Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 0.0e+00 1196.0 603 100.0
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 2.1e-234 815.8 591 70.6
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 7.6e-232 807.4 496 83.5
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 3.3e-203 712.2 618 59.5
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 2.8e-202 709.1 496 69.0
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 7.2e-198 694.5 517 65.8
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 6.1e-197 691.4 571 62.2
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 7.9e-197 691.0 523 66.5
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 1.0e-196 690.6 498 68.1
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 1.0e-196 690.6 496 68.5
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 1.0e-196 690.6 507 67.9
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 2.3e-196 689.5 538 63.6
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 1.5e-195 686.8 565 61.9
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 1.5e-195 686.8 495 69.1
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 2.6e-195 686.0 547 62.2
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 2.6e-195 686.0 509 67.0
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 3.3e-195 685.6 559 63.9
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 7.4e-195 684.5 548 62.8
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 9.7e-195 684.1 577 60.5
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 9.7e-195 684.1 548 62.6
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 1.7e-194 683.3 503 67.0
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 2.2e-194 682.9 551 63.7
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 3.7e-194 682.2 503 66.8
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 6.3e-194 681.4 539 63.1
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 6.3e-194 681.4 539 63.1
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 6.3e-194 681.4 539 63.1
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 6.3e-194 681.4 539 63.1
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 1.1e-193 680.6 514 65.2
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 1.1e-193 680.6 497 67.0
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 1.8e-193 679.9 555 62.3
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 3.1e-193 679.1 498 67.1
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 3.1e-193 679.1 516 64.3
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 4.1e-193 678.7 498 66.3
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 4.1e-193 678.7 539 62.7
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 5.3e-193 678.3 507 65.3
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 7.0e-193 677.9 512 65.4
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 7.0e-193 677.9 554 62.3
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 9.1e-193 677.6 562 61.0
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 9.1e-193 677.6 562 61.0
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 9.1e-193 677.6 549 62.3
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 9.1e-193 677.6 517 64.2
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 1.2e-192 677.2 498 67.1
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 1.2e-192 677.2 595 59.0
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 1.5e-192 676.8 497 67.2
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 1.5e-192 676.8 575 60.9
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 2.0e-192 676.4 497 65.6
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 3.5e-192 675.6 538 62.6
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 3.5e-192 675.6 498 66.3
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 4.5e-192 675.2 599 58.4
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 5.9e-192 674.9 576 59.9
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 5.9e-192 674.9 503 65.6
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 7.7e-192 674.5 599 58.3
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 7.7e-192 674.5 556 62.4
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 7.7e-192 674.5 567 60.5
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 1.3e-191 673.7 595 59.0
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 1.3e-191 673.7 541 62.5
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 1.7e-191 673.3 514 65.4
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 1.7e-191 673.3 559 61.2
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 1.7e-191 673.3 561 60.4
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 1.7e-191 673.3 506 65.8
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 2.2e-191 672.9 497 65.6
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 2.2e-191 672.9 497 65.6
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 2.2e-191 672.9 498 65.9
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 2.2e-191 672.9 513 64.9
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 2.9e-191 672.5 497 66.6
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 2.9e-191 672.5 563 61.1
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 3.8e-191 672.2 551 61.2
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 6.5e-191 671.4 508 65.0
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 8.5e-191 671.0 509 64.2
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 1.9e-190 669.8 556 61.3
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 2.5e-190 669.5 561 61.1
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 2.5e-190 669.5 550 60.9
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 2.5e-190 669.5 497 66.2
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 4.2e-190 668.7 495 66.3
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 4.2e-190 668.7 497 66.0
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 5.5e-190 668.3 516 63.8
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 7.2e-190 667.9 526 62.4
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 1.2e-189 667.2 497 66.2
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 1.6e-189 666.8 532 61.8
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 2.7e-189 666.0 537 61.6
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 1.0e-188 664.1 498 65.1
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 1.8e-188 663.3 497 66.0
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.2e-188 661.8 574 59.1
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 6.7e-188 661.4 523 63.9
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 6.7e-188 661.4 496 65.7
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 8.8e-188 661.0 563 60.4
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 3.3e-187 659.1 516 63.4
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 2.2e-186 656.4 493 65.5
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 2.8e-186 656.0 527 61.7
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 3.7e-186 655.6 508 63.4
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 1.8e-185 653.3 458 70.3
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 2.4e-185 652.9 493 65.1
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 4.1e-185 652.1 508 63.0
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 4.1e-185 652.1 608 56.2
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 7.0e-185 651.4 551 61.7
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 9.1e-185 651.0 498 63.5
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.2e-184 650.6 526 62.2
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 7.7e-184 647.9 526 62.0
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 2.2e-183 646.4 565 58.1
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 2.9e-183 646.0 498 64.3
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 2.5e-182 642.9 475 66.7
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 9.4e-182 641.0 512 62.1
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 5.2e-180 635.2 548 59.1
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 2.0e-179 633.3 520 61.2
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 2.6e-179 632.9 543 60.0
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 5.7e-179 631.7 530 59.2
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 7.5e-179 631.3 571 56.2
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 4.8e-178 628.6 493 61.3
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 4.1e-177 625.5 482 63.1
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 2.7e-173 612.8 558 57.2
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 2.9e-167 592.8 420 68.1
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 3.8e-167 592.4 469 63.3
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 1.4e-164 583.9 430 65.6
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 8.3e-162 574.7 457 63.7
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 5.6e-158 562.0 507 58.4
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.6e-152 543.9 493 57.4
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 6.0e-152 542.0 457 58.0
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 1.3e-151 540.8 425 63.3
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 3.9e-151 539.3 396 65.4
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 5.0e-151 538.9 332 79.2
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 2.1e-144 516.9 554 51.1
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 3.5e-144 516.2 559 52.1
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 1.5e-142 510.8 500 55.6
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 1.5e-131 474.2 334 68.9
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 1.7e-130 470.7 358 67.0
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 6.4e-130 468.8 512 48.6
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 4.2e-129 466.1 508 50.6
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 6.0e-128 462.2 497 48.7
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 7.3e-126 455.3 509 47.3
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 6.2e-125 452.2 509 47.3
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.4e-124 451.1 506 48.0
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 6.6e-119 432.2 493 48.7
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 3.0e-111 406.8 507 46.5
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 1.1e-110 404.8 545 41.3
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.6e-104 384.4 506 42.9
MCO04G241 Micromonas commoda HOM05D001920 ORTHO05D005408 4.1e-100 369.8 438 43.4
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 8.8e-79 298.9 445 41.6
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 2.7e-72 277.3 570 36.1
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.4e-63 248.4 347 41.5
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 6.5e-58 229.6 172 67.4
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 1.0e-50 205.7 256 44.1
SEGI_36171 Sequoiadendron giganteum HOM05D001920 ORTHO05D000001 5.7e-46 189.9 131 69.5
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 1.5e-41 175.3 158 54.4
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.4e-36 158.7 398 32.7
MSTRG.25967 Avicennia marina HOM05D001920 ORTHO05D005408 1.3e-34 152.1 106 71.7
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 1.2e-30 139.0 115 60.0
Lj7A264G15 Lonicera japonica HOM05D001920 ORTHO05D005408 5.4e-28 130.2 116 57.8
TPR.G36194 Trifolium pratense HOM05D001920 ORTHO05D005408 1.2e-22 112.5 79 65.8
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 1.5e-22 112.1 106 55.7
BcaNung02635 Brassica carinata HOM05D001920 ORTHO05D005408 8.4e-21 106.3 80 63.8
Hma1.2p1_0196F.1_g084820 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 2.7e-19 101.3 78 62.8
Zm00001eb014540 Zea mays HOM05D000282 ORTHO05D000272 5.6e-17 93.6 88 55.7
Eucgr.L03492 Eucalyptus grandis HOM05D001920 ORTHO05D005408 6.2e-16 90.1 83 51.8
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 8.1e-16 89.7 71 56.3
BcaC05g26027 Brassica carinata HOM05D001920 ORTHO05D024365 5.8e-14 83.6 69 59.4
TPR.G36118 Trifolium pratense HOM05D001920 ORTHO05D005408 1.3e-13 82.4 54 70.4
TPR.G748 Trifolium pratense HOM05D001920 ORTHO05D005408 2.4e-12 78.2 63 63.5
SGA_v2.0_scaffold26G11215 Striga asiatica HOM05D001920 ORTHO05D024365 5.4e-12 77.0 106 48.1
C05p19930 Brassica napus HOM05D001920 ORTHO05D024365 7.8e-11 73.2 58 62.1
MBI17_g36954_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D012920 5.1e-10 70.5 52 65.4
ECA232G0588 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.9e-09 68.6 49 63.3
BolC5t30691H Brassica oleracea HOM05D001920 ORTHO05D024365 7.3e-09 66.6 43 72.1
C06p01410 Brassica napus HOM05D001920 ORTHO05D024365 2.1e-08 65.1 77 49.4
ATR0009G024 Amborella trichopoda HOM05D001920 ORTHO05D005408 3.1e-07 61.2 56 44.6
Cfa024452 Carpinus fangiana HOM05D001920 ORTHO05D123033 4.5e-06 57.4 120 31.7
Lsat_1_v5_gn_6_51140 Lactuca sativa HOM05D001920 ORTHO05D233273 5.8e-06 57.0 52 51.9


User provided reference genes

Program Settings