Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G112922 Populus trichocarpa HOM05D000626 ORTHO05D003868 4.7e-32 140.6 71 100.0
Potri.T125804 Populus trichocarpa HOM05D000626 ORTHO05D003868 4.7e-32 140.6 71 100.0
Manes.12G098300 Manihot esculenta HOM05D000626 ORTHO05D003868 8.1e-16 86.7 70 61.4
Manes.13G136200 Manihot esculenta HOM05D000626 ORTHO05D003868 5.2e-15 84.0 71 62.0
Lj3g0026150 Lotus japonicus HOM05D000626 ORTHO05D003868 5.8e-14 80.5 71 60.6
Prupe.8G102600 Prunus persica HOM05D000626 ORTHO05D003868 7.5e-14 80.1 70 65.7
CsaV3_2G014400 Cucumis sativus L. HOM05D000626 ORTHO05D003868 9.9e-14 79.7 67 59.7
Psat7g141000 Pisum sativum HOM05D000626 ORTHO05D003868 9.9e-14 79.7 71 59.2
TWI31G0747 Tripterygium wilfordii HOM05D000626 ORTHO05D003868 9.9e-14 79.7 67 62.7
MELO3C021946.2 Cucumis melo HOM05D000626 ORTHO05D003868 1.7e-13 79.0 70 55.7
Duzib052G0942 Durio zibethinus HOM05D000626 ORTHO05D003868 1.7e-13 79.0 60 65.0
Thecc.02G122300 Theobroma cacao HOM05D000626 ORTHO05D003868 1.7e-13 79.0 61 63.9
TWI09G1554 Tripterygium wilfordii HOM05D000626 ORTHO05D003868 2.2e-13 78.6 66 60.6
ClCG09G017810 Citrullus lanatus HOM05D000626 ORTHO05D003868 2.9e-13 78.2 63 60.3
Sed0006655 Sechium edule HOM05D000626 ORTHO05D003868 2.9e-13 78.2 70 55.7
Ca_20850_v3 Cicer arietinum L. HOM05D000626 ORTHO05D003868 4.9e-13 77.4 63 61.9
Lalb_Chr03g0025801 Lupinus albus HOM05D000626 ORTHO05D003868 6.4e-13 77.0 67 58.2
Medtr4g069240 Medicago truncatula HOM05D000626 ORTHO05D003868 6.4e-13 77.0 67 58.2
Cpa.g.sc62.112 Carica papaya HOM05D000626 ORTHO05D003868 8.3e-13 76.6 63 63.5
Dinv26800 Davidia involucrata HOM05D000626 ORTHO05D003868 8.3e-13 76.6 71 54.9
MD15G1269000 Malus domestica HOM05D000626 ORTHO05D003868 8.3e-13 76.6 67 61.2
Atru.chr5.2949 Acer truncatum HOM05D000626 ORTHO05D003868 1.1e-12 76.3 67 56.7
Lalb_Chr01g0002691 Lupinus albus HOM05D000626 ORTHO05D003868 1.1e-12 76.3 67 59.7
MD10G1081300 Malus domestica HOM05D000626 ORTHO05D003868 1.1e-12 76.3 70 61.4
QL11p042537 Quercus lobata HOM05D000626 ORTHO05D003868 1.1e-12 76.3 66 59.1
CANSAT01G0918 Cannabis sativa HOM05D000626 ORTHO05D003868 1.4e-12 75.9 63 58.7
COL.COLO4_32455 Corchorus olitorius HOM05D000626 ORTHO05D003868 1.4e-12 75.9 61 60.7
Gohir.D04G159100 Gossypium hirsutum HOM05D000626 ORTHO05D003868 1.9e-12 75.5 61 59.0
Gorai.012G146500 Gossypium raimondii HOM05D000626 ORTHO05D003868 1.9e-12 75.5 61 59.0
TWI53G0930 Tripterygium wilfordii HOM05D000626 ORTHO05D003868 1.9e-12 75.5 67 58.2
Atru.chr3.513 Acer truncatum HOM05D000626 ORTHO05D003868 2.4e-12 75.1 67 56.7
AUR62011357 Chenopodium quinoa HOM05D000626 ORTHO05D003868 2.4e-12 75.1 67 64.2
Glyma.12G045400 Glycine max HOM05D000626 ORTHO05D003868 2.4e-12 75.1 63 60.3
SGA_v2.0_scaffold33G13424 Striga asiatica HOM05D000626 ORTHO05D003868 2.4e-12 75.1 71 57.7
CiPaw.05G061300 Carya illinoinensis HOM05D000626 ORTHO05D003868 3.2e-12 74.7 66 57.6
FAN20G2380 Fragaria x ananassa HOM05D000626 ORTHO05D003868 3.2e-12 74.7 60 63.3
Glyma.11G120300 Glycine max HOM05D000626 ORTHO05D003868 3.2e-12 74.7 63 58.7
MD05G1070400 Malus domestica HOM05D000626 ORTHO05D003868 3.2e-12 74.7 70 60.0
arahy.Tifrunner.gnm1.ann1.GNS53T Arachis hypogaea HOM05D000626 ORTHO05D003868 4.1e-12 74.3 67 55.2
arahy.Tifrunner.gnm1.ann1.NL7PFA Arachis hypogaea HOM05D000626 ORTHO05D003868 4.1e-12 74.3 67 55.2
Haze_02415 Corylus avellana HOM05D000626 ORTHO05D003868 4.1e-12 74.3 70 61.4
FvH4_2g08200 Fragaria vesca HOM05D000626 ORTHO05D003868 4.1e-12 74.3 60 63.3
FAN15G2364 Fragaria x ananassa HOM05D000626 ORTHO05D003868 4.1e-12 74.3 60 63.3
FAN24G1839 Fragaria x ananassa HOM05D000626 ORTHO05D003868 4.1e-12 74.3 60 63.3
FAN27G0454 Fragaria x ananassa HOM05D000626 ORTHO05D003868 4.1e-12 74.3 60 63.3
RcHm_v2.0_Chr6g0262991 Rosa chinensis HOM05D000626 ORTHO05D003868 4.1e-12 74.3 68 61.8
Sabra07G0026800 Salix brachista HOM05D000626 ORTHO05D003868 4.1e-12 74.3 69 55.1
TAR628G0085 Trochodendron aralioides HOM05D000626 ORTHO05D003868 4.1e-12 74.3 63 57.1
MSTRG.23557 Avicennia marina HOM05D000626 ORTHO05D003868 5.4e-12 73.9 63 58.7
DCAR_017221 Daucus carota HOM05D000626 ORTHO05D003868 5.4e-12 73.9 66 59.1
HPP92_010187 Vanilla planifolia HOM05D000626 ORTHO05D003868 5.4e-12 73.9 65 60.0
Actinidia00502 Actinidia chinensis HOM05D000626 ORTHO05D003868 7.1e-12 73.6 63 60.3
CSS0006874 Camellia sinensis var. sinensis HOM05D000626 ORTHO05D003868 7.1e-12 73.6 69 59.4
Carub.0008s2782 Capsella rubella HOM05D000626 ORTHO05D003868 7.1e-12 73.6 66 57.6
Duzib132G0298 Durio zibethinus HOM05D000626 ORTHO05D003868 7.1e-12 73.6 61 59.0
Gohir.A04G117400 Gossypium hirsutum HOM05D000626 ORTHO05D003868 7.1e-12 73.6 61 57.4
Peaxi162Scf00016g00944 Petunia axillaris HOM05D000626 ORTHO05D003868 7.1e-12 73.6 67 56.7
Potri.005G127000 Populus trichocarpa HOM05D000626 ORTHO05D003868 7.1e-12 73.6 70 55.7
AUR62016705 Chenopodium quinoa HOM05D000626 ORTHO05D003868 9.2e-12 73.2 69 59.4
Dinv39947 Davidia involucrata HOM05D000626 ORTHO05D003868 9.2e-12 73.2 71 53.5
Gohir.A13G048600 Gossypium hirsutum HOM05D000626 ORTHO05D003868 9.2e-12 73.2 61 59.0
Gohir.D13G047000 Gossypium hirsutum HOM05D000626 ORTHO05D003868 9.2e-12 73.2 61 59.0
TPR.G28529 Trifolium pratense HOM05D000626 ORTHO05D003868 9.2e-12 73.2 71 54.9
GSVIVG01031917001 Vitis vinifera HOM05D000626 ORTHO05D003868 9.2e-12 73.2 66 59.1
Migut.H00194 Erythranthe guttata HOM05D000626 ORTHO05D003868 1.2e-11 72.8 63 55.6
Nitab4.5_0008989g0040 Nicotiana tabacum HOM05D000626 ORTHO05D003868 1.2e-11 72.8 73 53.4
Phvul.011G047300 Phaseolus vulgaris HOM05D000626 ORTHO05D003868 1.2e-11 72.8 63 58.7
Hma1.2p1_0066F.1_g036710 Hydrangea macrophylla HOM05D000626 ORTHO05D003868 1.6e-11 72.4 75 54.7
Oeu035116.1 Olea europaea HOM05D000626 ORTHO05D003868 1.6e-11 72.4 71 53.5
TAR376G0372 Trochodendron aralioides HOM05D000626 ORTHO05D003868 1.6e-11 72.4 63 60.3
Cc07_g09070 Coffea canephora HOM05D000626 ORTHO05D003868 2.1e-11 72.0 63 58.7
GSVIVG01019024001 Vitis vinifera HOM05D000626 ORTHO05D003868 2.1e-11 72.0 66 56.1
CSS0014885 Camellia sinensis var. sinensis HOM05D000626 ORTHO05D003868 2.7e-11 71.6 71 53.5
VMungo1127G0953 Vigna mungo HOM05D000626 ORTHO05D003868 2.7e-11 71.6 67 53.7
Cpa.g.sc158.17 Carica papaya HOM05D000626 ORTHO05D003868 3.5e-11 71.2 63 58.7
Duzib264G0072 Durio zibethinus HOM05D000626 ORTHO05D003868 3.5e-11 71.2 63 55.6
Lj4C195G12 Lonicera japonica HOM05D000626 ORTHO05D003868 3.5e-11 71.2 63 55.6
Potri.007G031000 Populus trichocarpa HOM05D000626 ORTHO05D003868 3.5e-11 71.2 69 55.1
CSS0002315 Camellia sinensis var. sinensis HOM05D000626 ORTHO05D003868 4.6e-11 70.9 69 58.0
ECA232G3839 Erigeron canadensis HOM05D000626 ORTHO05D003868 4.6e-11 70.9 54 68.5
Oeu032561.1 Olea europaea HOM05D000626 ORTHO05D003868 4.6e-11 70.9 67 56.7
Potri.004G157900 Populus trichocarpa HOM05D000626 ORTHO05D003868 4.6e-11 70.9 70 55.7
Ciclev10028484m.g Citrus clementina HOM05D000626 ORTHO05D003868 6.0e-11 70.5 71 47.9
Sed0005165 Sechium edule HOM05D000626 ORTHO05D003868 6.0e-11 70.5 63 55.6
Ah.01g019620 Amaranthus hybridus HOM05D000626 ORTHO05D003868 7.8e-11 70.1 64 54.7
Aqoxy5G01696 Aquilegia oxysepala HOM05D000626 ORTHO05D003868 7.8e-11 70.1 63 55.6
HanXRQChr15g0487501 Helianthus annuus HOM05D000626 ORTHO05D003868 7.8e-11 70.1 63 58.7
Actinidia36541 Actinidia chinensis HOM05D000626 ORTHO05D003868 1.0e-10 69.7 69 53.6
Nitab4.5_0000336g0150 Nicotiana tabacum HOM05D000626 ORTHO05D003868 1.0e-10 69.7 52 65.4
Eucgr.G01893 Eucalyptus grandis HOM05D000626 ORTHO05D003868 1.3e-10 69.3 71 52.1
Gorai.013G052700 Gossypium raimondii HOM05D000626 ORTHO05D003868 1.3e-10 69.3 61 55.7
Peaxi162Scf00684g00567 Petunia axillaris HOM05D000626 ORTHO05D003868 1.3e-10 69.3 71 53.5
SGA_v2.0_scaffold276G46656 Striga asiatica HOM05D000626 ORTHO05D003868 1.3e-10 69.3 71 53.5
unitig_37.g12815 Utricularia gibba HOM05D000626 ORTHO05D003868 1.3e-10 69.3 66 56.1
AL8G44800 Arabidopsis lyrata HOM05D000626 ORTHO05D003868 1.7e-10 68.9 66 54.5
BcaB02g10001 Brassica carinata HOM05D000626 ORTHO05D003868 1.7e-10 68.9 66 54.5
BcaC04g23148 Brassica carinata HOM05D000626 ORTHO05D003868 1.7e-10 68.9 65 52.3
A07p17280 Brassica napus HOM05D000626 ORTHO05D003868 1.7e-10 68.9 65 52.3
A09p09850 Brassica napus HOM05D000626 ORTHO05D003868 1.7e-10 68.9 65 52.3
C09p11660 Brassica napus HOM05D000626 ORTHO05D003868 1.7e-10 68.9 65 52.3
BolC9t54060H Brassica oleracea HOM05D000626 ORTHO05D003868 1.7e-10 68.9 65 52.3
CSS0013243 Camellia sinensis var. sinensis HOM05D000626 ORTHO05D003868 1.7e-10 68.9 69 56.5
CSS0037823 Camellia sinensis var. sinensis HOM05D000626 ORTHO05D003868 1.7e-10 68.9 69 56.5
CDE01G0575 Ceratophyllum demersum HOM05D000626 ORTHO05D003868 1.7e-10 68.9 67 52.2
Thhalv10004242m.g Eutrema salsugineum HOM05D000626 ORTHO05D003868 1.7e-10 68.9 66 54.5
Thecc.01G041600 Theobroma cacao HOM05D000626 ORTHO05D003868 1.7e-10 68.9 63 54.0
CARHR281040 Cardamine hirsuta HOM05D000626 ORTHO05D003868 2.3e-10 68.6 66 54.5
Nitab4.5_0001794g0020 Nicotiana tabacum HOM05D000626 ORTHO05D003868 2.3e-10 68.6 69 49.3
Aa31LG1G15220 Aethionema arabicum HOM05D000626 ORTHO05D003868 3.0e-10 68.2 66 53.0
BraA07t29454Z Brassica rapa HOM05D000626 ORTHO05D003868 3.0e-10 68.2 66 54.5
SalBow6G3366 Salvia bowleyana HOM05D000626 ORTHO05D003868 3.0e-10 68.2 71 53.5
AT5G66680 Arabidopsis thaliana HOM05D000626 ORTHO05D003868 3.9e-10 67.8 66 53.0
BraA09t36632Z Brassica rapa HOM05D000626 ORTHO05D003868 3.9e-10 67.8 66 54.5
THA.LOC104819216 Tarenaya hassleriana HOM05D000626 ORTHO05D003868 3.9e-10 67.8 65 53.8
MSTRG.16792 Avicennia marina HOM05D000626 ORTHO05D003868 5.1e-10 67.4 67 52.2
BcaC06g34731 Brassica carinata HOM05D000626 ORTHO05D003868 5.1e-10 67.4 65 50.8
C07p25140 Brassica napus HOM05D000626 ORTHO05D003868 5.1e-10 67.4 65 50.8
BolC7t43044H Brassica oleracea HOM05D000626 ORTHO05D003868 5.1e-10 67.4 65 50.8
Manes.15G148600 Manihot esculenta HOM05D000626 ORTHO05D003868 5.1e-10 67.4 69 55.1
SalBow5G3169 Salvia bowleyana HOM05D000626 ORTHO05D003868 5.1e-10 67.4 63 54.0
Sopen01g051600 Solanum pennellii HOM05D000626 ORTHO05D003868 5.1e-10 67.4 66 51.5
THA.LOC104826869 Tarenaya hassleriana HOM05D000626 ORTHO05D003868 5.1e-10 67.4 66 53.0
ATR0733G160 Amborella trichopoda HOM05D000626 ORTHO05D003868 6.6e-10 67.0 70 52.9
Lsat_1_v5_gn_4_144441 Lactuca sativa HOM05D000626 ORTHO05D003868 6.6e-10 67.0 63 55.6
vmacro02136 Vaccinium macrocarpon HOM05D000626 ORTHO05D003868 6.6e-10 67.0 70 52.9
Prupe.7G148700 Prunus persica HOM05D000626 ORTHO05D003868 8.6e-10 66.6 63 55.6
BcaB04g20111 Brassica carinata HOM05D000626 ORTHO05D003868 1.1e-09 66.2 65 50.8
COL.COLO4_22139 Corchorus olitorius HOM05D000626 ORTHO05D003868 1.1e-09 66.2 66 50.0
Hund06221 Selenicereus undatus HOM05D000626 ORTHO05D003868 1.1e-09 66.2 69 50.7
Solyc01g109410.4 Solanum lycopersicum HOM05D000626 ORTHO05D003868 1.5e-09 65.9 66 50.0
Lj5C200G5 Lonicera japonica HOM05D000626 ORTHO05D003868 1.9e-09 65.5 71 52.1
PSO541G5997 Papaver somniferum HOM05D000626 ORTHO05D003868 3.3e-09 64.7 74 48.6
PSO675G2926 Papaver somniferum HOM05D000626 ORTHO05D003868 3.3e-09 64.7 74 48.6
Sp2g30020 Schrenkiella parvula HOM05D000626 ORTHO05D003868 3.3e-09 64.7 66 51.5
CAN.G322.113 Capsicum annuum HOM05D000626 ORTHO05D003868 4.3e-09 64.3 66 48.5
PGR042G1683 Punica granatum HOM05D000626 ORTHO05D003868 4.3e-09 64.3 67 49.3
Sc18g0004660 Simmondsia chinensis HOM05D000626 ORTHO05D003868 7.3e-09 63.5 74 52.7
Ah.03g139660 Amaranthus hybridus HOM05D000626 ORTHO05D003868 1.2e-08 62.8 67 52.2
Aqoxy6G01025 Aquilegia oxysepala HOM05D000626 ORTHO05D003868 1.6e-08 62.4 70 52.9
Mapoly0103s0006 Marchantia polymorpha HOM05D000626 ORTHO05D003868 4.7e-08 60.8 67 50.7
Nn5g29507 Nelumbo nucifera HOM05D000626 ORTHO05D003868 4.7e-08 60.8 52 59.6
EL10Ac6g14893 Beta vulgaris HOM05D000626 ORTHO05D003868 8.1e-08 60.1 62 48.4
Pp3c24_6930 Physcomitrium patens HOM05D000626 ORTHO05D003868 8.1e-08 60.1 58 46.6
Zm00001eb303200 Zea mays HOM05D000626 ORTHO05D003868 8.1e-08 60.1 62 51.6
Hund14135 Selenicereus undatus HOM05D000626 ORTHO05D003868 1.4e-07 59.3 73 45.2
AUR62003200 Chenopodium quinoa HOM05D000626 ORTHO05D003868 1.8e-07 58.9 62 48.4
SGA_v2.0_scaffold58G20567 Striga asiatica HOM05D000626 ORTHO05D003868 1.8e-07 58.9 67 46.3
EL10Ac9g21756 Beta vulgaris HOM05D000626 ORTHO05D003868 4.0e-07 57.8 69 44.9
AUR62008017 Chenopodium quinoa HOM05D000626 ORTHO05D003868 4.0e-07 57.8 62 46.8
Cc02_g17860 Coffea canephora HOM05D000626 ORTHO05D003868 4.0e-07 57.8 65 44.6
SEGI_04451 Sequoiadendron giganteum HOM05D000626 ORTHO05D003868 4.0e-07 57.8 73 46.6
vmacro23069 Vaccinium macrocarpon HOM05D000626 ORTHO05D003868 1.2e-06 56.2 48 62.5
QL11p042736 Quercus lobata HOM05D000626 ORTHO05D003868 7.6e-06 53.5 57 50.9
CBR_g28880 Chara braunii HOM05D000626 ORTHO05D003868 9.9e-06 53.1 52 50.0
SMO358G0537 Selaginella moellendorffii HOM05D000626 ORTHO05D003868 9.9e-06 53.1 49 46.9


User provided reference genes

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