Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.6e-291 1005.4 513 100.0
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.3e-189 666.0 497 69.4
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 7.5e-188 661.0 497 68.0
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.3e-119 432.6 494 48.6
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 2.6e-23 114.4 224 33.5
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 4.9e-22 110.2 247 31.6
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.9e-22 110.2 289 32.5
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 8.4e-22 109.4 221 33.0
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 3.2e-21 107.5 224 35.3
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.2e-21 107.1 225 36.0
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 6.0e-20 103.2 191 34.0
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 7.9e-20 102.8 222 33.3
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 1.8e-19 101.7 302 30.1
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 5.1e-19 100.1 287 27.5
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 6.7e-19 99.8 192 35.9
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 6.7e-19 99.8 284 29.6
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 1.1e-18 99.0 191 33.0
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 1.5e-18 98.6 191 34.0
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 1.9e-18 98.2 296 30.1
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 1.9e-18 98.2 296 30.1
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 2.5e-18 97.8 188 34.6
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 2.5e-18 97.8 191 32.5
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 3.3e-18 97.4 286 26.9
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 5.6e-18 96.7 188 34.6
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 5.6e-18 96.7 223 30.5
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 5.6e-18 96.7 227 31.3
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 7.4e-18 96.3 190 32.1
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 9.6e-18 95.9 188 34.6
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 9.6e-18 95.9 191 33.0
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 9.6e-18 95.9 187 32.6
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 9.6e-18 95.9 190 33.2
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 1.3e-17 95.5 190 33.2
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.3e-17 95.5 225 31.1
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 1.3e-17 95.5 296 29.7
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 1.3e-17 95.5 191 33.0
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 1.3e-17 95.5 187 32.6
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 1.6e-17 95.1 284 29.6
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 1.6e-17 95.1 267 30.3
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 1.6e-17 95.1 461 23.4
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 2.8e-17 94.4 291 29.6
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 2.8e-17 94.4 291 29.6
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 2.8e-17 94.4 190 33.7
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 2.8e-17 94.4 190 33.7
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 2.8e-17 94.4 191 31.9
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 3.6e-17 94.0 190 32.6
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 3.6e-17 94.0 190 32.6
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 3.6e-17 94.0 191 31.9
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 3.6e-17 94.0 283 26.9
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 4.8e-17 93.6 190 32.6
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 4.8e-17 93.6 284 29.2
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 4.8e-17 93.6 286 27.6
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 4.8e-17 93.6 190 31.6
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 1.1e-16 92.4 191 31.4
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 1.1e-16 92.4 191 32.5
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 1.4e-16 92.0 286 27.3
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 1.4e-16 92.0 187 32.1
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 1.8e-16 91.7 187 33.2
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 2.4e-16 91.3 187 31.0
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 2.4e-16 91.3 190 31.6
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.4e-16 91.3 187 31.6
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 2.4e-16 91.3 185 33.0
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 3.1e-16 90.9 187 31.0
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 3.1e-16 90.9 191 31.9
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 4.0e-16 90.5 217 31.8
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 4.0e-16 90.5 187 32.6
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 4.0e-16 90.5 190 31.6
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 5.3e-16 90.1 187 31.6
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 6.9e-16 89.7 217 31.8
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 6.9e-16 89.7 286 26.9
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 6.9e-16 89.7 190 31.6
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 9.0e-16 89.4 283 26.1
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 9.0e-16 89.4 190 31.1
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 1.2e-15 89.0 187 30.5
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.2e-15 89.0 188 31.9
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 1.2e-15 89.0 187 31.0
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 1.2e-15 89.0 187 32.1
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 1.5e-15 88.6 187 31.0
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 1.5e-15 88.6 190 31.6
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 1.5e-15 88.6 191 31.4
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 1.5e-15 88.6 270 26.3
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 1.5e-15 88.6 270 25.9
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 1.5e-15 88.6 187 31.0
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 2.0e-15 88.2 187 31.0
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 2.0e-15 88.2 187 31.6
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 2.0e-15 88.2 187 32.1
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 2.6e-15 87.8 187 32.1
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 2.6e-15 87.8 190 31.6
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 2.6e-15 87.8 191 30.9
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 2.6e-15 87.8 153 37.9
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 3.4e-15 87.4 187 31.0
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 3.4e-15 87.4 459 22.7
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 3.4e-15 87.4 191 30.9
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 3.4e-15 87.4 189 31.2
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 3.4e-15 87.4 185 32.4
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 3.4e-15 87.4 190 30.5
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 3.4e-15 87.4 190 30.5
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 5.8e-15 86.7 192 32.3
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 5.8e-15 86.7 187 31.6
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 7.6e-15 86.3 328 27.7
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 7.6e-15 86.3 217 30.9
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 7.6e-15 86.3 217 31.3
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 7.6e-15 86.3 189 32.3
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 7.6e-15 86.3 190 32.1
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 9.9e-15 85.9 190 30.0
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 1.3e-14 85.5 251 29.1
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 1.3e-14 85.5 187 30.5
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 1.3e-14 85.5 217 30.9
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 1.3e-14 85.5 190 30.5
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.3e-14 85.5 190 30.5
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 1.3e-14 85.5 217 29.5
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.3e-14 85.5 187 29.9
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 1.7e-14 85.1 202 30.7
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.7e-14 85.1 190 30.5
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.7e-14 85.1 190 30.5
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 2.2e-14 84.7 251 30.3
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 2.2e-14 84.7 147 32.7
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 2.2e-14 84.7 187 29.4
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 2.2e-14 84.7 187 29.4
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 2.9e-14 84.3 144 34.7
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 2.9e-14 84.3 187 30.5
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 3.8e-14 84.0 251 30.3
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 3.8e-14 84.0 487 22.6
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 3.8e-14 84.0 190 31.6
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 3.8e-14 84.0 217 30.9
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 3.8e-14 84.0 190 30.0
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 4.9e-14 83.6 213 30.5
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 4.9e-14 83.6 190 29.5
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 4.9e-14 83.6 190 27.9
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 4.9e-14 83.6 190 31.1
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 6.4e-14 83.2 252 29.8
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 6.4e-14 83.2 252 29.8
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 6.4e-14 83.2 190 30.0
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 6.4e-14 83.2 185 33.0
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 8.4e-14 82.8 251 29.5
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 2.4e-13 81.3 190 28.9
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 2.4e-13 81.3 229 30.6
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 2.4e-13 81.3 191 28.3
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 3.2e-13 80.9 119 39.5
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 4.2e-13 80.5 136 37.5
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 9.3e-13 79.3 229 30.1
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 9.3e-13 79.3 187 28.9
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 1.2e-12 79.0 187 28.3
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 1.6e-12 78.6 119 38.7
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 3.5e-12 77.4 188 29.3
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 4.6e-12 77.0 138 36.2
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 4.6e-12 77.0 86 44.2
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 6.0e-12 76.6 188 30.3
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 1.0e-11 75.9 188 28.7
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 1.3e-11 75.5 188 27.7
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 1.8e-11 75.1 285 25.3
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 1.8e-11 75.1 285 25.3
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 1.6e-09 68.6 160 31.9
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 2.9e-06 57.8 187 28.3


User provided reference genes

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