Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.019G133101 Populus trichocarpa HOM05D004274 ORTHO05D004980 2.2e-48 195.3 98 100.0
Sabra19G0129300 Salix brachista HOM05D004274 ORTHO05D004980 1.1e-36 156.4 89 86.5
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 5.0e-16 87.8 85 56.5
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 1.2e-14 83.2 54 72.2
Hund24328 Selenicereus undatus HOM05D004274 ORTHO05D004980 2.7e-14 82.0 67 64.2
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 1.0e-13 80.1 63 68.3
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 5.2e-13 77.8 85 49.4
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 2.6e-12 75.5 43 79.1
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 2.6e-12 75.5 55 61.8
QL01p023462 Quercus lobata HOM05D004274 ORTHO05D004980 3.4e-12 75.1 60 58.3
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 5.7e-12 74.3 42 78.6
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 5.7e-12 74.3 65 58.5
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 7.5e-12 73.9 85 50.6
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 7.5e-12 73.9 56 58.9
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 9.8e-12 73.6 47 68.1
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 9.8e-12 73.6 47 68.1
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 9.8e-12 73.6 69 55.1
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 9.8e-12 73.6 57 64.9
FvH4_3g41190 Fragaria vesca HOM05D004274 ORTHO05D004980 1.7e-11 72.8 51 68.6
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 2.2e-11 72.4 53 62.3
Solyc09g018650.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 2.2e-11 72.4 55 60.0
HPP92_015443 Vanilla planifolia HOM05D004274 ORTHO05D004980 3.7e-11 71.6 92 44.6
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 4.8e-11 71.2 40 77.5
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 4.8e-11 71.2 40 77.5
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 6.3e-11 70.9 53 60.4
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 6.3e-11 70.9 88 46.6
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 6.3e-11 70.9 73 50.7
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 6.3e-11 70.9 39 79.5
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 8.3e-11 70.5 36 86.1
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 1.1e-10 70.1 38 84.2
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 1.1e-10 70.1 82 46.3
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 1.4e-10 69.7 37 81.1
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 1.4e-10 69.7 49 65.3
CDE08G1045 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 1.8e-10 69.3 54 61.1
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 1.8e-10 69.3 43 74.4
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 1.8e-10 69.3 82 48.8
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 2.4e-10 68.9 56 55.4
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 2.4e-10 68.9 41 73.2
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 3.1e-10 68.6 39 74.4
Actinidia34514 Actinidia chinensis HOM05D004274 ORTHO05D004980 4.1e-10 68.2 39 82.1
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 4.1e-10 68.2 51 64.7
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 5.4e-10 67.8 55 61.8
Dinv28765 Davidia involucrata HOM05D004274 ORTHO05D004980 5.4e-10 67.8 54 61.1
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 5.4e-10 67.8 51 62.7
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 7.0e-10 67.4 103 42.7
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 1.2e-09 66.6 49 63.3
ClCG10G000760 Citrullus lanatus HOM05D004274 ORTHO05D004980 1.2e-09 66.6 56 57.1
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 1.2e-09 66.6 64 54.7
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 1.2e-09 66.6 41 70.7
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 1.6e-09 66.2 65 58.5
RcHm_v2.0_Chr5g0074021 Rosa chinensis HOM05D004274 ORTHO05D004980 1.6e-09 66.2 58 58.6
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 2.7e-09 65.5 33 87.9
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 2.7e-09 65.5 42 69.0
MSTRG.21280 Avicennia marina HOM05D004274 ORTHO05D004980 3.5e-09 65.1 38 71.1
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 3.5e-09 65.1 56 58.9
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 4.5e-09 64.7 75 46.7
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 4.5e-09 64.7 41 65.9
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 5.9e-09 64.3 49 59.2
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 5.9e-09 64.3 35 80.0
MSTRG.12721 Avicennia marina HOM05D004274 ORTHO05D004980 7.7e-09 63.9 35 77.1
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 7.7e-09 63.9 52 57.7
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 7.7e-09 63.9 36 77.8
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 1.0e-08 63.5 44 63.6
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 1.0e-08 63.5 49 57.1
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 1.0e-08 63.5 54 63.0
MSTRG.18523 Avicennia marina HOM05D004274 ORTHO05D004980 1.3e-08 63.2 90 41.1
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 1.3e-08 63.2 36 80.6
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 1.3e-08 63.2 52 57.7
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.3e-08 63.2 36 75.0
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 1.3e-08 63.2 41 65.9
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 1.3e-08 63.2 74 48.6
HanXRQChr08g0231131 Helianthus annuus HOM05D004274 ORTHO05D004980 1.7e-08 62.8 41 70.7
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 1.7e-08 62.8 37 70.3
SGA_v2.0_scaffold8G04481 Striga asiatica HOM05D004274 ORTHO05D004980 1.7e-08 62.8 62 50.0
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 2.2e-08 62.4 34 79.4
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 2.2e-08 62.4 39 69.2
MD03G1046400 Malus domestica HOM05D004274 ORTHO05D004980 2.2e-08 62.4 39 69.2
Mapoly0107s0014 Marchantia polymorpha HOM05D004274 ORTHO05D004980 2.2e-08 62.4 61 52.5
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 2.2e-08 62.4 39 74.4
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 2.9e-08 62.0 46 65.2
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 6.5e-08 60.8 50 56.0
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 1.1e-07 60.1 56 53.6
CANSAT54G0115 Cannabis sativa HOM05D004274 ORTHO05D004980 1.9e-07 59.3 35 68.6
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 2.5e-07 58.9 66 53.0
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 3.2e-07 58.5 44 59.1
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 4.2e-07 58.2 35 77.1
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 5.5e-07 57.8 66 53.0
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 5.5e-07 57.8 35 71.4
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 7.2e-07 57.4 35 68.6
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 7.2e-07 57.4 35 71.4
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 7.2e-07 57.4 41 58.5
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 1.2e-06 56.6 35 68.6
Psat5g146320 Pisum sativum HOM05D004274 ORTHO05D004980 1.6e-06 56.2 44 59.1
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 2.1e-06 55.8 53 45.3
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 2.1e-06 55.8 35 68.6
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 2.1e-06 55.8 34 73.5
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05D004274 ORTHO05D004980 2.7e-06 55.5 40 60.0
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 2.7e-06 55.5 33 72.7
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 3.6e-06 55.1 88 38.6
Medtr3g063030 Medicago truncatula HOM05D004274 ORTHO05D004980 3.6e-06 55.1 40 62.5
TPR.G37420 Trifolium pratense HOM05D004274 ORTHO05D004980 3.6e-06 55.1 40 62.5
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 6.1e-06 54.3 35 65.7
CBR_g39157 Chara braunii HOM05D004274 ORTHO05D004980 8.0e-06 53.9 40 57.5


User provided reference genes

Program Settings