e-23 114.4 115 52.2
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 1.6e-23 114.0 194 38.7
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 1.6e-23 114.0 145 44.8
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 2.1e-23 113.6 118 50.8
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 2.1e-23 113.6 118 51.7
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 2.8e-23 113.2 118 49.2
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 4.8e-23 112.5 144 46.5
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 1.4e-22 110.9 115 50.4
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 2.4e-22 110.2 105 54.3
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 3.1e-22 109.8 172 41.3
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 4.0e-22 109.4 136 46.3
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 5.3e-22 109.0 146 47.3
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 3.4e-21 106.3 115 49.6
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 5.8e-21 105.5 143 44.1
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 5.8e-21 105.5 135 50.4
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 5.8e-21 105.5 118 53.4
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 9.9e-21 104.8 135 47.4
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 3.8e-20 102.8 184 41.3
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 3.8e-20 102.8 127 48.0
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 1.1e-19 101.3 117 45.3
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 2.4e-19 100.1 124 46.8
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 4.2e-19 99.4 130 47.7
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 4.2e-19 99.4 115 50.4
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 9.3e-19 98.2 114 47.4
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 3.5e-18 96.3 104 48.1
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 4.6e-18 95.9 123 44.7
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 8.7e-17 91.7 83 56.6
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.1e-16 91.3 137 43.1
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 1.5e-16 90.9 85 54.1
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 4.8e-15 85.9 127 43.3
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 8.1e-15 85.1 137 40.9
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 7.6e-13 78.6 127 40.9
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 2.2e-12 77.0 102 44.1
Os04g0665800 Oryza sativa ssp. japonica HOM05D004474 ORTHO05D005538 5.1e-09 65.9 76 52.6
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 3.7e-07 59.7 68 44.1


User provided reference genes

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