Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.T124807 Populus trichocarpa HOM05D005191 ORTHO05D006725 0.0e+00 1454.9 734 100.0
Potri.018G125171 Populus trichocarpa HOM05D005191 ORTHO05D006725 0.0e+00 1449.9 734 99.7
Sabra18G0106500 Salix brachista HOM05D005191 ORTHO05D006725 0.0e+00 1357.4 758 92.1
Potri.006G065000 Populus trichocarpa HOM05D005191 ORTHO05D006725 0.0e+00 1290.8 724 89.6
Thecc.09G133700 Theobroma cacao HOM05D005191 ORTHO05D006725 0.0e+00 1125.2 729 77.1
QL02p090053 Quercus lobata HOM05D005191 ORTHO05D006725 0.0e+00 1121.7 710 78.0
Manes.06G046300 Manihot esculenta HOM05D005191 ORTHO05D006725 0.0e+00 1120.1 734 76.8
CiPaw.03G249200 Carya illinoinensis HOM05D005191 ORTHO05D006725 0.0e+00 1114.0 711 77.9
COL.COLO4_15579 Corchorus olitorius HOM05D005191 ORTHO05D006725 0.0e+00 1113.6 729 76.7
Ciclev10007583m.g Citrus clementina HOM05D005191 ORTHO05D006725 0.0e+00 1110.5 731 75.2
TWI63G0111 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 0.0e+00 1103.2 712 76.1
Gorai.004G107900 Gossypium raimondii HOM05D005191 ORTHO05D006725 0.0e+00 1102.8 728 75.3
Cfa002299 Carpinus fangiana HOM05D005191 ORTHO05D006725 0.0e+00 1097.8 731 75.5
Prupe.7G249300 Prunus persica HOM05D005191 ORTHO05D006725 0.0e+00 1093.2 728 74.2
Gohir.A08G088900 Gossypium hirsutum HOM05D005191 ORTHO05D006725 0.0e+00 1089.7 714 75.8
RcHm_v2.0_Chr2g0087561 Rosa chinensis HOM05D005191 ORTHO05D006725 0.0e+00 1083.9 709 75.0
CANSAT11G2540 Cannabis sativa HOM05D005191 ORTHO05D006725 0.0e+00 1081.6 744 72.2
TWI32G0152 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 0.0e+00 1080.9 712 74.4
FvH4_1g02530 Fragaria vesca HOM05D005191 ORTHO05D006725 1.1e-309 1066.2 711 73.4
FAN19G1407 Fragaria x ananassa HOM05D005191 ORTHO05D006725 4.2e-309 1064.3 711 73.3
FAN23G0864 Fragaria x ananassa HOM05D005191 ORTHO05D006725 6.7e-307 1057.0 728 71.7
FAN26G1428 Fragaria x ananassa HOM05D005191 ORTHO05D006725 6.7e-307 1057.0 711 72.9
MD15G1165500 Malus domestica HOM05D005191 ORTHO05D006725 8.8e-307 1056.6 743 71.6
FAN28G1162 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.1e-306 1056.2 706 73.2
TAR625G1134 Trochodendron aralioides HOM05D005191 ORTHO05D006725 1.1e-306 1056.2 712 74.7
CSS0021683 Camellia sinensis var. sinensis HOM05D005191 ORTHO05D006725 5.7e-306 1053.9 730 73.7
MD02G1022800 Malus domestica HOM05D005191 ORTHO05D006725 1.3e-305 1052.7 730 71.8
Cpa.g.sc46.51 Carica papaya HOM05D005191 ORTHO05D006725 2.6e-303 1045.0 731 71.5
THA.LOC104826555 Tarenaya hassleriana HOM05D005191 ORTHO05D006725 3.0e-299 1031.6 729 69.4
Gohir.D08G100100 Gossypium hirsutum HOM05D005191 ORTHO05D006725 6.7e-299 1030.4 685 74.5
Sed0022210 Sechium edule HOM05D005191 ORTHO05D006725 4.4e-298 1027.7 726 70.0
Nn2g12129 Nelumbo nucifera HOM05D005191 ORTHO05D006725 7.4e-298 1026.9 712 71.3
Eucgr.E03534 Eucalyptus grandis HOM05D005191 ORTHO05D006725 1.1e-296 1023.1 745 69.0
CsaV3_1G027890 Cucumis sativus L. HOM05D005191 ORTHO05D006725 1.3e-294 1016.1 731 69.8
Glyma.17G110600 Glycine max HOM05D005191 ORTHO05D006725 9.4e-293 1010.0 720 71.0
Cc06_g08000 Coffea canephora HOM05D005191 ORTHO05D006725 1.8e-291 1005.7 727 68.0
Cc06_g08010 Coffea canephora HOM05D005191 ORTHO05D006725 1.8e-291 1005.7 727 68.0
Lj7A435G51 Lonicera japonica HOM05D005191 ORTHO05D006725 2.3e-291 1005.4 731 68.9
Aqoxy7G02403 Aquilegia oxysepala HOM05D005191 ORTHO05D006725 2.6e-290 1001.9 706 70.8
Duzib150G0407 Durio zibethinus HOM05D005191 ORTHO05D006725 8.2e-289 996.9 735 70.5
Glyma.13G160800 Glycine max HOM05D005191 ORTHO05D006725 4.1e-288 994.6 721 69.6
Sopen07g001100 Solanum pennellii HOM05D005191 ORTHO05D006725 7.0e-288 993.8 711 69.2
Phvul.003G169500 Phaseolus vulgaris HOM05D005191 ORTHO05D006725 2.6e-287 991.9 711 70.3
Rhsim03G0251800 Rhododendron simsii HOM05D005191 ORTHO05D006725 1.1e-285 986.5 711 70.5
MSTRG.26350 Avicennia marina HOM05D005191 ORTHO05D006725 1.5e-285 986.1 711 68.5
arahy.Tifrunner.gnm1.ann1.0L2UMW Arachis hypogaea HOM05D005191 ORTHO05D006725 1.2e-284 983.0 711 68.6
ECA236G3625 Erigeron canadensis HOM05D005191 ORTHO05D006725 1.2e-284 983.0 709 67.6
Lalb_Chr12g0198261 Lupinus albus HOM05D005191 ORTHO05D006725 1.2e-284 983.0 711 69.6
ClCG06G011590 Citrullus lanatus HOM05D005191 ORTHO05D006725 2.7e-284 981.9 783 64.5
arahy.Tifrunner.gnm1.ann1.W0WM15 Arachis hypogaea HOM05D005191 ORTHO05D006725 3.6e-284 981.5 711 68.5
Sc18g0000280 Simmondsia chinensis HOM05D005191 ORTHO05D006725 8.0e-284 980.3 714 68.3
PSO017G2350 Papaver somniferum HOM05D005191 ORTHO05D006725 1.0e-283 979.9 703 69.1
VMungo1215G2132 Vigna mungo HOM05D005191 ORTHO05D006725 1.8e-283 979.2 723 68.5
CAN.G1663.1 Capsicum annuum HOM05D005191 ORTHO05D006725 5.2e-283 977.6 710 68.3
PSO170G6846 Papaver somniferum HOM05D005191 ORTHO05D006725 9.7e-282 973.4 703 68.8
Lsat_1_v5_gn_8_61061 Lactuca sativa HOM05D005191 ORTHO05D006725 7.0e-280 967.2 711 66.8
Nitab4.5_0000374g0090 Nicotiana tabacum HOM05D005191 ORTHO05D006725 2.2e-278 962.2 689 68.8
Psat4g036440 Pisum sativum HOM05D005191 ORTHO05D006725 3.8e-278 961.4 709 67.4
HanXRQChr05g0143851 Helianthus annuus HOM05D005191 ORTHO05D006725 5.0e-278 961.1 717 66.7
Migut.K00420 Erythranthe guttata HOM05D005191 ORTHO05D006725 1.5e-277 959.5 714 66.4
Solyc07g007810.3 Solanum lycopersicum HOM05D005191 ORTHO05D006725 1.4e-275 953.0 711 67.4
Peaxi162Scf00088g01225 Petunia axillaris HOM05D005191 ORTHO05D006725 5.7e-274 947.6 711 66.5
SGA_v2.0_scaffold63G21813 Striga asiatica HOM05D005191 ORTHO05D006725 3.1e-272 941.8 715 66.0
Lj4g0015768 Lotus japonicus HOM05D005191 ORTHO05D006725 5.9e-271 937.6 717 66.7
AUR62013300 Chenopodium quinoa HOM05D005191 ORTHO05D006725 2.9e-270 935.3 722 64.8
TPR.G7618 Trifolium pratense HOM05D005191 ORTHO05D006725 1.5e-269 932.9 694 67.4
PGR142G3543 Punica granatum HOM05D005191 ORTHO05D006725 4.5e-263 911.4 710 66.1
Sp3g26260 Schrenkiella parvula HOM05D005191 ORTHO05D006725 4.0e-259 898.3 730 62.1
EL10Ac8g18733 Beta vulgaris HOM05D005191 ORTHO05D006725 1.2e-258 896.7 828 57.4
Aa31LG8G12200 Aethionema arabicum HOM05D005191 ORTHO05D006725 5.8e-258 894.4 724 63.0
Dinv41468 Davidia involucrata HOM05D005191 ORTHO05D006725 9.8e-258 893.6 589 75.7
Hund26552 Selenicereus undatus HOM05D005191 ORTHO05D006725 2.0e-255 885.9 715 62.9
A06p26710 Brassica napus HOM05D005191 ORTHO05D006725 5.0e-254 881.3 707 62.0
Atru.chr7.1956 Acer truncatum HOM05D005191 ORTHO05D006725 8.6e-254 880.6 560 77.0
BcaC01g02222 Brassica carinata HOM05D005191 ORTHO05D006725 5.2e-251 871.3 708 61.7
C03p67700 Brassica napus HOM05D005191 ORTHO05D006725 5.2e-251 871.3 708 61.7
AT2G11000 Arabidopsis thaliana HOM05D005191 ORTHO05D006725 1.5e-250 869.8 723 61.5
DCAR_009327 Daucus carota HOM05D005191 ORTHO05D006725 5.8e-250 867.8 728 62.8
BcaB02g10775 Brassica carinata HOM05D005191 ORTHO05D006725 2.2e-249 865.9 731 60.5
BolSC21t60229H Brassica oleracea HOM05D005191 ORTHO05D006725 3.7e-249 865.1 712 61.1
Carub.0003s2755 Capsella rubella HOM05D005191 ORTHO05D006725 1.6e-247 859.8 728 60.3
AL3G44790 Arabidopsis lyrata HOM05D005191 ORTHO05D006725 3.0e-246 855.5 723 60.4
Nitab4.5_0005159g0010 Nicotiana tabacum HOM05D005191 ORTHO05D006725 1.1e-245 853.6 615 68.3
AUR62011184 Chenopodium quinoa HOM05D005191 ORTHO05D006725 1.6e-244 849.7 734 60.4
Actinidia26371 Actinidia chinensis HOM05D005191 ORTHO05D006725 8.1e-244 847.4 710 63.8
ATR0800G098 Amborella trichopoda HOM05D005191 ORTHO05D006725 3.2e-240 835.5 661 64.3
Medtr4g115450 Medicago truncatula HOM05D005191 ORTHO05D006725 1.1e-237 827.0 614 66.6
BraA06t25606Z Brassica rapa HOM05D005191 ORTHO05D006725 1.5e-237 826.6 722 58.4
MELO3C010304.2 Cucumis melo HOM05D005191 ORTHO05D006725 5.1e-230 801.6 749 58.2
Thhalv10022576m.g Eutrema salsugineum HOM05D005191 ORTHO05D006725 5.3e-211 738.4 610 62.0
GSVIVG01015604001 Vitis vinifera HOM05D005191 ORTHO05D006725 2.0e-210 736.5 473 77.4
SalBow1G1849 Salvia bowleyana HOM05D005191 ORTHO05D006725 1.6e-204 716.8 622 58.2
SEGI_14008 Sequoiadendron giganteum HOM05D005191 ORTHO05D006725 3.0e-198 696.0 730 51.8
vmacro06157 Vaccinium macrocarpon HOM05D005191 ORTHO05D006725 3.7e-188 662.5 454 72.0
Oeu052176.1 Olea europaea HOM05D005191 ORTHO05D006725 1.5e-178 630.6 473 66.4
HPP92_010843 Vanilla planifolia HOM05D005191 ORTHO05D006725 2.6e-173 613.2 456 66.9
Pp3c26_8550 Physcomitrium patens HOM05D005191 ORTHO05D006725 9.7e-173 611.3 737 46.5
Ah.14g079340 Amaranthus hybridus HOM05D005191 ORTHO05D006725 2.2e-172 610.1 467 63.6
Mapoly0005s0239 Marchantia polymorpha HOM05D005191 ORTHO05D006725 2.0e-170 603.6 742 44.6
CARHR104890 Cardamine hirsuta HOM05D005191 ORTHO05D006725 2.2e-169 600.1 472 63.3
Haze_25489 Corylus avellana HOM05D005191 ORTHO05D006725 6.8e-158 562.0 433 68.8
Hund26401 Selenicereus undatus HOM05D005191 ORTHO05D006725 1.2e-157 561.2 480 59.8
Sabra06G0047500 Salix brachista HOM05D005191 ORTHO05D006725 8.0e-151 538.5 308 87.7
Zm00001eb192130 Zea mays HOM05D005191 ORTHO05D006725 1.4e-150 537.7 427 62.5
Ca_21665_v3 Cicer arietinum L. HOM05D005191 ORTHO05D006725 4.9e-148 529.3 390 68.5
AagrBONN_evm.TU.Sc2ySwM_344.2372 Anthoceros agrestis HOM05D005191 ORTHO05D006725 5.0e-145 519.2 690 42.5
Haze_25491 Corylus avellana HOM05D005191 ORTHO05D006725 8.9e-142 508.4 381 68.5
Os02g0803250 Oryza sativa ssp. japonica HOM05D005191 ORTHO05D006725 3.6e-135 486.5 689 42.8
unitig_0.g2715 Utricularia gibba HOM05D005191 ORTHO05D006725 2.9e-132 476.9 421 59.1
CBR_g29413 Chara braunii HOM05D005191 ORTHO05D006725 5.6e-128 462.6 750 38.1
SMO174G0034 Selaginella moellendorffii HOM05D005191 ORTHO05D006725 1.7e-121 441.0 737 37.9
Ca_06948_v3 Cicer arietinum L. HOM05D005191 ORTHO05D006725 6.4e-116 422.5 327 64.8
CDE05G1862 Ceratophyllum demersum HOM05D005191 ORTHO05D006725 3.9e-113 413.3 369 60.4
Actinidia38723 Actinidia chinensis HOM05D005191 ORTHO05D006725 7.6e-109 399.1 295 69.2
GSVIVG01002648001 Vitis vinifera HOM05D005191 ORTHO05D006725 3.0e-81 307.4 193 78.2
Psat6g224720 Pisum sativum HOM05D005191 ORTHO05D006725 5.7e-72 276.6 192 68.8
vmacro06156 Vaccinium macrocarpon HOM05D005191 ORTHO05D006725 2.0e-69 268.1 245 59.2
FAN06G0842 Fragaria x ananassa HOM05D005191 ORTHO05D006725 6.3e-55 219.9 315 43.2
CDE05G1976 Ceratophyllum demersum HOM05D005191 ORTHO05D006725 6.1e-42 176.8 156 57.1
Rhsim13G0106800 Rhododendron simsii HOM05D005191 ORTHO05D006725 1.4e-38 165.6 144 62.5
unitig_0.g2716 Utricularia gibba HOM05D005191 ORTHO05D006725 1.4e-38 165.6 152 57.2
Actinidia38722 Actinidia chinensis HOM05D005191 ORTHO05D006725 3.5e-37 161.0 162 54.9
Nitab4.5_0005159g0020 Nicotiana tabacum HOM05D005191 ORTHO05D006725 6.8e-33 146.7 97 72.2
FAN10G4062 Fragaria x ananassa HOM05D005191 ORTHO05D006725 8.9e-33 146.4 125 64.8
TPR.G8947 Trifolium pratense HOM05D005191 ORTHO05D006725 2.0e-32 145.2 115 62.6
PRCOL_00001705 Prasinoderma coloniale HOM05D005191 ORTHO05D006725 7.5e-32 143.3 531 27.5
FAN06G5005 Fragaria x ananassa HOM05D005191 ORTHO05D006725 6.4e-31 140.2 267 36.3
Cre06.g300650 Chlamydomonas reinhardtii HOM05D005191 ORTHO05D006725 2.7e-29 134.8 813 24.0
RcHm_v2.0_Chr5g0051701 Rosa chinensis HOM05D005191 ORTHO05D006725 1.0e-25 122.9 131 51.1
FvH4_7g23890 Fragaria vesca HOM05D005191 ORTHO05D006725 4.0e-25 120.9 96 60.4
FAN26G2291 Fragaria x ananassa HOM05D005191 ORTHO05D006725 5.8e-24 117.1 84 71.4
FAN10G2766 Fragaria x ananassa HOM05D005191 ORTHO05D006725 7.5e-24 116.7 83 71.1
MBI13_g29624_MAGBIO Magnolia biondii HOM05D005191 ORTHO05D006725 3.3e-19 101.3 66 71.2
FAN15G1193 Fragaria x ananassa HOM05D002169 ORTHO05D006927 3.4e-16 91.3 74 60.8
Rhsim05G0138400 Rhododendron simsii HOM05D005191 ORTHO05D006725 3.7e-15 87.8 115 47.8
COL.COLO4_23752 Corchorus olitorius HOM05D005191 ORTHO05D016248 3.3e-11 74.7 61 62.3
FvH4_1g29180 Fragaria vesca HOM05D005191 ORTHO05D025363 2.1e-10 72.0 51 66.7
Rhsim10G0150400 Rhododendron simsii HOM05D005191 ORTHO05D030537 2.8e-10 71.6 51 66.7
COL.COLO4_21409 Corchorus olitorius HOM05D005191 ORTHO05D016248 1.4e-09 69.3 56 64.3
GSVIVG01012804001 Vitis vinifera HOM05D005191 ORTHO05D006725 4.0e-09 67.8 71 49.3
Sp3g26280 Schrenkiella parvula HOM05D005191 ORTHO05D012938 4.4e-08 64.3 67 47.8
Thhalv10022959m.g Eutrema salsugineum HOM05D005191 ORTHO05D006725 5.8e-08 63.9 110 37.3


User provided reference genes

Program Settings