Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_10840 Physcomitrium patens HOM05D003613 ORTHO05D004055 2.2e-106 389.0 203 100.0
Pp3c14_25540 Physcomitrium patens HOM05D003613 ORTHO05D004055 1.5e-35 153.7 104 78.8
Phvul.002G218400 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 3.3e-14 82.8 78 56.4
Zm00001eb177920 Zea mays HOM05D003613 ORTHO05D004055 1.3e-13 80.9 82 53.7
arahy.Tifrunner.gnm1.ann1.M9YY7V Arachis hypogaea HOM05D003613 ORTHO05D004055 4.8e-13 79.0 52 69.2
SMO307G0037 Selaginella moellendorffii HOM05D000818 ORTHO05D004055 6.3e-13 78.6 83 54.2
Zm00001eb412000 Zea mays HOM05D003613 ORTHO05D004055 6.3e-13 78.6 83 55.4
AagrBONN_evm.TU.Sc2ySwM_368.2820 Anthoceros agrestis HOM05D003613 ORTHO05D004055 1.1e-12 77.8 156 36.5
SMO001G0027 Selaginella moellendorffii HOM05D003613 ORTHO05D004055 1.1e-12 77.8 83 51.8
Duzib235G1294 Durio zibethinus HOM05D003613 ORTHO05D004055 5.3e-12 75.5 76 52.6
Ca_00210_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 6.9e-12 75.1 88 52.3
arahy.Tifrunner.gnm1.ann1.DB50AT Arachis hypogaea HOM05D003613 ORTHO05D004055 9.1e-12 74.7 64 59.4
Medtr2g010880 Medicago truncatula HOM05D003613 ORTHO05D004055 1.2e-11 74.3 88 48.9
Duzib160G0323 Durio zibethinus HOM05D003613 ORTHO05D004055 1.5e-11 73.9 77 48.1
Gohir.A06G141700 Gossypium hirsutum HOM05D003613 ORTHO05D004055 1.5e-11 73.9 76 52.6
Glyma.15G063700 Glycine max HOM05D003613 ORTHO05D004055 2.0e-11 73.6 106 42.5
VMungo0540G1949 Vigna mungo HOM05D003613 ORTHO05D004055 2.0e-11 73.6 91 45.1
MELO3C029246.2 Cucumis melo HOM05D003613 ORTHO05D004055 2.6e-11 73.2 85 49.4
Gohir.D06G146000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 3.4e-11 72.8 76 51.3
Gorai.010G170200 Gossypium raimondii HOM05D003613 ORTHO05D004055 3.4e-11 72.8 76 51.3
Lj6g0025627 Lotus japonicus HOM05D003613 ORTHO05D004055 3.4e-11 72.8 78 51.3
Lalb_Chr20g0122601 Lupinus albus HOM05D003613 ORTHO05D004055 3.4e-11 72.8 81 50.6
Phvul.006G195900 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 3.4e-11 72.8 89 49.4
arahy.Tifrunner.gnm1.ann1.T22GZM Arachis hypogaea HOM05D003613 ORTHO05D004055 4.5e-11 72.4 95 46.3
SEGI_37804 Sequoiadendron giganteum HOM05D003613 ORTHO05D004055 4.5e-11 72.4 86 46.5
unitig_22.g6276 Utricularia gibba HOM05D003613 ORTHO05D004055 4.5e-11 72.4 83 51.8
Cfa004173 Carpinus fangiana HOM05D003613 ORTHO05D004055 5.9e-11 72.0 91 47.3
ClCG09G003430 Citrullus lanatus HOM05D003613 ORTHO05D004055 5.9e-11 72.0 85 48.2
Glyma.01G154800 Glycine max HOM05D003613 ORTHO05D004055 5.9e-11 72.0 95 46.3
Glyma.13G250700 Glycine max HOM05D003613 ORTHO05D004055 5.9e-11 72.0 95 46.3
Gohir.A10G049000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 5.9e-11 72.0 76 50.0
Gohir.D10G049600 Gossypium hirsutum HOM05D003613 ORTHO05D004055 5.9e-11 72.0 76 50.0
Gorai.011G053100 Gossypium raimondii HOM05D003613 ORTHO05D004055 5.9e-11 72.0 76 50.0
Os08g0266200 Oryza sativa ssp. japonica HOM05D003613 ORTHO05D004055 5.9e-11 72.0 93 48.4
QL12p003368 Quercus lobata HOM05D003613 ORTHO05D004055 5.9e-11 72.0 76 53.9
AUR62018676 Chenopodium quinoa HOM05D003613 ORTHO05D004055 7.7e-11 71.6 86 52.3
TWI75G1756 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 7.7e-11 71.6 80 50.0
arahy.Tifrunner.gnm1.ann1.XPM13Z Arachis hypogaea HOM05D003613 ORTHO05D004055 1.0e-10 71.2 76 50.0
CsaV3_7G031790 Cucumis sativus L. HOM05D003613 ORTHO05D004055 1.0e-10 71.2 85 48.2
TPR.G13916 Trifolium pratense HOM05D003613 ORTHO05D004055 1.0e-10 71.2 79 46.8
Ca_18450_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 1.3e-10 70.9 83 47.0
Ciclev10026842m.g Citrus clementina HOM05D003613 ORTHO05D004055 1.3e-10 70.9 76 55.3
TWI31G1088 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 2.2e-10 70.1 80 48.8
Glyma.07G187000 Glycine max HOM05D003613 ORTHO05D004055 2.9e-10 69.7 68 54.4
Mapoly0033s0168 Marchantia polymorpha HOM05D000087 ORTHO05D255883 2.9e-10 69.7 108 43.5
Oeu051549.1 Olea europaea HOM05D003613 ORTHO05D004055 2.9e-10 69.7 76 55.3
PGSC0003DMG400014438 Solanum tuberosum HOM05D003613 ORTHO05D004055 2.9e-10 69.7 82 53.7
Cpa.g.sc68.45 Carica papaya HOM05D003613 ORTHO05D004055 3.8e-10 69.3 70 57.1
CiPaw.01G052100 Carya illinoinensis HOM05D003613 ORTHO05D004055 3.8e-10 69.3 78 47.4
Duzib192G0866 Durio zibethinus HOM05D003613 ORTHO05D004055 3.8e-10 69.3 76 50.0
MD09G1229400 Malus domestica HOM05D003613 ORTHO05D004055 3.8e-10 69.3 90 45.6
Sed0021976 Sechium edule HOM05D003613 ORTHO05D004055 3.8e-10 69.3 81 49.4
COL.COLO4_30901 Corchorus olitorius HOM05D003613 ORTHO05D004055 5.0e-10 68.9 77 51.9
Haze_16413 Corylus avellana HOM05D003613 ORTHO05D004055 5.0e-10 68.9 78 51.3
Haze_16416 Corylus avellana HOM05D003613 ORTHO05D004055 5.0e-10 68.9 78 51.3
Gohir.D09G076100 Gossypium hirsutum HOM05D003613 ORTHO05D004055 5.0e-10 68.9 71 52.1
MSTRG.22838 Avicennia marina HOM05D003613 ORTHO05D004055 6.5e-10 68.6 83 49.4
Gohir.A09G076160 Gossypium hirsutum HOM05D003613 ORTHO05D004055 6.5e-10 68.6 71 52.1
Thecc.06G133700 Theobroma cacao HOM05D003613 ORTHO05D004055 6.5e-10 68.6 77 50.6
unitig_8.g3041 Utricularia gibba HOM05D003613 ORTHO05D004055 6.5e-10 68.6 98 45.9
Haze_15237 Corylus avellana HOM05D003613 ORTHO05D004055 8.5e-10 68.2 78 50.0
Dinv21437 Davidia involucrata HOM05D003613 ORTHO05D004055 8.5e-10 68.2 83 49.4
Prupe.3G105500 Prunus persica HOM05D003613 ORTHO05D004055 8.5e-10 68.2 76 48.7
Solyc12g042540.1 Solanum lycopersicum HOM05D003613 ORTHO05D004055 8.5e-10 68.2 82 50.0
SGA_v2.0_scaffold74G24606 Striga asiatica HOM05D003613 ORTHO05D004055 8.5e-10 68.2 54 59.3
ATR0580G444 Amborella trichopoda HOM05D003613 ORTHO05D004055 1.1e-09 67.8 82 47.6
MSTRG.11218 Avicennia marina HOM05D003613 ORTHO05D004055 1.1e-09 67.8 89 51.7
EL10Ac5g12047 Beta vulgaris HOM05D003613 ORTHO05D004055 1.1e-09 67.8 99 49.5
Glyma.15G176700 Glycine max HOM05D003613 ORTHO05D004055 1.1e-09 67.8 95 46.3
Sed0006875 Sechium edule HOM05D003613 ORTHO05D004055 1.1e-09 67.8 79 55.7
TAR383G0763 Trochodendron aralioides HOM05D003613 ORTHO05D004055 1.1e-09 67.8 84 45.2
MSTRG.9389 Avicennia marina HOM05D003613 ORTHO05D004055 1.4e-09 67.4 62 53.2
FAN02G4453 Fragaria x ananassa HOM05D003613 ORTHO05D004055 1.4e-09 67.4 76 47.4
Gorai.006G091300 Gossypium raimondii HOM05D003613 ORTHO05D004055 1.4e-09 67.4 71 52.1
QL10p043081 Quercus lobata HOM05D003613 ORTHO05D004055 1.4e-09 67.4 75 53.3
Sabra03G0136500 Salix brachista HOM05D003613 ORTHO05D004055 1.4e-09 67.4 80 47.5
TPR.G32634 Trifolium pratense HOM05D003613 ORTHO05D004055 1.4e-09 67.4 89 49.4
Atru.chr1.2819 Acer truncatum HOM05D003613 ORTHO05D004055 1.9e-09 67.0 77 55.8
ATR0068G040 Amborella trichopoda HOM05D003613 ORTHO05D004055 1.9e-09 67.0 82 46.3
Glyma.08G062200 Glycine max HOM05D003613 ORTHO05D004055 1.9e-09 67.0 66 54.5
Manes.11G070600 Manihot esculenta HOM05D003613 ORTHO05D004055 1.9e-09 67.0 119 42.9
ECA232G3259 Erigeron canadensis HOM05D003613 ORTHO05D004055 2.5e-09 66.6 70 47.1
Lalb_Chr19g0125611 Lupinus albus HOM05D003613 ORTHO05D004055 2.5e-09 66.6 78 48.7
Psat1g210880 Pisum sativum HOM05D003613 ORTHO05D004055 2.5e-09 66.6 99 42.4
Sopen12g021630 Solanum pennellii HOM05D003613 ORTHO05D004055 2.5e-09 66.6 82 50.0
Ah.12g055300 Amaranthus hybridus HOM05D003613 ORTHO05D004055 3.2e-09 66.2 84 51.2
DCAR_025611 Daucus carota HOM05D003613 ORTHO05D004055 3.2e-09 66.2 85 44.7
Lalb_Chr16g0383261 Lupinus albus HOM05D003613 ORTHO05D004055 3.2e-09 66.2 77 50.6
Oeu033454.1 Olea europaea HOM05D003613 ORTHO05D004055 3.2e-09 66.2 70 51.4
RcHm_v2.0_Chr2g0131951 Rosa chinensis HOM05D003613 ORTHO05D004055 3.2e-09 66.2 76 47.4
SGA_v2.0_scaffold515G52657 Striga asiatica HOM05D003613 ORTHO05D004055 3.2e-09 66.2 94 41.5
ECA247G1662 Erigeron canadensis HOM05D003613 ORTHO05D004055 4.2e-09 65.9 65 53.8
Sabra03G0136400 Salix brachista HOM05D003613 ORTHO05D004055 4.2e-09 65.9 80 46.2
GSVIVG01016088001 Vitis vinifera HOM05D003613 ORTHO05D004055 4.2e-09 65.9 88 47.7
Cc04_g05380 Coffea canephora HOM05D003613 ORTHO05D004055 5.5e-09 65.5 86 46.5
SalBow1G4637 Salvia bowleyana HOM05D003613 ORTHO05D004055 5.5e-09 65.5 91 45.1
CSS0042010 Camellia sinensis var. sinensis HOM05D003613 ORTHO05D004055 7.2e-09 65.1 79 50.6
MD17G1228300 Malus domestica HOM05D003613 ORTHO05D004055 7.2e-09 65.1 76 48.7
Potri.001G038200 Populus trichocarpa HOM05D003613 ORTHO05D004055 7.2e-09 65.1 92 42.4
Potri.001G038750 Populus trichocarpa HOM05D003613 ORTHO05D004055 7.2e-09 65.1 92 42.4
Potri.001G040300 Populus trichocarpa HOM05D003613 ORTHO05D004055 7.2e-09 65.1 80 43.8
Rhsim12G0183300 Rhododendron simsii HOM05D003613 ORTHO05D004055 7.2e-09 65.1 83 49.4
Migut.D01149 Erythranthe guttata HOM05D003613 ORTHO05D004055 9.4e-09 64.7 88 43.2
Lalb_Chr09g0327111 Lupinus albus HOM05D003613 ORTHO05D004055 9.4e-09 64.7 79 45.6
Potri.001G039700 Populus trichocarpa HOM05D003613 ORTHO05D004055 9.4e-09 64.7 64 48.4
ClCG10G012830 Citrullus lanatus HOM05D003613 ORTHO05D004055 1.2e-08 64.3 79 49.4
Aqoxy5G00706 Aquilegia oxysepala HOM05D003613 ORTHO05D004055 1.6e-08 63.9 83 44.6
FvH4_6g28090 Fragaria vesca HOM05D008004 ORTHO05D011218 1.6e-08 63.9 71 49.3
FAN14G0884 Fragaria x ananassa HOM05D008004 ORTHO05D004055 1.6e-08 63.9 71 49.3
Peaxi162Scf00195g00118 Petunia axillaris HOM05D003613 ORTHO05D004055 1.6e-08 63.9 66 53.0
Migut.I00632 Erythranthe guttata HOM05D003613 ORTHO05D004055 2.1e-08 63.5 86 46.5
Nn8g40130 Nelumbo nucifera HOM05D003613 ORTHO05D004055 2.1e-08 63.5 83 44.6
SHI11349 Sapria himalayana HOM05D003613 ORTHO05D004055 2.1e-08 63.5 78 46.2
vmacro19080 Vaccinium macrocarpon HOM05D003613 ORTHO05D004055 2.1e-08 63.5 82 46.3
CAN.G1008.14 Capsicum annuum HOM05D003613 ORTHO05D004055 2.7e-08 63.2 81 45.7
Lj4g0025384 Lotus japonicus HOM05D003613 ORTHO05D004055 2.7e-08 63.2 75 45.3
Sed0012530 Sechium edule HOM05D003613 ORTHO05D004055 2.7e-08 63.2 83 44.6
MELO3C024884.2 Cucumis melo HOM05D003613 ORTHO05D004055 3.6e-08 62.8 79 48.1
CsaV3_3G032670 Cucumis sativus L. HOM05D003613 ORTHO05D004055 3.6e-08 62.8 79 48.1
Eucgr.F03989 Eucalyptus grandis HOM05D003613 ORTHO05D004055 3.6e-08 62.8 84 48.8
Lsat_1_v5_gn_5_9061 Lactuca sativa HOM05D003613 ORTHO05D004055 3.6e-08 62.8 81 44.4
Potri.003G186400 Populus trichocarpa HOM05D003613 ORTHO05D004055 3.6e-08 62.8 78 44.9
THA.LOC104813597 Tarenaya hassleriana HOM05D003613 ORTHO05D004055 3.6e-08 62.8 69 53.6
Manes.04G099000 Manihot esculenta HOM05D003613 ORTHO05D004055 4.7e-08 62.4 81 46.9
Nitab4.5_0005437g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 4.7e-08 62.4 93 46.2
PGSC0003DMG400014217 Solanum tuberosum HOM05D003613 ORTHO05D004055 4.7e-08 62.4 66 53.0
MBI15_g26076_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 7.9e-08 61.6 70 48.6
Nitab4.5_0002700g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 7.9e-08 61.6 68 54.4
AL1G28300 Arabidopsis lyrata HOM05D003613 ORTHO05D004055 1.0e-07 61.2 65 50.8
Sopen03g036670 Solanum pennellii HOM05D003613 ORTHO05D004055 1.0e-07 61.2 87 44.8
HanXRQChr04g0100011 Helianthus annuus HOM05D003613 ORTHO05D004055 1.8e-07 60.5 65 49.2
Rhsim08G0202400 Rhododendron simsii HOM05D003613 ORTHO05D004055 1.8e-07 60.5 98 44.9
Actinidia36859 Actinidia chinensis HOM05D000338 ORTHO05D003721 2.3e-07 60.1 68 48.5
AT1G16170 Arabidopsis thaliana HOM05D003613 ORTHO05D004055 3.0e-07 59.7 65 49.2
TAR626G0045 Trochodendron aralioides HOM05D003147 ORTHO05D004055 3.0e-07 59.7 72 50.0
Aa31LG7G710 Aethionema arabicum HOM05D003613 ORTHO05D004055 5.1e-07 58.9 65 49.2
Lsat_1_v5_gn_4_84900 Lactuca sativa HOM05D003613 ORTHO05D004055 5.1e-07 58.9 84 41.7
A06p12110 Brassica napus HOM05D003613 ORTHO05D004055 6.7e-07 58.5 85 44.7
BraA06t24380Z Brassica rapa HOM05D003613 ORTHO05D004055 6.7e-07 58.5 85 44.7
Nn2g12477 Nelumbo nucifera HOM05D003613 ORTHO05D004055 6.7e-07 58.5 84 41.7
arahy.Tifrunner.gnm1.ann1.LI0G0T Arachis hypogaea HOM05D003613 ORTHO05D004055 8.8e-07 58.2 76 43.4
BcaB02g06598 Brassica carinata HOM05D003613 ORTHO05D004055 8.8e-07 58.2 84 44.0
HanXRQChr05g0157501 Helianthus annuus HOM05D003613 ORTHO05D004055 1.1e-06 57.8 54 53.7
MBI14_g16433_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 2.6e-06 56.6 83 42.2
Aa31LG4G1310 Aethionema arabicum HOM05D003613 ORTHO05D004055 3.3e-06 56.2 71 47.9
BcaB03g14503 Brassica carinata HOM05D003613 ORTHO05D004055 3.3e-06 56.2 84 44.0
C08p44600 Brassica napus HOM05D003613 ORTHO05D004055 3.3e-06 56.2 84 44.0
BolC8t52006H Brassica oleracea HOM05D003613 ORTHO05D004055 3.3e-06 56.2 84 44.0
BolC5t30160H Brassica oleracea HOM05D003613 ORTHO05D004055 7.4e-06 55.1 84 45.2
BcaC08g47524 Brassica carinata HOM05D003613 ORTHO05D004055 9.7e-06 54.7 53 52.8
CARHR016650 Cardamine hirsuta HOM05D003613 ORTHO05D004055 9.7e-06 54.7 84 42.9
ECA246G2284 Erigeron canadensis HOM05D003613 ORTHO05D004055 9.7e-06 54.7 53 52.8


User provided reference genes

Program Settings