Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.T124704 Populus trichocarpa HOM05D005713 ORTHO05D007751 0.0e+00 1087.4 566 100.0
Potri.009G111692 Populus trichocarpa HOM05D005713 ORTHO05D007751 0.0e+00 1080.1 567 98.8
Sabra09G0085300 Salix brachista HOM05D005713 ORTHO05D007751 6.8e-299 1030.0 567 94.2
Manes.15G148000 Manihot esculenta HOM05D005713 ORTHO05D007751 5.8e-250 867.5 569 79.3
Duzib052G0462 Durio zibethinus HOM05D005713 ORTHO05D007751 4.6e-239 831.2 565 75.9
CiPaw.06G137900 Carya illinoinensis HOM05D005713 ORTHO05D007751 6.0e-239 830.9 570 75.3
Duzib132G0001 Durio zibethinus HOM05D005713 ORTHO05D007751 6.7e-238 827.4 565 75.8
Ciclev10028141m.g Citrus clementina HOM05D005713 ORTHO05D007751 1.5e-237 826.2 554 74.9
COL.COLO4_32466 Corchorus olitorius HOM05D005713 ORTHO05D007751 3.1e-235 818.5 566 74.0
Atru.chr5.2933 Acer truncatum HOM05D005713 ORTHO05D007751 2.0e-234 815.8 571 72.3
Gorai.005G229000 Gossypium raimondii HOM05D005713 ORTHO05D007751 3.4e-234 815.1 565 74.3
QL11p042284 Quercus lobata HOM05D005713 ORTHO05D007751 4.5e-234 814.7 553 75.8
Thecc.02G121600 Theobroma cacao HOM05D005713 ORTHO05D007751 2.9e-233 812.0 558 74.7
Gohir.A03G180100 Gossypium hirsutum HOM05D005713 ORTHO05D007751 4.9e-233 811.2 565 74.0
Gohir.D02G203009 Gossypium hirsutum HOM05D005713 ORTHO05D007751 6.5e-233 810.8 565 73.8
GSVIVG01031911001 Vitis vinifera HOM05D005713 ORTHO05D007751 8.4e-233 810.4 555 75.1
TAR381G0424 Trochodendron aralioides HOM05D005713 ORTHO05D007751 3.5e-231 805.1 573 72.6
CANSAT25G3337 Cannabis sativa HOM05D005713 ORTHO05D007751 5.1e-230 801.2 566 72.3
Prupe.8G105700 Prunus persica HOM05D005713 ORTHO05D007751 4.3e-229 798.1 567 70.9
MD05G1072000 Malus domestica HOM05D005713 ORTHO05D007751 7.4e-229 797.3 572 71.2
MD10G1082600 Malus domestica HOM05D005713 ORTHO05D007751 7.4e-229 797.3 573 73.3
Oeu021892.1 Olea europaea HOM05D005713 ORTHO05D007751 3.7e-228 795.0 518 75.9
RcHm_v2.0_Chr6g0262411 Rosa chinensis HOM05D005713 ORTHO05D007751 6.2e-228 794.3 566 74.2
Nn1g05118 Nelumbo nucifera HOM05D005713 ORTHO05D007751 2.4e-227 792.3 559 71.6
Lj3g0005966 Lotus japonicus HOM05D005713 ORTHO05D007751 1.5e-226 789.6 569 70.5
CSS0002132 Camellia sinensis var. sinensis HOM05D005713 ORTHO05D007751 7.6e-226 787.3 555 73.0
ClCG02G005320 Citrullus lanatus HOM05D005713 ORTHO05D007751 1.7e-225 786.2 551 71.7
Cpa.g.sc62.105 Carica papaya HOM05D005713 ORTHO05D007751 2.2e-225 785.8 570 71.6
CsaV3_7G010230 Cucumis sativus L. HOM05D005713 ORTHO05D007751 4.2e-224 781.6 545 72.3
arahy.Tifrunner.gnm1.ann1.A5JIR8 Arachis hypogaea HOM05D005713 ORTHO05D007751 5.5e-224 781.2 572 69.4
arahy.Tifrunner.gnm1.ann1.6A0IVA Arachis hypogaea HOM05D005713 ORTHO05D007751 9.3e-224 780.4 572 69.4
Glyma.11G120800 Glycine max HOM05D005713 ORTHO05D007751 4.6e-223 778.1 570 69.3
Hma1.2p1_0066F.1_g036800 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 7.9e-223 777.3 515 74.8
Phvul.011G047800 Phaseolus vulgaris HOM05D005713 ORTHO05D007751 2.3e-222 775.8 566 69.1
Eucgr.G00476 Eucalyptus grandis HOM05D005713 ORTHO05D007751 3.0e-222 775.4 552 72.3
THA.LOC104800072 Tarenaya hassleriana HOM05D005713 ORTHO05D007751 3.9e-222 775.0 509 76.0
Lalb_Chr03g0025831 Lupinus albus HOM05D005713 ORTHO05D007751 6.7e-222 774.2 569 69.4
VMungo1127G1847 Vigna mungo HOM05D005713 ORTHO05D007751 6.7e-222 774.2 557 69.7
FvH4_2g07950 Fragaria vesca HOM05D005713 ORTHO05D007751 2.5e-221 772.3 548 74.1
Aqoxy5G01712 Aquilegia oxysepala HOM05D005713 ORTHO05D007751 4.3e-221 771.5 566 71.0
Cc02_g17920 Coffea canephora HOM05D005713 ORTHO05D007751 7.4e-221 770.8 449 81.5
Sopen10g022910 Solanum pennellii HOM05D005713 ORTHO05D007751 1.3e-220 770.0 551 71.0
PGSC0003DMG400005550 Solanum tuberosum HOM05D005713 ORTHO05D007751 2.2e-220 769.2 559 69.2
Medtr4g069080 Medicago truncatula HOM05D005713 ORTHO05D007751 1.1e-219 766.9 545 70.1
Nitab4.5_0001361g0160 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.1e-219 766.9 550 70.7
Solyc10g051200.2 Solanum lycopersicum HOM05D005713 ORTHO05D007751 1.4e-219 766.5 551 70.8
MSTRG.20107 Avicennia marina HOM05D005713 ORTHO05D007751 2.4e-219 765.8 544 69.3
TPR.G28056 Trifolium pratense HOM05D005713 ORTHO05D007751 3.1e-219 765.4 546 69.6
Lalb_Chr01g0002751 Lupinus albus HOM05D005713 ORTHO05D007751 4.1e-219 765.0 571 69.2
CAN.G1.51 Capsicum annuum HOM05D005713 ORTHO05D007751 6.9e-219 764.2 552 71.2
Sp1g36220 Schrenkiella parvula HOM05D005713 ORTHO05D007751 6.9e-219 764.2 448 80.6
Sed0025253 Sechium edule HOM05D005713 ORTHO05D007751 7.7e-218 760.8 455 81.8
FAN24G3015 Fragaria x ananassa HOM05D005713 ORTHO05D007751 1.0e-217 760.4 482 77.6
Thhalv10011363m.g Eutrema salsugineum HOM05D005713 ORTHO05D007751 1.7e-217 759.6 555 69.9
ATR0733G225 Amborella trichopoda HOM05D005713 ORTHO05D007751 5.0e-217 758.1 452 80.3
PSO700G0051 Papaver somniferum HOM05D005713 ORTHO05D007751 6.5e-217 757.7 563 69.4
AT1G49380 Arabidopsis thaliana HOM05D005713 ORTHO05D007751 8.5e-217 757.3 542 69.9
MELO3C018406.2 Cucumis melo HOM05D005713 ORTHO05D007751 8.5e-217 757.3 551 70.4
BcaB04g17346 Brassica carinata HOM05D005713 ORTHO05D007751 1.4e-216 756.5 534 72.3
AL1G56340 Arabidopsis lyrata HOM05D005713 ORTHO05D007751 1.9e-216 756.1 454 79.1
BcaC07g37058 Brassica carinata HOM05D005713 ORTHO05D007751 2.5e-216 755.7 445 80.4
BolC8t47226H Brassica oleracea HOM05D005713 ORTHO05D007751 7.2e-216 754.2 445 80.2
PGR042G3676 Punica granatum HOM05D005713 ORTHO05D007751 1.2e-215 753.4 530 72.3
C08p04230 Brassica napus HOM05D005713 ORTHO05D007751 1.6e-215 753.1 445 80.0
Rhsim05G0076900 Rhododendron simsii HOM05D005713 ORTHO05D007751 2.1e-215 752.7 563 68.4
A08p04030 Brassica napus HOM05D005713 ORTHO05D007751 2.7e-215 752.3 445 79.8
Peaxi162Scf00003g01334 Petunia axillaris HOM05D005713 ORTHO05D007751 4.6e-215 751.5 543 70.3
Lsat_1_v5_gn_5_173381 Lactuca sativa HOM05D005713 ORTHO05D007751 7.9e-215 750.7 533 72.4
Ca_20845_v3 Cicer arietinum L. HOM05D005713 ORTHO05D007751 1.0e-214 750.4 522 71.5
Psat7g185160 Pisum sativum HOM05D005713 ORTHO05D007751 1.0e-214 750.4 546 70.3
BraA08t32431Z Brassica rapa HOM05D005713 ORTHO05D007751 1.4e-214 750.0 488 74.2
PSO170G4048 Papaver somniferum HOM05D005713 ORTHO05D007751 1.4e-214 750.0 563 68.9
EL10Ac9g21763 Beta vulgaris HOM05D005713 ORTHO05D007751 1.8e-214 749.6 524 71.4
Dinv23558 Davidia involucrata HOM05D005713 ORTHO05D007751 6.7e-214 747.7 510 75.5
CARHR039390 Cardamine hirsuta HOM05D005713 ORTHO05D007751 5.7e-213 744.6 547 67.8
SalBow6G0484 Salvia bowleyana HOM05D005713 ORTHO05D007751 5.7e-213 744.6 454 78.6
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 9.7e-213 743.8 515 72.0
Migut.B00270 Erythranthe guttata HOM05D005713 ORTHO05D007751 1.7e-212 743.0 454 76.7
FAN15G0466 Fragaria x ananassa HOM05D005713 ORTHO05D007751 3.7e-212 741.9 561 71.3
DCAR_022094 Daucus carota HOM05D005713 ORTHO05D007751 3.1e-211 738.8 541 69.1
CDE02G0286 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 5.3e-211 738.0 498 73.3
ECA248G1707 Erigeron canadensis HOM05D005713 ORTHO05D007751 5.3e-211 738.0 422 82.9
HanXRQChr01g0011551 Helianthus annuus HOM05D005713 ORTHO05D007751 2.0e-210 736.1 539 69.4
Nitab4.5_0005152g0070 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.3e-209 733.4 560 67.5
Lj5C201T4 Lonicera japonica HOM05D005713 ORTHO05D007751 1.4e-208 729.9 545 68.6
SGA_v2.0_scaffold58G20572 Striga asiatica HOM05D005713 ORTHO05D007751 5.5e-208 728.0 460 76.5
Os03g0769600 Oryza sativa ssp. japonica HOM05D005713 ORTHO05D007751 7.2e-208 727.6 459 74.9
MBI16_g10988_MAGBIO Magnolia biondii HOM05D005713 ORTHO05D007751 2.7e-207 725.7 557 67.5
Zm00001eb058790 Zea mays HOM05D005713 ORTHO05D007751 1.4e-206 723.4 454 75.8
Hund06219 Selenicereus undatus HOM05D005713 ORTHO05D007751 6.7e-206 721.1 424 81.1
unitig_0.g67 Utricularia gibba HOM05D005713 ORTHO05D007751 5.7e-205 718.0 459 73.9
vmacro19441 Vaccinium macrocarpon HOM05D005713 ORTHO05D007751 5.7e-205 718.0 662 59.1
Carub.0001s3855 Capsella rubella HOM05D005713 ORTHO05D007751 1.3e-204 716.8 428 78.7
AUR62011361 Chenopodium quinoa HOM05D005713 ORTHO05D007751 1.3e-204 716.8 424 81.4
HPP92_018386 Vanilla planifolia HOM05D005713 ORTHO05D007751 8.2e-204 714.1 459 75.2
AUR62016700 Chenopodium quinoa HOM05D005713 ORTHO05D007751 1.8e-203 713.0 516 69.6
Haze_02421 Corylus avellana HOM05D005713 ORTHO05D007751 8.8e-190 667.5 568 65.7
Hma1.2p1_0066F.1_g036810 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 1.8e-182 643.3 372 82.8
SEGI_30892 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 1.8e-182 643.3 469 66.5
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 2.7e-178 629.4 418 73.7
Actinidia17829 Actinidia chinensis HOM05D005713 ORTHO05D007751 3.7e-164 582.4 386 75.6
Mapoly0160s0024 Marchantia polymorpha HOM05D005713 ORTHO05D007751 1.8e-158 563.5 434 61.8
Pp3c5_6360 Physcomitrium patens HOM05D005713 ORTHO05D007751 1.2e-157 560.8 439 60.6
Sc18g0004720 Simmondsia chinensis HOM05D005713 ORTHO05D007751 7.1e-155 551.6 400 69.8
SMO172G0143 Selaginella moellendorffii HOM05D005713 ORTHO05D007751 6.8e-150 535.0 437 58.6
CDE01G0298 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 1.5e-149 533.9 380 70.8
CBR_g46847 Chara braunii HOM05D005713 ORTHO05D007751 6.4e-140 501.9 448 55.4
AagrBONN_evm.TU.Sc2ySwM_228.2211 Anthoceros agrestis HOM05D005713 ORTHO05D007751 1.8e-118 430.6 437 50.6
Cre13.g575000 Chlamydomonas reinhardtii HOM05D005713 ORTHO05D007751 3.3e-112 409.8 491 45.4
CAN.G322.106 Capsicum annuum HOM05D005713 ORTHO05D007751 6.3e-111 405.6 558 45.9
Sopen01g051520 Solanum pennellii HOM05D005713 ORTHO05D007751 7.6e-109 398.7 446 49.6
PGSC0003DMG400025182 Solanum tuberosum HOM05D005713 ORTHO05D007751 1.3e-108 397.9 529 45.6
Solyc01g109330.3 Solanum lycopersicum HOM05D005713 ORTHO05D007751 8.5e-108 395.2 529 44.6
MCO11G018 Micromonas commoda HOM05D005713 ORTHO05D007751 1.0e-105 388.3 477 44.4
TAR381G0857 Trochodendron aralioides HOM05D005713 ORTHO05D007751 4.3e-104 382.9 255 74.9
Nitab4.5_0004280g0110 Nicotiana tabacum HOM05D005713 ORTHO05D007751 5.3e-102 375.9 569 44.3
Peaxi162Scf00016g00106 Petunia axillaris HOM05D005713 ORTHO05D007751 3.6e-98 363.2 443 47.4
Nitab4.5_0004287g0050 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.1e-94 351.7 559 43.1
QL07p047677 Quercus lobata HOM05D005713 ORTHO05D007751 4.2e-83 313.2 176 84.1
PRCOL_00003752 Prasinoderma coloniale HOM05D005713 ORTHO05D007751 1.4e-81 308.1 481 38.5
Glyma.12G045850 Glycine max HOM05D005713 ORTHO05D007751 2.1e-74 284.3 169 78.7
QL07p047674 Quercus lobata HOM05D005713 ORTHO05D021118 1.5e-51 208.4 201 61.7
Glyma.12G045901 Glycine max HOM05D005713 ORTHO05D007751 3.7e-47 193.7 162 63.6
AUR62026246 Chenopodium quinoa HOM05D005713 ORTHO05D138102 4.1e-38 163.7 138 60.9
FAN19G2312 Fragaria x ananassa HOM05D005713 ORTHO05D007751 9.2e-38 162.5 131 64.1
Actinidia27913 Actinidia chinensis HOM05D005713 ORTHO05D007751 4.1e-30 137.1 86 77.9
Lj5g0025918 Lotus japonicus HOM05D005713 ORTHO05D236034 3.9e-28 130.6 105 60.0
SEGI_20066 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 2.6e-24 117.9 125 47.2
FvH4_1g29190 Fragaria vesca HOM05D005713 ORTHO05D007751 1.9e-22 111.7 105 60.0
FAN20G0809 Fragaria x ananassa HOM05D005713 ORTHO05D007751 1.3e-18 99.0 58 82.8
PGSC0003DMG400003326 Solanum tuberosum HOM05D005713 ORTHO05D021118 1.3e-12 79.0 126 42.1
QL11p041915 Quercus lobata HOM05D005713 ORTHO05D021118 9.6e-11 72.8 135 45.2
PGSC0003DMG400019020 Solanum tuberosum HOM05D005713 ORTHO05D021118 9.6e-11 72.8 135 37.8
Actinidia27912 Actinidia chinensis HOM05D005713 ORTHO05D021118 2.1e-10 71.6 126 44.4
Hma1.2p1_0066F.1_g036790 Hydrangea macrophylla HOM05D005713 ORTHO05D021118 3.8e-07 60.8 127 40.9
QL11p041469 Quercus lobata HOM05D005713 ORTHO05D338114 1.4e-06 58.9 38 71.1


User provided reference genes

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