Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 9.7e-104 380.2 195 100.0
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 2.6e-96 355.5 195 92.3
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 1.4e-78 296.6 195 77.9
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 1.4e-73 280.0 198 70.7
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 1.4e-73 280.0 199 70.9
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 2.0e-72 276.2 197 69.5
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 2.6e-72 275.8 196 69.4
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 3.4e-72 275.4 194 72.2
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 7.5e-72 274.2 198 69.2
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 7.5e-72 274.2 198 69.2
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 9.8e-72 273.9 196 68.9
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 2.2e-71 272.7 198 67.7
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 2.8e-71 272.3 198 70.7
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 3.7e-71 271.9 192 69.8
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 4.9e-71 271.6 194 70.6
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 4.9e-71 271.6 202 66.8
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 8.3e-71 270.8 192 68.2
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 1.1e-70 270.4 199 71.4
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 1.1e-70 270.4 192 67.7
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 1.4e-70 270.0 198 66.7
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 1.4e-70 270.0 202 67.3
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 1.8e-70 269.6 198 66.7
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 1.8e-70 269.6 197 68.0
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 1.8e-70 269.6 198 67.2
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 1.8e-70 269.6 198 69.7
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 2.4e-70 269.2 193 68.9
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 2.4e-70 269.2 197 69.5
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 3.1e-70 268.9 196 68.9
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 3.1e-70 268.9 196 68.4
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 3.1e-70 268.9 198 69.7
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 3.1e-70 268.9 202 66.8
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 4.1e-70 268.5 197 70.6
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 5.4e-70 268.1 193 69.9
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 7.0e-70 267.7 192 69.3
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 7.0e-70 267.7 196 69.4
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 7.0e-70 267.7 192 66.7
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 9.2e-70 267.3 197 67.5
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 9.2e-70 267.3 204 66.2
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 1.2e-69 266.9 196 66.8
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 1.2e-69 266.9 196 66.8
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 1.2e-69 266.9 197 67.0
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 1.2e-69 266.9 193 68.9
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 1.6e-69 266.5 192 68.2
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 2.0e-69 266.2 192 67.2
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 2.7e-69 265.8 198 69.2
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 2.7e-69 265.8 198 67.7
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 2.7e-69 265.8 196 66.8
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 5.9e-69 264.6 196 66.3
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 7.8e-69 264.2 197 66.0
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 7.8e-69 264.2 198 66.2
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 7.8e-69 264.2 192 68.8
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.0e-68 263.8 196 69.4
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.0e-68 263.8 198 67.2
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 1.0e-68 263.8 199 67.3
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 1.0e-68 263.8 196 67.3
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.3e-68 263.5 194 71.6
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 1.3e-68 263.5 198 69.2
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 1.7e-68 263.1 196 67.3
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 1.7e-68 263.1 185 70.8
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 2.3e-68 262.7 192 68.8
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 2.3e-68 262.7 197 67.5
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 2.3e-68 262.7 197 67.5
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 2.9e-68 262.3 198 65.2
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 2.9e-68 262.3 198 65.2
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 5.0e-68 261.5 196 68.9
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 6.6e-68 261.2 198 68.2
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 6.6e-68 261.2 199 66.3
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 8.6e-68 260.8 198 64.6
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 8.6e-68 260.8 197 68.0
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 1.1e-67 260.4 199 67.8
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 1.5e-67 260.0 198 65.7
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 1.5e-67 260.0 197 66.0
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 1.5e-67 260.0 194 66.5
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 1.9e-67 259.6 192 66.1
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 1.9e-67 259.6 193 68.4
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 2.5e-67 259.2 196 64.3
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 2.5e-67 259.2 192 67.2
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 3.3e-67 258.8 189 69.3
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 3.3e-67 258.8 193 65.8
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 4.3e-67 258.5 192 66.7
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 4.3e-67 258.5 192 67.7
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 5.6e-67 258.1 196 66.3
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 5.6e-67 258.1 193 69.4
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 5.6e-67 258.1 193 67.9
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 5.6e-67 258.1 193 67.9
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 5.6e-67 258.1 192 68.2
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 7.3e-67 257.7 196 65.8
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 9.5e-67 257.3 193 66.3
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 1.2e-66 256.9 192 65.6
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 1.6e-66 256.5 196 64.3
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 1.6e-66 256.5 196 65.8
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 1.6e-66 256.5 196 65.8
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 2.1e-66 256.1 197 65.5
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 2.1e-66 256.1 196 64.3
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 2.1e-66 256.1 192 66.7
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 2.1e-66 256.1 193 68.4
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 2.1e-66 256.1 195 67.7
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 2.8e-66 255.8 192 66.7
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 2.8e-66 255.8 196 65.3
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 3.6e-66 255.4 197 65.0
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 3.6e-66 255.4 196 65.8
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 4.7e-66 255.0 192 65.6
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 8.0e-66 254.2 196 64.8
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 8.0e-66 254.2 196 65.3
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.4e-65 253.4 196 64.8
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 1.8e-65 253.1 193 64.2
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 1.8e-65 253.1 198 67.2
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 4.0e-65 251.9 196 64.8
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 8.9e-65 250.8 201 65.2
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 8.9e-65 250.8 183 67.8
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 1.2e-64 250.4 194 64.9
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 1.5e-64 250.0 203 64.0
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 2.6e-64 249.2 178 69.7
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.6e-64 249.2 205 63.9
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 2.6e-64 249.2 187 67.9
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 2.2e-63 246.1 186 66.1
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 2.9e-63 245.7 198 63.6
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 6.4e-63 244.6 212 59.9
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 6.4e-63 244.6 219 57.5
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 8.3e-63 244.2 192 63.5
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 1.4e-62 243.4 197 63.5
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 1.4e-62 243.4 193 62.7
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 5.4e-62 241.5 180 68.3
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 5.4e-62 241.5 212 60.4
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 7.8e-61 237.7 180 68.9
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 7.8e-61 237.7 224 59.4
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 7.8e-61 237.7 198 63.1
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 3.9e-60 235.3 173 67.6
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 5.0e-60 235.0 187 66.3
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 4.3e-59 231.9 204 61.3
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 5.6e-59 231.5 245 51.0
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.8e-58 229.2 174 66.7
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 3.6e-58 228.8 199 60.8
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 4.7e-58 228.4 190 61.6
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 1.1e-57 227.3 181 64.1
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 5.8e-56 221.5 196 59.7
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 2.2e-55 219.5 204 59.3
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 2.9e-55 219.2 210 57.1
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 7.0e-54 214.5 216 54.6
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 3.9e-52 208.8 231 51.9
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 2.8e-50 202.6 192 56.8
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 2.2e-47 193.0 118 83.1
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 2.4e-46 189.5 177 57.1
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 6.0e-45 184.9 200 53.5
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 1.7e-44 183.3 153 64.1
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 6.6e-44 181.4 115 77.4
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 3.0e-36 156.0 179 51.4
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 3.9e-36 155.6 101 75.2
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 1.2e-34 150.6 99 73.7
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 4.0e-33 145.6 101 72.3
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 2.0e-32 143.3 188 45.7
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 1.6e-26 123.6 95 63.2
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 2.1e-26 123.2 197 42.1
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.8e-25 120.2 68 83.8
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 4.0e-25 119.0 101 64.4
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 2.6e-24 116.3 186 40.3
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 1.4e-22 110.5 101 58.4
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 2.1e-21 106.7 197 36.5
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 2.5e-19 99.8 97 53.6
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 3.7e-18 95.9 78 57.7
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 6.2e-18 95.1 59 69.5
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 1.4e-17 94.0 192 36.5
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 2.6e-16 89.7 192 35.9
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 1.8e-12 77.0 54 63.0
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 3.0e-12 76.3 187 31.6
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 7.4e-11 71.6 49 71.4
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.6e-10 70.5 49 71.4
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 1.4e-09 67.4 48 60.4
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 4.0e-09 65.9 45 60.0
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 5.3e-09 65.5 72 55.6
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 5.5e-06 55.5 39 59.0
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 9.3e-06 54.7 70 47.1


User provided reference genes

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