Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.019G133000 Populus trichocarpa HOM05D006472 ORTHO05D008222 0.0e+00 1420.6 726 100.0
Sabra19G0129200 Salix brachista HOM05D006472 ORTHO05D008222 0.0e+00 1384.4 736 96.7
Manes.18G123800 Manihot esculenta HOM05D006472 ORTHO05D008222 0.0e+00 1223.8 726 85.8
QL01p023614 Quercus lobata HOM05D006472 ORTHO05D008222 0.0e+00 1116.3 725 77.8
Atru.chr10.2355 Acer truncatum HOM05D006472 ORTHO05D008222 0.0e+00 1113.2 726 77.3
Cfa011860 Carpinus fangiana HOM05D006472 ORTHO05D008222 0.0e+00 1106.7 730 76.8
Thecc.09G366100 Theobroma cacao HOM05D006472 ORTHO05D008222 0.0e+00 1105.5 732 77.3
CANSAT54G2825 Cannabis sativa HOM05D006472 ORTHO05D008222 0.0e+00 1100.9 728 76.2
GSVIVG01024525001 Vitis vinifera HOM05D006472 ORTHO05D008222 0.0e+00 1095.1 726 77.0
CiPaw.13G059900 Carya illinoinensis HOM05D006472 ORTHO05D008222 0.0e+00 1091.3 729 76.5
Prupe.6G038300 Prunus persica HOM05D006472 ORTHO05D008222 0.0e+00 1088.9 726 76.0
Glyma.02G238400 Glycine max HOM05D006472 ORTHO05D008222 0.0e+00 1082.0 726 75.3
Glyma.14G207300 Glycine max HOM05D006472 ORTHO05D008222 0.0e+00 1077.0 726 74.8
Phvul.008G243600 Phaseolus vulgaris HOM05D006472 ORTHO05D008222 1.5e-311 1072.4 726 74.4
VMungo0647G2416 Vigna mungo HOM05D006472 ORTHO05D008222 2.0e-311 1072.0 725 74.6
TAR369G0765 Trochodendron aralioides HOM05D006472 ORTHO05D008222 9.9e-311 1069.7 721 73.9
CSS0014639 Camellia sinensis var. sinensis HOM05D006472 ORTHO05D008222 2.9e-310 1068.1 727 75.8
TWI31G0750 Tripterygium wilfordii HOM05D006472 ORTHO05D008222 4.9e-310 1067.4 733 75.9
Actinidia34511 Actinidia chinensis HOM05D006472 ORTHO05D008222 2.1e-308 1062.0 726 75.2
MELO3C013696.2 Cucumis melo HOM05D006472 ORTHO05D008222 1.3e-307 1059.3 726 74.5
Lalb_Chr10g0103951 Lupinus albus HOM05D006472 ORTHO05D008222 1.3e-307 1059.3 727 73.6
Dinv28760 Davidia involucrata HOM05D006472 ORTHO05D008222 6.6e-307 1057.0 699 77.0
MD03G1047100 Malus domestica HOM05D006472 ORTHO05D008222 1.8e-304 1048.9 726 73.4
Haze_24495 Corylus avellana HOM05D006472 ORTHO05D008222 6.9e-304 1047.0 838 66.5
RcHm_v2.0_Chr5g0073921 Rosa chinensis HOM05D006472 ORTHO05D008222 9.0e-304 1046.6 726 73.3
Gohir.D03G146000 Gossypium hirsutum HOM05D006472 ORTHO05D008222 3.4e-303 1044.6 729 73.5
Duzib168G0790 Durio zibethinus HOM05D006472 ORTHO05D008222 9.9e-303 1043.1 731 73.9
FvH4_3g41130 Fragaria vesca HOM05D006472 ORTHO05D008222 9.9e-303 1043.1 726 72.3
FAN11G3159 Fragaria x ananassa HOM05D006472 ORTHO05D008222 1.7e-302 1042.3 726 72.2
Nn5g26767 Nelumbo nucifera HOM05D006472 ORTHO05D008222 2.4e-301 1038.5 726 72.5
FAN16G1417 Fragaria x ananassa HOM05D006472 ORTHO05D008222 3.2e-301 1038.1 726 72.0
FAN21G1719 Fragaria x ananassa HOM05D006472 ORTHO05D008222 7.1e-301 1036.9 726 71.8
vmacro14657 Vaccinium macrocarpon HOM05D006472 ORTHO05D008222 7.1e-301 1036.9 726 73.7
Gohir.A03G022700 Gossypium hirsutum HOM05D006472 ORTHO05D008222 1.0e-299 1033.1 716 73.3
Ca_05732_v3 Cicer arietinum L. HOM05D006472 ORTHO05D008222 6.6e-299 1030.4 728 71.8
LjContig00141g0008115 Lotus japonicus HOM05D006472 ORTHO05D008222 1.9e-298 1028.9 713 72.2
COL.COLO4_08158 Corchorus olitorius HOM05D006472 ORTHO05D008222 9.6e-298 1026.5 734 73.2
Eucgr.J01848 Eucalyptus grandis HOM05D006472 ORTHO05D008222 1.3e-297 1026.2 730 72.1
THA.LOC104798389 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 1.3e-297 1026.2 727 70.7
Hma1.2p1_0170F.1_g075410 Hydrangea macrophylla HOM05D006472 ORTHO05D008222 6.9e-296 1020.4 726 72.9
EL10Ac8g20566 Beta vulgaris HOM05D006472 ORTHO05D008222 3.2e-293 1011.5 726 70.2
Rhsim01G0245200 Rhododendron simsii HOM05D006472 ORTHO05D008222 3.2e-293 1011.5 795 67.7
TPR.G15403 Trifolium pratense HOM05D006472 ORTHO05D008222 1.0e-291 1006.5 716 70.8
Medtr5g075970 Medicago truncatula HOM05D006472 ORTHO05D008222 2.5e-290 1001.9 731 69.9
FAN25G3237 Fragaria x ananassa HOM05D006472 ORTHO05D008222 3.7e-289 998.0 726 70.0
Psat2g049480 Pisum sativum HOM05D006472 ORTHO05D008222 4.0e-288 994.6 724 69.6
ECA248G1121 Erigeron canadensis HOM05D006472 ORTHO05D008222 1.3e-286 989.6 724 68.8
HanXRQChr11g0338241 Helianthus annuus HOM05D006472 ORTHO05D008222 2.5e-285 985.3 713 69.8
Lj2C1106G3 Lonicera japonica HOM05D006472 ORTHO05D008222 2.5e-285 985.3 726 69.8
AL8G25600 Arabidopsis lyrata HOM05D006472 ORTHO05D008222 1.6e-284 982.6 725 68.1
Sp6g13540 Schrenkiella parvula HOM05D006472 ORTHO05D008222 3.5e-284 981.5 725 67.4
Lsat_1_v5_gn_5_176920 Lactuca sativa HOM05D006472 ORTHO05D008222 4.6e-284 981.1 713 68.2
AUR62039472 Chenopodium quinoa HOM05D006472 ORTHO05D008222 6.0e-284 980.7 726 69.4
PSO384G2469 Papaver somniferum HOM05D006472 ORTHO05D008222 1.5e-282 976.1 724 68.6
Carub.0008s1136 Capsella rubella HOM05D006472 ORTHO05D008222 3.3e-282 974.9 725 67.2
AT5G51340 Arabidopsis thaliana HOM05D006472 ORTHO05D008222 5.7e-282 974.2 726 67.5
BcaC04g20686 Brassica carinata HOM05D006472 ORTHO05D008222 5.7e-282 974.2 724 67.3
C09p40600 Brassica napus HOM05D006472 ORTHO05D008222 5.7e-282 974.2 724 67.3
BolC9t56942H Brassica oleracea HOM05D006472 ORTHO05D008222 5.7e-282 974.2 724 67.3
arahy.Tifrunner.gnm1.ann1.LP7W2Z Arachis hypogaea HOM05D006472 ORTHO05D008222 1.6e-281 972.6 722 69.1
PSO339G5368 Papaver somniferum HOM05D006472 ORTHO05D008222 2.1e-281 972.2 724 68.2
Aa31LG3G7830 Aethionema arabicum HOM05D006472 ORTHO05D008222 2.8e-281 971.8 726 67.8
A10p09080 Brassica napus HOM05D006472 ORTHO05D008222 2.8e-281 971.8 725 67.3
BraA10t42993Z Brassica rapa HOM05D006472 ORTHO05D008222 8.2e-281 970.3 725 67.2
BcaB08g35491 Brassica carinata HOM05D006472 ORTHO05D008222 1.4e-280 969.5 723 66.7
CDE07G0456 Ceratophyllum demersum HOM05D006472 ORTHO05D008222 1.4e-280 969.5 726 66.7
Solyc09g055340.4 Solanum lycopersicum HOM05D006472 ORTHO05D008222 1.8e-280 969.1 720 67.4
PGR119G0508 Punica granatum HOM05D006472 ORTHO05D008222 7.6e-279 963.8 728 69.2
Sopen09g017740 Solanum pennellii HOM05D006472 ORTHO05D008222 4.3e-274 948.0 716 66.3
Ah.09g233500 Amaranthus hybridus HOM05D006472 ORTHO05D008222 7.4e-274 947.2 726 67.6
Thhalv10012792m.g Eutrema salsugineum HOM05D006472 ORTHO05D008222 2.8e-273 945.3 725 65.5
Sed0004215 Sechium edule HOM05D006472 ORTHO05D008222 6.3e-273 944.1 621 76.2
arahy.Tifrunner.gnm1.ann1.9899SL Arachis hypogaea HOM05D006472 ORTHO05D008222 1.2e-271 939.9 726 67.2
Aqoxy2G00669 Aquilegia oxysepala HOM05D006472 ORTHO05D008222 1.1e-269 933.3 726 65.4
Migut.N00711 Erythranthe guttata HOM05D006472 ORTHO05D008222 6.7e-267 924.1 727 65.9
SGA_v2.0_scaffold120G33005 Striga asiatica HOM05D006472 ORTHO05D008222 1.3e-265 919.8 734 64.2
Sc11g0008920 Simmondsia chinensis HOM05D006472 ORTHO05D008222 9.1e-256 887.1 652 69.9
HPP92_024263 Vanilla planifolia HOM05D006472 ORTHO05D008222 2.7e-244 849.0 725 60.4
HPP92_024257 Vanilla planifolia HOM05D006472 ORTHO05D008222 6.8e-243 844.3 725 59.9
ATR1127G223 Amborella trichopoda HOM05D006472 ORTHO05D008222 8.5e-238 827.4 726 59.9
Ciclev10000965m.g Citrus clementina HOM05D006472 ORTHO05D008222 6.4e-217 758.1 479 77.5
DCAR_012719 Daucus carota HOM05D006472 ORTHO05D008222 5.4e-216 755.0 590 66.1
Medtr6g049450 Medicago truncatula HOM05D006472 ORTHO05D008222 7.5e-210 734.6 663 58.8
Zm00001eb193950 Zea mays HOM05D006472 ORTHO05D008222 5.1e-198 695.3 735 52.9
Mapoly0020s0144 Marchantia polymorpha HOM05D006472 ORTHO05D008222 8.7e-182 641.3 665 51.7
CsaV3_3G000010 Cucumis sativus L. HOM05D006472 ORTHO05D008222 2.8e-180 636.3 440 76.1
Oeu034746.1 Olea europaea HOM05D006472 ORTHO05D008222 1.8e-179 633.6 473 68.7
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 5.8e-178 628.6 663 53.1
SMO119G0519 Selaginella moellendorffii HOM05D006472 ORTHO05D008222 6.4e-177 625.2 662 51.7
Pp3c10_12710 Physcomitrium patens HOM05D006472 ORTHO05D008222 3.0e-174 616.3 670 49.1
Pp3c26_4960 Physcomitrium patens HOM05D006472 ORTHO05D008222 3.0e-174 616.3 670 49.4
Nitab4.5_0002030g0020 Nicotiana tabacum HOM05D006472 ORTHO05D008222 3.7e-172 609.4 590 55.1
THA.LOC104824615 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 9.0e-171 604.7 430 68.4
THA.LOC104824654 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 2.1e-151 540.4 392 67.6
Peaxi162Scf00293g00816 Petunia axillaris HOM05D006472 ORTHO05D008222 3.9e-150 536.2 428 64.7
AUR62041830 Chenopodium quinoa HOM05D006472 ORTHO05D008222 3.1e-147 526.6 506 56.3
AagrBONN_evm.TU.Sc2ySwM_117.3516 Anthoceros agrestis HOM05D006472 ORTHO05D008222 8.5e-145 518.5 668 43.9
ClCG10G000020 Citrullus lanatus HOM05D006472 ORTHO05D008222 7.5e-133 478.8 375 64.3
Cpa.g.sc2.260 Carica papaya HOM05D006472 ORTHO05D008222 4.1e-131 473.0 377 65.5
Nitab4.5_0000195g0150 Nicotiana tabacum HOM05D006472 ORTHO05D008222 1.7e-124 451.1 479 51.8
CBR_g46787 Chara braunii HOM05D006472 ORTHO05D008222 1.0e-121 441.8 661 38.0
SHI30108 Sapria himalayana HOM05D006714 ORTHO05D008103 1.5e-120 438.0 572 47.6
Cpa.g.sc2.261 Carica papaya HOM05D006472 ORTHO05D008222 3.2e-120 436.8 314 74.5
Os04g0347600 Oryza sativa ssp. japonica HOM05D006472 ORTHO05D008222 1.1e-115 421.8 343 65.3
ClCG10G000010 Citrullus lanatus HOM05D006472 ORTHO05D008222 5.4e-115 419.5 328 70.1
Cc01_g15530 Coffea canephora HOM05D006472 ORTHO05D008222 8.9e-110 402.1 297 65.7
CARHR264090 Cardamine hirsuta HOM05D006472 ORTHO05D008222 1.3e-108 398.3 298 69.8
Cc01_g15520 Coffea canephora HOM05D006472 ORTHO05D008222 2.3e-97 360.9 260 70.8
Nn5g26768 Nelumbo nucifera HOM05D006472 ORTHO05D008222 6.8e-94 349.4 228 77.2
Atru.chr10.2358 Acer truncatum HOM05D006472 ORTHO05D008222 3.9e-89 333.6 236 67.4
Nitab4.5_0001025g0010 Nicotiana tabacum HOM05D006472 ORTHO05D008222 6.2e-71 273.1 206 61.7
Ciclev10004061m.g Citrus clementina HOM05D006472 ORTHO05D008222 2.8e-63 247.7 155 81.3
Gorai.003G153200 Gossypium raimondii HOM05D006472 ORTHO05D008222 5.8e-61 240.0 163 77.3
Haze_06065 Corylus avellana HOM05D000100 ORTHO05D000052 7.6e-45 186.4 151 60.3
SEGI_25118 Sequoiadendron giganteum HOM05D006472 ORTHO05D008222 3.6e-42 177.6 137 62.0
MCO15G146 Micromonas commoda HOM05D006472 ORTHO05D008222 1.1e-27 129.4 762 23.6
Peaxi162Scf00293g00815 Petunia axillaris HOM05D006472 ORTHO05D008222 3.5e-21 107.8 103 56.3
SEGI_41332 Sequoiadendron giganteum HOM05D006472 ORTHO05D008222 5.9e-21 107.1 71 74.6
Lsat_1_v5_gn_5_131141 Lactuca sativa HOM05D006472 ORTHO05D008222 8.8e-17 93.2 69 66.7
Cre12.g532650 Chlamydomonas reinhardtii HOM05D006472 ORTHO05D008222 1.8e-14 85.5 694 21.6
Actinidia23826 Actinidia chinensis HOM05D006472 ORTHO05D008222 8.5e-12 76.6 69 68.1
Medtr5g078560 Medicago truncatula HOM05D006472 ORTHO05D008222 1.4e-09 69.3 45 73.3
Medtr6g051400 Medicago truncatula HOM05D006472 ORTHO05D008222 1.4e-06 59.3 52 51.9


User provided reference genes

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