Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.T013000 Populus trichocarpa HOM05D005905 ORTHO05D005996 1.2e-231 806.2 441 100.0
Sabra19G0011400 Salix brachista HOM05D005905 ORTHO05D005996 4.6e-202 708.0 430 85.1
Sabra19G0001400 Salix brachista HOM05D005905 ORTHO05D005996 1.0e-201 706.8 430 84.9
COL.COLO4_12147 Corchorus olitorius HOM05D005905 ORTHO05D005996 2.6e-112 409.8 441 55.3
Manes.13G155500 Manihot esculenta HOM05D005905 ORTHO05D005996 1.7e-111 407.1 453 53.4
Thecc.01G145000 Theobroma cacao HOM05D005905 ORTHO05D005996 1.1e-107 394.4 451 52.5
Gorai.012G048200 Gossypium raimondii HOM05D005905 ORTHO05D005996 7.5e-104 381.7 447 51.5
Gohir.D04G042700 Gossypium hirsutum HOM05D005905 ORTHO05D005996 1.3e-103 380.9 450 51.8
Cpa.g.sc127.35 Carica papaya HOM05D005905 ORTHO05D005996 3.7e-103 379.4 440 51.4
Prupe.6G175200 Prunus persica HOM05D005905 ORTHO05D005996 6.0e-101 372.1 439 51.0
Gohir.A05G372800 Gossypium hirsutum HOM05D005905 ORTHO05D005996 2.3e-100 370.2 447 50.3
Hma1.2p1_0213F.1_g090480 Hydrangea macrophylla HOM05D005905 ORTHO05D005996 6.2e-98 362.1 441 49.9
QL10p035062 Quercus lobata HOM05D005905 ORTHO05D005996 4.0e-97 359.4 446 50.7
Manes.17G045200 Manihot esculenta HOM05D005905 ORTHO05D005996 8.9e-97 358.2 440 49.3
RcHm_v2.0_Chr2g0116171 Rosa chinensis HOM05D005905 ORTHO05D005996 2.0e-96 357.1 444 48.2
Atru.chr3.1412 Acer truncatum HOM05D005905 ORTHO05D005996 2.9e-95 353.2 455 47.7
MD15G1334300 Malus domestica HOM05D005905 ORTHO05D005996 3.7e-95 352.8 434 49.8
Nn5g27344 Nelumbo nucifera HOM05D005905 ORTHO05D005996 3.2e-94 349.7 458 46.7
AT5G23520 Arabidopsis thaliana HOM05D005905 ORTHO05D005996 2.3e-92 343.6 439 49.0
arahy.Tifrunner.gnm1.ann1.N289YY Arachis hypogaea HOM05D005905 ORTHO05D005996 1.1e-91 341.3 443 48.8
Haze_19376 Corylus avellana HOM05D005905 ORTHO05D005996 1.1e-91 341.3 428 50.7
TAR628G0724 Trochodendron aralioides HOM05D005905 ORTHO05D005996 1.1e-91 341.3 441 51.5
MBI03_g20878_MAGBIO Magnolia biondii HOM05D005905 ORTHO05D005996 2.1e-90 337.0 431 46.9
CiPaw.15G186200 Carya illinoinensis HOM05D005905 ORTHO05D005996 8.1e-90 335.1 434 46.1
Cfa020942 Carpinus fangiana HOM05D005905 ORTHO05D005996 1.1e-89 334.7 429 49.4
Lj4A826T50 Lonicera japonica HOM05D005905 ORTHO05D005996 2.4e-89 333.6 432 47.7
FvH4_1g22090 Fragaria vesca HOM05D005905 ORTHO05D005996 3.1e-89 333.2 437 48.1
AL6G34790 Arabidopsis lyrata HOM05D005905 ORTHO05D005996 1.2e-88 331.3 445 46.5
arahy.Tifrunner.gnm1.ann1.TUTH4E Arachis hypogaea HOM05D005905 ORTHO05D005996 2.2e-87 327.0 443 47.2
BcaNung03737 Brassica carinata HOM05D005905 ORTHO05D005996 6.4e-87 325.5 439 46.7
BolC7t44931H Brassica oleracea HOM05D005905 ORTHO05D005996 6.4e-87 325.5 439 46.7
Carub.0006s2129 Capsella rubella HOM05D005905 ORTHO05D005996 6.4e-87 325.5 444 46.6
TWI75G0068 Tripterygium wilfordii HOM05D005905 ORTHO05D005996 8.4e-87 325.1 428 48.1
GSVIVG01000261001 Vitis vinifera HOM05D005905 ORTHO05D005996 4.2e-86 322.8 216 75.5
C07p44070 Brassica napus HOM05D005905 ORTHO05D005996 9.3e-86 321.6 439 45.8
THA.LOC104800580 Tarenaya hassleriana HOM05D005905 ORTHO05D005996 9.3e-86 321.6 447 44.3
Aa31LG11G2910 Aethionema arabicum HOM05D005905 ORTHO05D005996 1.2e-85 321.2 437 45.5
CARHR190020 Cardamine hirsuta HOM05D005905 ORTHO05D005996 1.2e-85 321.2 434 46.1
vmacro12853 Vaccinium macrocarpon HOM05D005905 ORTHO05D005996 2.7e-85 320.1 445 45.2
Lj1g0015901 Lotus japonicus HOM05D005905 ORTHO05D005996 1.0e-84 318.2 450 45.6
Duzib187G1788 Durio zibethinus HOM05D005905 ORTHO05D005996 1.3e-84 317.8 429 48.5
A06p34480 Brassica napus HOM05D005905 ORTHO05D005996 1.7e-84 317.4 437 44.6
BraA06t26376Z Brassica rapa HOM05D005905 ORTHO05D005996 1.7e-84 317.4 437 44.6
PGR102G2263 Punica granatum HOM05D005905 ORTHO05D005996 3.0e-84 316.6 440 45.2
BcaNung03738 Brassica carinata HOM05D005905 ORTHO05D005996 1.1e-83 314.7 442 45.0
BcaNung03739 Brassica carinata HOM05D005905 ORTHO05D005996 1.1e-83 314.7 442 45.0
Sp2g23680 Schrenkiella parvula HOM05D005905 ORTHO05D005996 2.5e-83 313.5 443 45.8
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 3.3e-83 313.2 445 43.4
ClCG09G007860 Citrullus lanatus HOM05D005905 ORTHO05D005996 4.3e-83 312.8 453 44.4
Eucgr.H05059 Eucalyptus grandis HOM05D005905 ORTHO05D005996 5.6e-83 312.4 463 45.4
TPR.G29110 Trifolium pratense HOM05D005905 ORTHO05D005996 9.6e-83 311.6 445 45.4
MELO3C015720.2 Cucumis melo HOM05D005905 ORTHO05D005996 4.8e-82 309.3 459 42.3
Lalb_Chr19g0126361 Lupinus albus HOM05D005905 ORTHO05D005996 6.2e-82 308.9 436 44.5
Ca_08049_v3 Cicer arietinum L. HOM05D005905 ORTHO05D005996 2.4e-81 307.0 438 45.7
Ca_08055_v3 Cicer arietinum L. HOM05D005905 ORTHO05D005996 2.4e-81 307.0 438 45.7
Medtr7g081260 Medicago truncatula HOM05D005905 ORTHO05D005996 6.9e-81 305.4 454 45.2
CsaV3_7G027220 Cucumis sativus L. HOM05D005905 ORTHO05D005996 2.6e-80 303.5 476 42.4
Glyma.18G248600 Glycine max HOM05D005905 ORTHO05D005996 2.6e-80 303.5 438 45.2
Psat3g100200 Pisum sativum HOM05D005905 ORTHO05D005996 4.9e-79 299.3 460 44.1
Ciclev10025459m.g Citrus clementina HOM05D005905 ORTHO05D005996 4.6e-77 292.7 401 46.9
Hund21772 Selenicereus undatus HOM05D005905 ORTHO05D005996 1.3e-76 291.2 445 44.0
AUR62006929 Chenopodium quinoa HOM05D005905 ORTHO05D005996 3.0e-76 290.0 444 43.0
DCAR_019943 Daucus carota HOM05D005905 ORTHO05D005996 1.1e-75 288.1 445 41.8
Thhalv10004341m.g Eutrema salsugineum HOM05D005905 ORTHO05D005996 2.5e-75 287.0 419 43.9
Sed0023505 Sechium edule HOM05D005905 ORTHO05D005996 8.1e-74 282.0 393 45.0
VMungo1383G1950 Vigna mungo HOM05D005905 ORTHO05D005996 1.8e-73 280.8 425 43.3
Peaxi162Scf00353g00730 Petunia axillaris HOM05D005905 ORTHO05D005996 3.1e-73 280.0 480 39.2
AUR62000575 Chenopodium quinoa HOM05D005905 ORTHO05D005996 4.0e-73 279.6 464 42.7
Phvul.008G048800 Phaseolus vulgaris HOM05D005905 ORTHO05D005996 4.0e-73 279.6 441 42.9
CAN.G1921.10 Capsicum annuum HOM05D005905 ORTHO05D005996 6.9e-73 278.9 485 39.0
FAN19G0082 Fragaria x ananassa HOM05D005905 ORTHO05D005996 6.9e-73 278.9 437 42.8
SalBow8G4641 Salvia bowleyana HOM05D005905 ORTHO05D005996 6.9e-73 278.9 442 40.0
Aqoxy6G00049 Aquilegia oxysepala HOM05D005905 ORTHO05D005996 1.7e-71 274.2 449 41.6
EL10Ac8g19310 Beta vulgaris HOM05D005905 ORTHO05D005996 6.4e-71 272.3 443 41.3
EL10Ac4g09704 Beta vulgaris HOM05D005905 ORTHO05D005996 4.2e-70 269.6 447 40.3
PSO170G3497 Papaver somniferum HOM05D005905 ORTHO05D005996 7.1e-70 268.9 444 41.2
Glyma.09G244700 Glycine max HOM05D005905 ORTHO05D005996 3.5e-69 266.5 428 42.3
PSO017G4395 Papaver somniferum HOM05D005905 ORTHO05D005996 3.5e-69 266.5 444 41.9
FAN28G0415 Fragaria x ananassa HOM05D000290 ORTHO05D002418 4.6e-69 266.2 430 42.1
Cc07_g19890 Coffea canephora HOM05D005905 ORTHO05D005996 1.0e-68 265.0 469 39.9
Sopen05g034710 Solanum pennellii HOM05D005905 ORTHO05D005996 1.3e-68 264.6 479 39.7
PGSC0003DMG400023332 Solanum tuberosum HOM05D005905 ORTHO05D005996 6.7e-68 262.3 478 39.1
Sc09g0001990 Simmondsia chinensis HOM05D005905 ORTHO05D005996 8.7e-68 261.9 426 42.7
Nitab4.5_0000496g0260 Nicotiana tabacum HOM05D005905 ORTHO05D005996 1.9e-67 260.8 487 37.8
Migut.H02558 Erythranthe guttata HOM05D005905 ORTHO05D005996 3.3e-67 260.0 457 39.2
Solyc05g056320.3 Solanum lycopersicum HOM05D005905 ORTHO05D005996 1.3e-66 258.1 479 39.0
HanXRQChr04g0110551 Helianthus annuus HOM05D005905 ORTHO05D005996 2.1e-66 257.3 430 40.0
Nitab4.5_0010070g0020 Nicotiana tabacum HOM05D005905 ORTHO05D005996 3.7e-66 256.5 485 36.3
SGA_v2.0_scaffold12G06257 Striga asiatica HOM05D005905 ORTHO05D005996 4.5e-64 249.6 426 38.3
MSTRG.23227 Avicennia marina HOM05D005905 ORTHO05D005996 1.0e-63 248.4 442 37.1
Lsat_1_v5_gn_2_40320 Lactuca sativa HOM05D005905 ORTHO05D005996 1.7e-63 247.7 416 39.4
Dinv17124 Davidia involucrata HOM05D010983 ORTHO05D005996 2.5e-62 243.8 176 70.5
Os04g0442100 Oryza sativa ssp. japonica HOM05D005905 ORTHO05D005996 9.3e-62 241.9 436 37.8
CDE02G2172 Ceratophyllum demersum HOM05D005905 ORTHO05D005996 1.6e-61 241.1 448 39.5
CANSAT54G0939 Cannabis sativa HOM05D005905 ORTHO05D005996 1.5e-59 234.6 434 38.9
FAN26G1302 Fragaria x ananassa HOM05D000290 ORTHO05D002418 1.9e-59 234.2 431 39.9
Atru.chr3.1426 Acer truncatum HOM05D005905 ORTHO05D005996 3.7e-58 229.9 173 66.5
HPP92_011435 Vanilla planifolia HOM05D005905 ORTHO05D005996 1.8e-57 227.6 426 36.2
unitig_899.g14973 Utricularia gibba HOM05D005905 ORTHO05D005996 5.3e-57 226.1 452 36.1
FAN23G0918 Fragaria x ananassa HOM05D000290 ORTHO05D002418 1.2e-56 224.9 433 38.6
BcaNung03858 Brassica carinata HOM05D005905 ORTHO05D005996 1.1e-54 218.4 182 61.0
Cc07_g19900 Coffea canephora HOM05D005905 ORTHO05D005996 4.2e-54 216.5 358 39.7
SEGI_40650 Sequoiadendron giganteum HOM05D005905 ORTHO05D005996 1.0e-52 211.8 449 35.2
Potri.018G145524 Populus trichocarpa HOM05D005905 ORTHO05D005996 1.6e-45 188.0 132 97.0
ATR1089G162 Amborella trichopoda HOM05D005905 ORTHO05D005996 2.2e-39 167.5 181 54.1
SHI08855 Sapria himalayana HOM05D005905 ORTHO05D005996 8.5e-39 165.6 241 43.6
Mapoly0015s0082 Marchantia polymorpha HOM05D005905 ORTHO05D005996 7.4e-35 152.5 213 42.3
Pp3c18_21070 Physcomitrium patens HOM05D005905 ORTHO05D005996 2.8e-34 150.6 333 35.1
Dinv17121 Davidia involucrata HOM05D005905 ORTHO05D005996 1.3e-31 141.7 269 38.3
Ah.06g188320 Amaranthus hybridus HOM05D005905 ORTHO05D005996 6.5e-31 139.4 439 31.2
Hma1.2p1_0213F.1_g090490 Hydrangea macrophylla HOM05D005905 ORTHO05D005996 1.1e-27 128.6 260 38.5
Ah.06g188350 Amaranthus hybridus HOM05D005905 ORTHO05D005996 1.5e-27 128.3 196 40.8
Pp3c21_2450 Physcomitrium patens HOM05D005905 ORTHO05D005996 1.5e-27 128.3 218 39.4
QL05p019434 Quercus lobata HOM05D005905 ORTHO05D005996 4.4e-27 126.7 197 42.1
HPP92_011427 Vanilla planifolia HOM05D005905 ORTHO05D005996 1.7e-26 124.8 137 49.6
AagrBONN_evm.TU.Sc2ySwM_368.3232 Anthoceros agrestis HOM05D005905 ORTHO05D005996 2.2e-26 124.4 208 38.0
QL09p047332 Quercus lobata HOM05D005905 ORTHO05D005996 1.8e-25 121.3 196 40.8
Lalb_Chr20g0117801 Lupinus albus HOM05D005905 ORTHO05D005996 5.3e-25 119.8 194 38.7
Lalb_Chr20g0117861 Lupinus albus HOM05D005905 ORTHO05D005996 5.3e-25 119.8 194 38.7
Medtr6g034130 Medicago truncatula HOM05D005905 ORTHO05D005996 5.2e-20 103.2 182 35.2
QL09p028391 Quercus lobata HOM05D005905 ORTHO05D005996 1.5e-19 101.7 193 37.8
Medtr6g034165 Medicago truncatula HOM05D005905 ORTHO05D005996 8.3e-18 95.9 197 30.5
TPR.G33754 Trifolium pratense HOM05D005905 ORTHO05D005996 2.0e-16 91.3 151 39.7
SMO239G0053 Selaginella moellendorffii HOM05D005905 ORTHO05D005996 3.5e-16 90.5 189 34.4
Lj3g0014044 Lotus japonicus HOM05D005905 ORTHO05D005996 4.5e-16 90.1 138 38.4
Ah.14g088890 Amaranthus hybridus HOM05D005905 ORTHO05D005996 1.0e-15 89.0 195 32.3
Atru.chr3.1427 Acer truncatum HOM05D005905 ORTHO05D005996 1.6e-13 81.6 164 38.4
Ah.06g188340 Amaranthus hybridus HOM05D005905 ORTHO05D005996 2.1e-13 81.3 173 34.7
arahy.Tifrunner.gnm1.ann1.F86J4F Arachis hypogaea HOM05D005905 ORTHO05D005996 4.4e-11 73.6 50 72.0
Ah.06g188380 Amaranthus hybridus HOM05D005905 ORTHO05D005996 9.8e-11 72.4 181 28.7
ATR1089G052 Amborella trichopoda HOM05D005905 ORTHO05D005996 2.5e-06 57.8 185 28.6


User provided reference genes

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