Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_12120 Physcomitrium patens HOM05D005902 ORTHO05D007182 3.2e-153 545.0 271 100.0
Pp3c3_23430 Physcomitrium patens HOM05D005902 ORTHO05D007182 2.0e-131 472.6 271 88.2
ATR0598G055 Amborella trichopoda HOM05D005902 ORTHO05D007182 1.5e-62 243.8 188 56.9
AagrBONN_evm.TU.Sc2ySwM_344.787 Anthoceros agrestis HOM05D005902 ORTHO05D007182 5.7e-62 241.9 218 54.6
Mapoly0006s0187 Marchantia polymorpha HOM05D005902 ORTHO05D007182 9.8e-62 241.1 185 57.8
SMO278G0026 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 3.1e-60 236.1 185 54.1
Pp3c27_3020 Physcomitrium patens HOM05D005902 ORTHO05D007182 2.0e-59 233.4 186 56.5
Dinv28227 Davidia involucrata HOM05D005902 ORTHO05D007182 1.3e-58 230.7 183 57.4
QL02p060024 Quercus lobata HOM05D005902 ORTHO05D007182 5.0e-58 228.8 185 56.2
Atru.chr1.1947 Acer truncatum HOM05D005902 ORTHO05D007182 8.6e-58 228.0 183 56.8
Haze_14303 Corylus avellana HOM05D005902 ORTHO05D007182 8.6e-58 228.0 183 57.9
DCAR_010066 Daucus carota HOM05D005902 ORTHO05D007182 1.1e-57 227.6 183 55.7
Manes.05G062600 Manihot esculenta HOM05D005902 ORTHO05D007182 1.1e-57 227.6 183 54.6
Thecc.01G244600 Theobroma cacao HOM05D005902 ORTHO05D007182 1.9e-57 226.9 183 56.8
MBI13_g21692_MAGBIO Magnolia biondii HOM05D005902 ORTHO05D007182 2.5e-57 226.5 183 56.3
Pp3c16_2230 Physcomitrium patens HOM05D005902 ORTHO05D007182 3.3e-57 226.1 186 56.5
TWI53G1594 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 3.3e-57 226.1 183 56.8
arahy.Tifrunner.gnm1.ann1.00Q11I Arachis hypogaea HOM05D005902 ORTHO05D007182 4.2e-57 225.7 185 56.8
Oeu009432.1 Olea europaea HOM05D005902 ORTHO05D007182 4.2e-57 225.7 186 57.0
TWI74G1040 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 4.2e-57 225.7 183 55.7
CSS0022144 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 7.2e-57 224.9 183 55.2
Cfa007771 Carpinus fangiana HOM05D005902 ORTHO05D007182 7.2e-57 224.9 183 57.4
ClCG05G012140 Citrullus lanatus HOM05D005902 ORTHO05D007182 7.2e-57 224.9 183 55.7
PGR031G2550 Punica granatum HOM05D005902 ORTHO05D007182 7.2e-57 224.9 183 55.2
AUR62009143 Chenopodium quinoa HOM05D005902 ORTHO05D007182 9.5e-57 224.6 183 55.7
MD17G1258000 Malus domestica HOM05D005902 ORTHO05D007182 9.5e-57 224.6 183 56.3
arahy.Tifrunner.gnm1.ann1.YJU2T0 Arachis hypogaea HOM05D005902 ORTHO05D007182 1.2e-56 224.2 185 56.2
C02p21750 Brassica napus HOM05D005902 ORTHO05D007182 1.2e-56 224.2 185 56.2
Rhsim08G0020200 Rhododendron simsii HOM05D005902 ORTHO05D007182 1.2e-56 224.2 183 55.2
BcaB05g24153 Brassica carinata HOM05D005902 ORTHO05D007182 1.6e-56 223.8 185 56.2
Lsat_1_v5_gn_8_111480 Lactuca sativa HOM05D005902 ORTHO05D007182 1.6e-56 223.8 186 55.4
TPR.G9985 Trifolium pratense HOM05D005902 ORTHO05D007182 1.6e-56 223.8 185 56.8
Aqoxy3G04009 Aquilegia oxysepala HOM05D005902 ORTHO05D007182 2.1e-56 223.4 184 55.4
CiPaw.03G078000 Carya illinoinensis HOM05D005902 ORTHO05D007182 2.1e-56 223.4 183 56.8
Sabra04G0054600 Salix brachista HOM05D005902 ORTHO05D007182 2.1e-56 223.4 183 55.2
THA.LOC104822070 Tarenaya hassleriana HOM05D005902 ORTHO05D007182 2.1e-56 223.4 186 53.2
A02p13450 Brassica napus HOM05D005902 ORTHO05D007182 2.8e-56 223.0 185 55.7
BraA02t06403Z Brassica rapa HOM05D005902 ORTHO05D007182 2.8e-56 223.0 185 55.7
CAN.G1464.8 Capsicum annuum HOM05D005902 ORTHO05D007182 2.8e-56 223.0 183 55.7
MD09G1263000 Malus domestica HOM05D005902 ORTHO05D007182 2.8e-56 223.0 183 55.2
Nitab4.5_0017196g0010 Nicotiana tabacum HOM05D005902 ORTHO05D007182 2.8e-56 223.0 183 56.3
CsaV3_3G020300 Cucumis sativus L. HOM05D005902 ORTHO05D007182 3.6e-56 222.6 183 55.7
Nn3g18467 Nelumbo nucifera HOM05D005902 ORTHO05D007182 3.6e-56 222.6 183 55.2
PSO063G5475 Papaver somniferum HOM05D005902 ORTHO05D007182 3.6e-56 222.6 183 55.2
Hma1.2p1_0158F.1_g069840 Hydrangea macrophylla HOM05D005902 ORTHO05D007182 4.7e-56 222.2 183 54.6
PSO782G1752 Papaver somniferum HOM05D005902 ORTHO05D007182 4.7e-56 222.2 183 55.2
Potri.004G082100 Populus trichocarpa HOM05D005902 ORTHO05D007182 4.7e-56 222.2 183 54.6
BraA07t30938Z Brassica rapa HOM05D005902 ORTHO05D007182 6.1e-56 221.9 185 55.1
Cc07_g13000 Coffea canephora HOM05D005902 ORTHO05D007182 6.1e-56 221.9 183 54.1
MELO3C023753.2 Cucumis melo HOM05D005902 ORTHO05D007182 8.0e-56 221.5 183 55.2
Sed0000187 Sechium edule HOM05D005902 ORTHO05D007182 8.0e-56 221.5 183 56.3
vmacro18518 Vaccinium macrocarpon HOM05D005902 ORTHO05D007182 8.0e-56 221.5 183 54.1
Peaxi162Scf00525g00623 Petunia axillaris HOM05D005902 ORTHO05D007182 1.0e-55 221.1 183 55.7
Actinidia35717 Actinidia chinensis HOM05D005902 ORTHO05D007182 1.4e-55 220.7 183 55.2
MSTRG.15644 Avicennia marina HOM05D005902 ORTHO05D007182 1.4e-55 220.7 186 57.0
AUR62039116 Chenopodium quinoa HOM05D005902 ORTHO05D007182 1.4e-55 220.7 183 54.6
Migut.K01111 Erythranthe guttata HOM05D005902 ORTHO05D007182 1.4e-55 220.7 185 57.3
Lalb_Chr10g0104081 Lupinus albus HOM05D005902 ORTHO05D007182 1.4e-55 220.7 188 55.9
GSVIVG01026316001 Vitis vinifera HOM05D005902 ORTHO05D007182 1.8e-55 220.3 185 55.7
Cpa.g.sc178.4 Carica papaya HOM05D005902 ORTHO05D007182 2.3e-55 219.9 183 54.6
PGSC0003DMG400023318 Solanum tuberosum HOM05D005902 ORTHO05D007182 2.3e-55 219.9 183 55.2
TAR371G0118 Trochodendron aralioides HOM05D005902 ORTHO05D007182 2.3e-55 219.9 183 54.1
Lj2A514T43 Lonicera japonica HOM05D005902 ORTHO05D007182 3.0e-55 219.5 183 55.2
Solyc05g056560.3 Solanum lycopersicum HOM05D005902 ORTHO05D007182 3.0e-55 219.5 183 54.6
Sopen05g034960 Solanum pennellii HOM05D005902 ORTHO05D007182 3.0e-55 219.5 183 54.6
C06p39370 Brassica napus HOM05D005902 ORTHO05D007182 4.0e-55 219.2 185 54.6
Ciclev10005984m.g Citrus clementina HOM05D005902 ORTHO05D007182 4.0e-55 219.2 183 54.1
A07p33100 Brassica napus HOM05D005902 ORTHO05D007182 5.2e-55 218.8 185 54.6
Medtr5g077260 Medicago truncatula HOM05D005902 ORTHO05D007182 5.2e-55 218.8 185 55.7
RcHm_v2.0_Chr3g0493321 Rosa chinensis HOM05D005902 ORTHO05D007182 5.2e-55 218.8 183 55.2
Hund03335 Selenicereus undatus HOM05D005902 ORTHO05D007182 5.2e-55 218.8 184 54.3
FAN19G0020 Fragaria x ananassa HOM05D005902 ORTHO05D007182 6.8e-55 218.4 183 54.6
FAN26G1601 Fragaria x ananassa HOM05D005902 ORTHO05D007182 6.8e-55 218.4 183 54.6
Nitab4.5_0000905g0130 Nicotiana tabacum HOM05D005902 ORTHO05D007182 6.8e-55 218.4 183 55.2
BcaC08g46080 Brassica carinata HOM05D005902 ORTHO05D007182 8.9e-55 218.0 185 54.1
BolC6t39030H Brassica oleracea HOM05D005902 ORTHO05D007182 8.9e-55 218.0 185 54.1
Aa31LG2G2820 Aethionema arabicum HOM05D005902 ORTHO05D007182 1.2e-54 217.6 185 54.6
BcaB03g15295 Brassica carinata HOM05D005902 ORTHO05D007182 1.5e-54 217.2 183 55.2
Carub.0002s1207 Capsella rubella HOM05D005902 ORTHO05D007182 1.5e-54 217.2 185 54.6
Oeu048966.1 Olea europaea HOM05D005902 ORTHO05D007182 1.5e-54 217.2 186 54.3
Sc09g0004530 Simmondsia chinensis HOM05D005902 ORTHO05D007182 1.5e-54 217.2 186 54.8
SalBow5G2060 Salvia bowleyana HOM05D005902 ORTHO05D007182 2.0e-54 216.9 184 55.4
MSTRG.3687 Avicennia marina HOM05D005902 ORTHO05D007182 2.6e-54 216.5 185 56.2
Duzib187G0521 Durio zibethinus HOM05D005902 ORTHO05D007182 2.6e-54 216.5 183 54.1
FAN28G1805 Fragaria x ananassa HOM05D005902 ORTHO05D007182 2.6e-54 216.5 183 54.1
LjContig00141g0001362 Lotus japonicus HOM05D005902 ORTHO05D007182 2.6e-54 216.5 186 54.8
Psat2g044640 Pisum sativum HOM05D005902 ORTHO05D007182 2.6e-54 216.5 185 55.1
AT1G66080 Arabidopsis thaliana HOM05D005902 ORTHO05D007182 3.4e-54 216.1 185 54.1
Ca_05775_v3 Cicer arietinum L. HOM05D005902 ORTHO05D007182 3.4e-54 216.1 185 53.5
Prupe.3G160700 Prunus persica HOM05D005902 ORTHO05D007182 3.4e-54 216.1 183 54.6
SGA_v2.0_scaffold45G17133 Striga asiatica HOM05D005902 ORTHO05D007182 3.4e-54 216.1 185 55.1
ECA240G4510 Erigeron canadensis HOM05D005902 ORTHO05D007182 4.4e-54 215.7 188 53.2
AL2G23690 Arabidopsis lyrata HOM05D005902 ORTHO05D007182 5.7e-54 215.3 185 54.1
Thhalv10019182m.g Eutrema salsugineum HOM05D005902 ORTHO05D007182 5.7e-54 215.3 185 54.6
HanXRQChr09g0259821 Helianthus annuus HOM05D005902 ORTHO05D007182 5.7e-54 215.3 186 53.8
Lalb_Chr17g0345911 Lupinus albus HOM05D005902 ORTHO05D007182 5.7e-54 215.3 187 54.0
CARHR058040 Cardamine hirsuta HOM05D005902 ORTHO05D007182 7.5e-54 214.9 185 54.1
CANSAT80G0886 Cannabis sativa HOM05D005902 ORTHO05D007182 9.8e-54 214.5 187 51.9
CDE05G2622 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 9.8e-54 214.5 183 53.0
Gorai.008G001800 Gossypium raimondii HOM05D005902 ORTHO05D007182 9.8e-54 214.5 186 52.2
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 9.8e-54 214.5 183 53.0
Glyma.14G211800 Glycine max HOM05D005902 ORTHO05D007182 1.3e-53 214.2 184 53.8
Phvul.008G239100 Phaseolus vulgaris HOM05D005902 ORTHO05D007182 1.3e-53 214.2 184 54.3
Gohir.A12G002700 Gossypium hirsutum HOM05D005902 ORTHO05D007182 1.7e-53 213.8 190 51.1
Gohir.D12G002400 Gossypium hirsutum HOM05D005902 ORTHO05D007182 1.7e-53 213.8 183 53.0
VMungo0647G1816 Vigna mungo HOM05D005902 ORTHO05D007182 2.2e-53 213.4 184 53.3
Duzib264G0381 Durio zibethinus HOM05D005902 ORTHO05D007182 2.8e-53 213.0 183 53.0
Glyma.02G242000 Glycine max HOM05D005902 ORTHO05D007182 6.3e-53 211.8 184 52.7
CDE05G1035 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 1.1e-52 211.1 183 53.0
Mapoly0001s0397 Marchantia polymorpha HOM05D005902 ORTHO05D007182 1.4e-52 210.7 278 43.2
EL10Ac2g03874 Beta vulgaris HOM05D005902 ORTHO05D007182 1.8e-52 210.3 184 53.3
Sed0027099 Sechium edule HOM05D005902 ORTHO05D007182 2.4e-52 209.9 183 54.1
SMO367G0342 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 4.1e-52 209.1 247 42.1
unitig_748.g7250 Utricularia gibba HOM05D005902 ORTHO05D007182 5.4e-52 208.8 185 54.6
COL.COLO4_08161 Corchorus olitorius HOM05D005902 ORTHO05D007182 1.7e-50 203.8 172 55.8
Sp5g21150 Schrenkiella parvula HOM05D005902 ORTHO05D007182 1.1e-44 184.5 155 56.1
CBR_g54208 Chara braunii HOM05D005902 ORTHO05D007182 4.1e-44 182.6 188 46.8
CSS0046217 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 3.3e-41 172.9 147 53.7
TAR629G3091 Trochodendron aralioides HOM05D005902 ORTHO05D007182 1.6e-40 170.6 150 52.7
Ah.10g034300 Amaranthus hybridus HOM05D005902 ORTHO05D007182 2.1e-40 170.2 162 50.6
CBR_g54207 Chara braunii HOM05D005902 ORTHO05D007182 9.8e-38 161.4 197 39.1
FvH4_1g28840 Fragaria vesca HOM05D005902 ORTHO05D007182 1.4e-36 157.5 140 53.6
HPP92_002287 Vanilla planifolia HOM05D005902 ORTHO05D007182 2.3e-31 140.2 143 50.3
CSS0023311 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 2.9e-29 133.3 179 39.7
Os03g0237500 Oryza sativa ssp. japonica HOM05D005902 ORTHO05D007182 3.3e-25 119.8 185 38.4
Zm00001eb010060 Zea mays HOM05D005902 ORTHO05D007182 7.3e-25 118.6 188 36.7
MD03G1052600 Malus domestica HOM05D005902 ORTHO05D007182 1.3e-21 107.8 91 54.9
BcaC03g14730 Brassica carinata HOM05D005902 ORTHO05D007182 6.4e-21 105.5 89 52.8
Cre16.g691215 Chlamydomonas reinhardtii HOM05D005902 ORTHO05D007182 1.4e-20 104.4 185 30.3
MCO11G231 Micromonas commoda HOM05D005902 ORTHO05D007182 1.4e-20 104.4 193 31.1
MD01G1041600 Malus domestica HOM05D005902 ORTHO05D007182 6.9e-15 85.5 79 50.6
MD16G1261800 Malus domestica HOM05D005902 ORTHO05D007182 2.1e-08 63.9 47 57.4
PRCOL_00005463 Prasinoderma coloniale HOM05D005902 ORTHO05D007182 3.6e-08 63.2 155 27.7


User provided reference genes

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