Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.T013522 Populus trichocarpa HOM05D000054 ORTHO05D005077 1.7e-28 128.6 64 100.0
Potri.004G135500 Populus trichocarpa HOM05D000054 ORTHO05D000171 3.2e-11 71.2 51 76.5
Potri.T013544 Populus trichocarpa HOM05D000054 ORTHO05D005077 4.1e-11 70.9 51 74.5
Sabra04G0082600 Salix brachista HOM05D000054 ORTHO05D000171 4.1e-11 70.9 51 74.5
Manes.01G125200 Manihot esculenta HOM05D000054 ORTHO05D000171 2.7e-10 68.2 51 74.5
CSS0000613 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D000171 3.5e-10 67.8 51 74.5
Rhsim06G0122700 Rhododendron simsii HOM05D000054 ORTHO05D000171 7.8e-10 66.6 51 72.5
Aqoxy4G00205 Aquilegia oxysepala HOM05D000054 ORTHO05D000171 1.0e-09 66.2 48 72.9
Atru.chr6.3566 Acer truncatum HOM05D000054 ORTHO05D000171 1.3e-09 65.9 51 72.5
ClCG09G022240 Citrullus lanatus HOM05D000054 ORTHO05D000171 1.3e-09 65.9 51 72.5
MELO3C014454.2 Cucumis melo HOM05D000054 ORTHO05D000171 1.3e-09 65.9 51 72.5
CsaV3_6G037920 Cucumis sativus L. HOM05D000054 ORTHO05D000171 1.3e-09 65.9 51 72.5
Lj1C638T4 Lonicera japonica HOM05D000054 ORTHO05D005077 1.3e-09 65.9 51 70.6
TAR627G1015 Trochodendron aralioides HOM05D000054 ORTHO05D000171 1.3e-09 65.9 51 70.6
Gorai.006G003800 Gossypium raimondii HOM05D000054 ORTHO05D000171 1.7e-09 65.5 51 70.6
GSVIVG01020786001 Vitis vinifera HOM05D000054 ORTHO05D000171 1.7e-09 65.5 51 70.6
Sed0027821 Sechium edule HOM05D000054 ORTHO05D000171 3.0e-09 64.7 51 70.6
Ciclev10014129m.g Citrus clementina HOM05D000054 ORTHO05D000171 3.9e-09 64.3 51 68.6
Oeu032126.1 Olea europaea HOM05D000054 ORTHO05D000171 3.9e-09 64.3 51 70.6
Gohir.A09G003300 Gossypium hirsutum HOM05D000054 ORTHO05D000171 5.0e-09 63.9 51 68.6
Gohir.D09G003100 Gossypium hirsutum HOM05D000054 ORTHO05D000171 5.0e-09 63.9 51 68.6
MD09G1156900 Malus domestica HOM05D000054 ORTHO05D000171 5.0e-09 63.9 51 68.6
Nn6g34438 Nelumbo nucifera HOM05D000054 ORTHO05D000171 6.6e-09 63.5 51 66.7
Prupe.3G168800 Prunus persica HOM05D000054 ORTHO05D000171 6.6e-09 63.5 51 68.6
vmacro12430 Vaccinium macrocarpon HOM05D000054 ORTHO05D000171 6.6e-09 63.5 51 70.6
FvH4_6g37550 Fragaria vesca HOM05D000054 ORTHO05D000171 8.6e-09 63.2 51 66.7
FAN02G2360 Fragaria x ananassa HOM05D000054 ORTHO05D006003 8.6e-09 63.2 51 66.7
FAN14G1924 Fragaria x ananassa HOM05D000054 ORTHO05D006003 8.6e-09 63.2 51 66.7
FAN09G1464 Fragaria x ananassa HOM05D000054 ORTHO05D006003 1.1e-08 62.8 51 66.7
RcHm_v2.0_Chr2g0150431 Rosa chinensis HOM05D000054 ORTHO05D000171 1.1e-08 62.8 51 66.7
Ca_06296_v3 Cicer arietinum L. HOM05D000054 ORTHO05D000171 1.5e-08 62.4 48 70.8
COL.COLO4_33675 Corchorus olitorius HOM05D000054 ORTHO05D000171 1.5e-08 62.4 51 64.7
Lsat_1_v5_gn_4_26820 Lactuca sativa HOM05D000054 ORTHO05D000171 1.5e-08 62.4 51 66.7
Migut.H02115 Erythranthe guttata HOM05D000054 ORTHO05D000171 1.9e-08 62.0 51 66.7
PGR042G1578 Punica granatum HOM05D000054 ORTHO05D000171 1.9e-08 62.0 47 72.3
Duzib147G0789 Durio zibethinus HOM05D000054 ORTHO05D000171 2.5e-08 61.6 51 68.6
Glyma.02G288600 Glycine max HOM05D000054 ORTHO05D000171 3.3e-08 61.2 48 70.8
Glyma.14G026300 Glycine max HOM05D000054 ORTHO05D000171 3.3e-08 61.2 48 70.8
HanXRQChr01g0028671 Helianthus annuus HOM05D000054 ORTHO05D000171 3.3e-08 61.2 51 64.7
ECA234G0230 Erigeron canadensis HOM05D000054 ORTHO05D000171 4.3e-08 60.8 51 64.7
DCAR_013290 Daucus carota HOM05D000043 ORTHO05D000223 9.5e-08 59.7 51 62.7
Nitab4.5_0001121g0070 Nicotiana tabacum HOM05D000054 ORTHO05D000171 9.5e-08 59.7 49 67.3
Nitab4.5_0002737g0090 Nicotiana tabacum HOM05D000054 ORTHO05D000171 9.5e-08 59.7 49 67.3
Phvul.008G264400 Phaseolus vulgaris HOM05D000054 ORTHO05D000171 9.5e-08 59.7 48 68.8
Psat2g014400 Pisum sativum HOM05D000054 ORTHO05D000171 9.5e-08 59.7 49 67.3
VMungo0647G0385 Vigna mungo HOM05D000054 ORTHO05D000171 1.2e-07 59.3 48 66.7
MSTRG.15062 Avicennia marina HOM05D000054 ORTHO05D000171 1.6e-07 58.9 51 62.7
CiPaw.03G197500 Carya illinoinensis HOM05D000054 ORTHO05D000171 1.6e-07 58.9 47 66.0
LjContig00310g0009593 Lotus japonicus HOM05D000054 ORTHO05D000171 1.6e-07 58.9 48 66.7
TPR.G12642 Trifolium pratense HOM05D000054 ORTHO05D000171 1.6e-07 58.9 49 67.3
arahy.Tifrunner.gnm1.ann1.UC02TM Arachis hypogaea HOM05D000054 ORTHO05D000171 2.1e-07 58.5 47 68.1
arahy.Tifrunner.gnm1.ann1.WVV8YX Arachis hypogaea HOM05D000054 ORTHO05D000171 2.1e-07 58.5 47 68.1
SGA_v2.0_scaffold130G34209 Striga asiatica HOM05D000054 ORTHO05D000171 2.1e-07 58.5 51 60.8
Eucgr.A01951 Eucalyptus grandis HOM05D000054 ORTHO05D000171 2.8e-07 58.2 51 64.7
Solyc07g055810.3 Solanum lycopersicum HOM05D000054 ORTHO05D000171 2.8e-07 58.2 49 65.3
Sopen07g029180 Solanum pennellii HOM05D000054 ORTHO05D000171 2.8e-07 58.2 49 65.3
THA.LOC104800820 Tarenaya hassleriana HOM05D000054 ORTHO05D000171 2.8e-07 58.2 51 58.8
Lalb_Chr10g0106831 Lupinus albus HOM05D000054 ORTHO05D000171 3.6e-07 57.8 48 64.6
Medtr5g091950 Medicago truncatula HOM05D000054 ORTHO05D000171 3.6e-07 57.8 49 65.3
Actinidia12823 Actinidia chinensis HOM05D000054 ORTHO05D005793 4.7e-07 57.4 43 72.1
AL1G17840 Arabidopsis lyrata HOM05D000054 ORTHO05D000171 4.7e-07 57.4 51 58.8
AT1G07650 Arabidopsis thaliana HOM05D000054 ORTHO05D000171 4.7e-07 57.4 51 58.8
BcaC05g24681 Brassica carinata HOM05D000054 ORTHO05D000171 4.7e-07 57.4 51 58.8
A06p04810 Brassica napus HOM05D000054 ORTHO05D000171 4.7e-07 57.4 51 58.8
C05p05650 Brassica napus HOM05D000054 ORTHO05D000171 4.7e-07 57.4 51 58.8
BolC5t29336H Brassica oleracea HOM05D000054 ORTHO05D000171 4.7e-07 57.4 51 58.8
BraA06t23685Z Brassica rapa HOM05D000054 ORTHO05D000171 4.7e-07 57.4 51 58.8
Carub.0001s0698 Capsella rubella HOM05D000054 ORTHO05D000171 4.7e-07 57.4 51 58.8
Thhalv10006761m.g Eutrema salsugineum HOM05D000054 ORTHO05D000171 4.7e-07 57.4 51 58.8
MBI06_g08529_MAGBIO Magnolia biondii HOM05D000054 ORTHO05D000171 6.2e-07 57.0 49 65.3
Cc05_g09040 Coffea canephora HOM05D000054 ORTHO05D000171 8.1e-07 56.6 46 67.4
Aa31LG9G16620 Aethionema arabicum HOM05D000054 ORTHO05D000171 1.1e-06 56.2 51 56.9
Peaxi162Scf00154g00930 Petunia axillaris HOM05D000054 ORTHO05D000171 1.4e-06 55.8 46 65.2
Sp1g06370 Schrenkiella parvula HOM05D000054 ORTHO05D000171 1.4e-06 55.8 51 56.9
PGSC0003DMG400017291 Solanum tuberosum HOM05D000054 ORTHO05D000171 1.4e-06 55.8 49 61.2
CAN.G803.2 Capsicum annuum HOM05D000054 ORTHO05D000171 1.8e-06 55.5 49 61.2
QL08p043290 Quercus lobata HOM05D000054 ORTHO05D000171 1.8e-06 55.5 47 68.1
CARHR007440 Cardamine hirsuta HOM05D000054 ORTHO05D000171 2.3e-06 55.1 51 54.9
Duzib235G0732 Durio zibethinus HOM05D000054 ORTHO05D000171 6.8e-06 53.5 45 62.2


User provided reference genes

Program Settings