Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_11042 Physcomitrium patens HOM05D026113 ORTHO05D006797 0.0e+00 2217.6 1255 100.0
Pp3c14_25220 Physcomitrium patens HOM05D026113 ORTHO05D006797 2.2e-257 893.3 1242 53.0
Pp3c16_7650 Physcomitrium patens HOM05D026113 ORTHO05D006797 5.9e-61 240.7 1317 26.4
Pp3c6_9630 Physcomitrium patens HOM05D026113 ORTHO05D006797 1.2e-50 206.5 506 32.6
Pp3c20_22990 Physcomitrium patens HOM05D022188 ORTHO05D006797 1.2e-24 120.2 691 25.2
Pp3c23_10180 Physcomitrium patens HOM05D022188 ORTHO05D006797 3.9e-20 105.1 879 22.6
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 6.2e-10 71.2 118 40.7
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 8.1e-10 70.9 116 40.5
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 1.4e-09 70.1 130 40.8
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 3.1e-09 68.9 113 39.8
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 4.0e-09 68.6 117 41.9
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 4.0e-09 68.6 116 37.9
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 5.2e-09 68.2 164 36.0
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 6.9e-09 67.8 126 37.3
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 6.9e-09 67.8 125 37.6
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 6.9e-09 67.8 125 37.6
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 8.9e-09 67.4 97 44.3
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 8.9e-09 67.4 91 45.1
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 1.2e-08 67.0 161 36.0
CARHR200520 Cardamine hirsuta HOM05D006039 ORTHO05D006797 2.0e-08 66.2 132 38.6
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 2.0e-08 66.2 208 28.4
TPR.G377 Trifolium pratense HOM05D006039 ORTHO05D006797 2.6e-08 65.9 109 42.2
Mapoly0060s0031 Marchantia polymorpha HOM05D022188 ORTHO05D006797 3.4e-08 65.5 85 43.5
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 3.4e-08 65.5 171 38.0
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 4.4e-08 65.1 101 41.6
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 4.4e-08 65.1 91 42.9
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 4.4e-08 65.1 144 38.9
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 4.4e-08 65.1 95 43.2
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 5.8e-08 64.7 91 44.0
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 7.6e-08 64.3 98 43.9
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 7.6e-08 64.3 133 38.3
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 9.9e-08 63.9 195 29.7
AT5G12930 Arabidopsis thaliana HOM05D006039 ORTHO05D006797 1.3e-07 63.5 111 41.4
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 1.3e-07 63.5 107 41.1
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 1.3e-07 63.5 89 44.9
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 1.7e-07 63.2 127 38.6
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 1.7e-07 63.2 86 45.3
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 1.7e-07 63.2 93 46.2
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 2.2e-07 62.8 98 44.9
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 2.2e-07 62.8 200 30.0
Sp6g31030 Schrenkiella parvula HOM05D006039 ORTHO05D006797 2.2e-07 62.8 91 46.2
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 2.9e-07 62.4 224 33.0
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 6.4e-07 61.2 155 35.5
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 6.4e-07 61.2 91 39.6
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 6.4e-07 61.2 154 30.5
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 8.4e-07 60.8 91 40.7
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 8.4e-07 60.8 124 37.9
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 8.4e-07 60.8 155 40.0
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 8.4e-07 60.8 171 33.9
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 1.1e-06 60.5 93 39.8
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 1.1e-06 60.5 93 45.2
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 1.1e-06 60.5 137 35.8
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 1.1e-06 60.5 88 45.5
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 1.1e-06 60.5 89 42.7
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 1.4e-06 60.1 86 43.0
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 1.4e-06 60.1 195 31.8
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 1.4e-06 60.1 124 35.5
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 1.4e-06 60.1 89 44.9
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 1.9e-06 59.7 88 43.2
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 1.9e-06 59.7 91 41.8
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 1.9e-06 59.7 146 33.6
Os09g0488600 Oryza sativa ssp. japonica HOM05D006039 ORTHO05D006797 1.9e-06 59.7 88 42.0
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 1.9e-06 59.7 95 42.1
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 2.4e-06 59.3 127 35.4
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 2.4e-06 59.3 97 38.1
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 3.2e-06 58.9 86 46.5
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 3.2e-06 58.9 102 39.2
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 3.2e-06 58.9 86 40.7
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 4.2e-06 58.5 84 46.4
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 4.2e-06 58.5 192 34.9
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 4.2e-06 58.5 84 42.9
AUR62000084 Chenopodium quinoa HOM05D006039 ORTHO05D000067 5.4e-06 58.2 86 45.3
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 5.4e-06 58.2 116 37.9
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 9.3e-06 57.4 142 33.1
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 9.3e-06 57.4 128 39.8


User provided reference genes

Program Settings