Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_11210 Physcomitrium patens HOM05D005036 ORTHO05D005881 2.5e-78 295.8 201 100.0
Solyc09g008450.3 Solanum lycopersicum HOM05D005036 ORTHO05D005881 1.1e-20 104.4 187 54.0
Sopen09g003280 Solanum pennellii HOM05D005036 ORTHO05D005881 1.1e-20 104.4 187 56.1
SGA_v2.0_scaffold224G42932 Striga asiatica HOM05D005036 ORTHO05D005881 5.3e-20 102.1 187 50.3
PGSC0003DMG400003873 Solanum tuberosum HOM05D005036 ORTHO05D005881 6.9e-20 101.7 187 56.1
Migut.L01721 Erythranthe guttata HOM05D005036 ORTHO05D005881 9.0e-20 101.3 169 58.0
AagrBONN_evm.TU.Sc2ySwM_368.2717 Anthoceros agrestis HOM05D005036 ORTHO05D005881 1.5e-19 100.5 166 48.2
RhsimUnG0004000 Rhododendron simsii HOM05D005036 ORTHO05D005881 1.5e-19 100.5 176 53.4
RhsimUnG0067400 Rhododendron simsii HOM05D005036 ORTHO05D005881 1.5e-19 100.5 176 53.4
MD12G1106800 Malus domestica HOM05D005036 ORTHO05D005881 2.6e-19 99.8 190 55.8
Thecc.05G071400 Theobroma cacao HOM05D005036 ORTHO05D005881 4.4e-19 99.0 176 58.5
Aqoxy1G01100 Aquilegia oxysepala HOM05D005036 ORTHO05D005881 7.6e-19 98.2 190 48.4
Oeu016995.1 Olea europaea HOM05D005036 ORTHO05D005881 7.6e-19 98.2 181 55.8
CiPaw.10G127400 Carya illinoinensis HOM05D005036 ORTHO05D005881 9.9e-19 97.8 185 54.6
SEGI_13906 Sequoiadendron giganteum HOM05D005036 ORTHO05D005881 9.9e-19 97.8 174 59.2
Haze_20497 Corylus avellana HOM05D005036 ORTHO05D005881 1.3e-18 97.4 181 51.4
CARHR084400 Cardamine hirsuta HOM05D005036 ORTHO05D005881 1.7e-18 97.1 189 51.3
RcHm_v2.0_Chr3g0470841 Rosa chinensis HOM05D005036 ORTHO05D005881 2.2e-18 96.7 174 58.0
Atru.chr8.1751 Acer truncatum HOM05D005036 ORTHO05D005881 2.9e-18 96.3 186 54.3
Nn2g13858 Nelumbo nucifera HOM05D005036 ORTHO05D005881 2.9e-18 96.3 187 54.5
Nitab4.5_0002373g0080 Nicotiana tabacum HOM05D005036 ORTHO05D005881 2.9e-18 96.3 188 53.7
Nitab4.5_0003314g0090 Nicotiana tabacum HOM05D005036 ORTHO05D005881 2.9e-18 96.3 188 53.2
unitig_578.g16379 Utricularia gibba HOM05D000468 ORTHO05D005881 4.9e-18 95.5 177 55.4
AL3G21130 Arabidopsis lyrata HOM05D005036 ORTHO05D005881 8.4e-18 94.7 189 50.3
FAN02G0694 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.4e-18 94.7 174 58.0
Thhalv10021529m.g Eutrema salsugineum HOM05D005036 ORTHO05D005881 1.1e-17 94.4 189 49.7
Peaxi162Scf01128g00018 Petunia axillaris HOM05D005036 ORTHO05D005881 1.1e-17 94.4 184 41.3
CANSAT80G0983 Cannabis sativa HOM05D005036 ORTHO05D005881 1.4e-17 94.0 181 54.7
Cpa.g.sc92.91 Carica papaya HOM05D005036 ORTHO05D005881 1.4e-17 94.0 190 51.6
FAN05G3428 Fragaria x ananassa HOM05D005036 ORTHO05D005881 1.4e-17 94.0 174 58.0
FAN09G0503 Fragaria x ananassa HOM05D005036 ORTHO05D000003 1.4e-17 94.0 174 58.0
Gohir.D01G201000 Gossypium hirsutum HOM05D005036 ORTHO05D005881 1.4e-17 94.0 162 59.9
Peaxi162Scf00110g00120 Petunia axillaris HOM05D005036 ORTHO05D005881 1.4e-17 94.0 188 55.3
VMungo0720G2361 Vigna mungo HOM05D005036 ORTHO05D005881 1.4e-17 94.0 164 61.6
Actinidia31315 Actinidia chinensis HOM05D005036 ORTHO05D005881 1.9e-17 93.6 191 52.4
FAN05G0966 Fragaria x ananassa HOM05D005036 ORTHO05D005881 1.9e-17 93.6 174 58.0
Oeu056532.1 Olea europaea HOM05D005036 ORTHO05D005881 1.9e-17 93.6 178 56.2
Migut.J00453 Erythranthe guttata HOM05D005036 ORTHO05D005881 2.4e-17 93.2 181 54.7
Lj5g0011319 Lotus japonicus HOM05D005036 ORTHO05D005881 2.4e-17 93.2 173 54.3
Nitab4.5_0000132g0510 Nicotiana tabacum HOM05D005036 ORTHO05D005881 2.4e-17 93.2 186 53.8
Gohir.A01G214100 Gossypium hirsutum HOM05D005036 ORTHO05D005881 3.2e-17 92.8 176 56.8
Prupe.7G125700 Prunus persica HOM05D005036 ORTHO05D005881 3.2e-17 92.8 191 54.5
Actinidia32478 Actinidia chinensis HOM05D005036 ORTHO05D005881 4.2e-17 92.4 187 51.9
Phvul.007G151800 Phaseolus vulgaris HOM05D005036 ORTHO05D005881 4.2e-17 92.4 163 60.7
CAN.G488.30 Capsicum annuum HOM05D005036 ORTHO05D005881 5.4e-17 92.0 183 56.3
THA.LOC104823230 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 5.4e-17 92.0 190 53.7
MSTRG.10334 Avicennia marina HOM05D005036 ORTHO05D005881 7.1e-17 91.7 187 41.7
Duzib093G0365 Durio zibethinus HOM05D005036 ORTHO05D005881 7.1e-17 91.7 185 55.7
Sed0017772 Sechium edule HOM05D005036 ORTHO05D005881 7.1e-17 91.7 183 54.1
Glyma.13G146500 Glycine max HOM05D005036 ORTHO05D005881 9.3e-17 91.3 159 60.4
FvH4_6g16830 Fragaria vesca HOM05D005036 ORTHO05D005881 1.2e-16 90.9 191 54.5
FAN14G1811 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.2e-16 90.9 191 54.5
Glyma.10G059800 Glycine max HOM05D005036 ORTHO05D005881 1.2e-16 90.9 159 61.6
Cfa017655 Carpinus fangiana HOM05D005036 ORTHO05D005881 1.6e-16 90.5 163 54.6
CBR_g9117 Chara braunii HOM05D005036 ORTHO05D005881 2.1e-16 90.1 161 60.2
PGSC0003DMG400028280 Solanum tuberosum HOM05D005036 ORTHO05D005881 2.1e-16 90.1 164 59.8
Hma1.2p1_0547F.1_g176530 Hydrangea macrophylla HOM05D005036 ORTHO05D005881 2.7e-16 89.7 163 60.1
Sopen10g033320 Solanum pennellii HOM05D005036 ORTHO05D005881 3.5e-16 89.4 184 55.4
TWI53G1582 Tripterygium wilfordii HOM05D005036 ORTHO05D005881 3.5e-16 89.4 186 56.5
Duzib128G0734 Durio zibethinus HOM05D005036 ORTHO05D005881 6.0e-16 88.6 177 57.1
Carub.0003s0899 Capsella rubella HOM05D005036 ORTHO05D005881 7.8e-16 88.2 191 48.2
AT3G09890 Arabidopsis thaliana HOM05D005036 ORTHO05D005881 1.0e-15 87.8 189 49.2
BcaB03g11582 Brassica carinata HOM05D005036 ORTHO05D005881 1.0e-15 87.8 185 50.8
BcaC01g04252 Brassica carinata HOM05D005036 ORTHO05D005881 1.3e-15 87.4 187 30.5
C03p43440 Brassica napus HOM05D005036 ORTHO05D005881 1.3e-15 87.4 187 29.9
BolC3t16615H Brassica oleracea HOM05D005036 ORTHO05D005881 1.3e-15 87.4 187 30.5
A03p35790 Brassica napus HOM05D005036 ORTHO05D005881 1.7e-15 87.0 187 30.5
BraA03t12751Z Brassica rapa HOM05D005036 ORTHO05D005881 1.7e-15 87.0 187 30.5
GSVIVG01033679001 Vitis vinifera HOM05D005036 ORTHO05D005881 1.7e-15 87.0 185 52.4
ClCG10G019890 Citrullus lanatus HOM05D005036 ORTHO05D005881 2.3e-15 86.7 182 54.9
vmacro08795 Vaccinium macrocarpon HOM05D005036 ORTHO05D005881 2.3e-15 86.7 178 41.6
Cc06_g04530 Coffea canephora HOM05D005036 ORTHO05D005881 3.9e-15 85.9 167 56.9
BcaC01g04251 Brassica carinata HOM05D005036 ORTHO05D005881 5.1e-15 85.5 186 50.0
Ciclev10012800m.g Citrus clementina HOM05D005036 ORTHO05D005881 5.1e-15 85.5 189 51.9
SGA_v2.0_scaffold40G15474 Striga asiatica HOM05D005036 ORTHO05D005881 5.1e-15 85.5 185 52.4
Sp3g08240 Schrenkiella parvula HOM05D005036 ORTHO05D005881 6.6e-15 85.1 190 38.9
ECA233G6008 Erigeron canadensis HOM05D005036 ORTHO05D005881 8.7e-15 84.7 166 56.0
Potri.016G097900 Populus trichocarpa HOM05D005036 ORTHO05D005881 8.7e-15 84.7 182 52.2
Lalb_Chr02g0155461 Lupinus albus HOM05D005036 ORTHO05D005881 1.1e-14 84.3 183 54.1
PGR004G0584 Punica granatum HOM05D005036 ORTHO05D005881 1.1e-14 84.3 174 52.3
Gorai.002G245700 Gossypium raimondii HOM05D005036 ORTHO05D005881 1.5e-14 84.0 127 54.3
Manes.09G062100 Manihot esculenta HOM05D005036 ORTHO05D005881 1.5e-14 84.0 189 50.8
Sc02g0001470 Simmondsia chinensis HOM05D005036 ORTHO05D005881 1.5e-14 84.0 191 40.3
arahy.Tifrunner.gnm1.ann1.HJT5F9 Arachis hypogaea HOM05D005036 ORTHO05D005881 1.9e-14 83.6 180 55.6
arahy.Tifrunner.gnm1.ann1.LB0AEW Arachis hypogaea HOM05D005036 ORTHO05D005881 1.9e-14 83.6 180 55.6
Ca_08897_v3 Cicer arietinum L. HOM05D005036 ORTHO05D005881 1.9e-14 83.6 185 52.4
CsaV3_3G036210 Cucumis sativus L. HOM05D005036 ORTHO05D005881 1.9e-14 83.6 185 47.0
PSO339G6683 Papaver somniferum HOM05D005036 ORTHO05D005881 1.9e-14 83.6 189 49.7
HPP92_008393 Vanilla planifolia HOM05D005036 ORTHO05D005881 1.9e-14 83.6 169 42.6
Lsat_1_v5_gn_6_28400 Lactuca sativa HOM05D005036 ORTHO05D005881 2.5e-14 83.2 164 57.3
EL10Ac7g16693 Beta vulgaris HOM05D005036 ORTHO05D005881 3.3e-14 82.8 191 51.3
MELO3C009379.2 Cucumis melo HOM05D005036 ORTHO05D005881 4.3e-14 82.4 182 47.8
HanXRQChr13g0400721 Helianthus annuus HOM05D005036 ORTHO05D005881 4.3e-14 82.4 165 56.4
AUR62026956 Chenopodium quinoa HOM05D005036 ORTHO05D005881 5.6e-14 82.0 167 55.1
AUR62041564 Chenopodium quinoa HOM05D005036 ORTHO05D005881 7.3e-14 81.6 168 54.8
Manes.08G013000 Manihot esculenta HOM05D005036 ORTHO05D005881 9.6e-14 81.3 173 54.3
Sabra06G0095700 Salix brachista HOM05D005036 ORTHO05D005881 9.6e-14 81.3 179 54.7
TAR623G1598 Trochodendron aralioides HOM05D005036 ORTHO05D005881 1.3e-13 80.9 182 49.5
Nitab4.5_0003268g0010 Nicotiana tabacum HOM05D005036 ORTHO05D005881 2.1e-13 80.1 188 40.4
Hund20124 Selenicereus undatus HOM05D005036 ORTHO05D005881 2.1e-13 80.1 186 51.6
CSS0031942 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 3.6e-13 79.3 163 56.4
CSS0042807 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 3.6e-13 79.3 163 56.4
ATR0329G020 Amborella trichopoda HOM05D005036 ORTHO05D005881 6.2e-13 78.6 158 57.0
Medtr1g062770 Medicago truncatula HOM05D005036 ORTHO05D005881 6.2e-13 78.6 185 51.4
CDE06G0353 Ceratophyllum demersum HOM05D005036 ORTHO05D005881 8.1e-13 78.2 182 53.3
DCAR_015009 Daucus carota HOM05D005036 ORTHO05D005881 1.4e-12 77.4 199 39.2
Aa31LG3G2370 Aethionema arabicum HOM05D005036 ORTHO05D005881 1.8e-12 77.0 173 39.3
COL.COLO4_26911 Corchorus olitorius HOM05D005036 ORTHO05D005881 1.8e-12 77.0 195 50.8
Eucgr.A01621 Eucalyptus grandis HOM05D005036 ORTHO05D005881 2.4e-12 76.6 74 47.3
PSO063G2941 Papaver somniferum HOM05D005036 ORTHO05D005881 4.0e-12 75.9 130 47.7
Potri.006G121500 Populus trichocarpa HOM05D005036 ORTHO05D005881 5.3e-12 75.5 182 51.6
Psat6g076000 Pisum sativum HOM05D005036 ORTHO05D005881 6.9e-12 75.1 184 51.1
Zm00001eb003690 Zea mays HOM05D005036 ORTHO05D005881 9.0e-12 74.7 138 62.3
TPR.G20997 Trifolium pratense HOM05D005036 ORTHO05D005881 1.2e-11 74.3 163 53.4
DCAR_017666 Daucus carota HOM05D005036 ORTHO05D005881 1.5e-11 73.9 141 61.7
QL07p042294 Quercus lobata HOM05D005036 ORTHO05D005881 1.5e-11 73.9 210 45.7
Dinv37336 Davidia involucrata HOM05D005036 ORTHO05D005881 3.4e-11 72.8 129 52.7
DCAR_032184 Daucus carota HOM05D005036 ORTHO05D005881 4.5e-11 72.4 187 40.1
Lj3A990G72 Lonicera japonica HOM05D005036 ORTHO05D005881 5.8e-11 72.0 137 62.8
BcaC05g29716 Brassica carinata HOM05D005036 ORTHO05D005881 1.7e-10 70.5 156 29.5
MCO14G431 Micromonas commoda HOM05D005036 ORTHO05D005881 3.8e-10 69.3 61 52.5
BcaC05g29502 Brassica carinata HOM05D005036 ORTHO05D005881 1.4e-09 67.4 172 48.3
BcaC05g29503 Brassica carinata HOM05D005036 ORTHO05D005881 1.4e-09 67.4 172 48.3
C05p58170 Brassica napus HOM05D005036 ORTHO05D005881 1.4e-09 67.4 172 48.3
BolC5t34473H Brassica oleracea HOM05D005036 ORTHO05D005881 1.4e-09 67.4 172 48.3
MBI13_g13833_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.4e-09 67.4 112 54.5
Cre06.g283300 Chlamydomonas reinhardtii HOM05D005036 ORTHO05D005881 5.4e-09 65.5 167 40.7
A05p39150 Brassica napus HOM05D005036 ORTHO05D005881 7.1e-09 65.1 172 50.0
BraA05t22704Z Brassica rapa HOM05D005036 ORTHO05D005881 7.1e-09 65.1 172 50.0
THA.LOC104816666 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 2.1e-08 63.5 77 44.2
MBI01_g04638_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 3.5e-08 62.8 142 59.9
Carub.0003s0923 Capsella rubella HOM05D005036 ORTHO05D005881 4.6e-08 62.4 140 55.7
MBI18_g12436_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 6.0e-08 62.0 139 60.4
Os03g0145800 Oryza sativa ssp. japonica HOM05D005036 ORTHO05D005881 7.9e-08 61.6 138 42.8
Sc02g0001400 Simmondsia chinensis HOM05D005036 ORTHO05D005881 7.9e-08 61.6 180 37.2
BcaC05g29714 Brassica carinata HOM05D005036 ORTHO05D005881 2.3e-07 60.1 156 32.1
BcaC05g29715 Brassica carinata HOM05D005036 ORTHO05D005881 2.3e-07 60.1 156 32.1
BcaC05g29712 Brassica carinata HOM05D005036 ORTHO05D005881 8.7e-07 58.2 156 32.1
BcaC05g29713 Brassica carinata HOM05D005036 ORTHO05D005881 8.7e-07 58.2 156 32.1
MBI16_g11024_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.1e-06 57.8 85 62.4
Psat4g020880 Pisum sativum HOM05D005036 ORTHO05D005881 9.6e-06 54.7 73 64.4


User provided reference genes

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