Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 0.0e+00 1869.4 1011 100.0
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1754.6 1014 92.4
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1747.3 1022 91.7
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 0.0e+00 1687.2 1012 88.6
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1639.8 1049 84.5
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 0.0e+00 1491.5 1027 77.9
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 0.0e+00 1454.5 1018 75.1
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 0.0e+00 1432.2 1017 74.4
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 0.0e+00 1425.6 1021 74.3
Thecc.09G360800 Theobroma cacao HOM05D003801 ORTHO05D004812 0.0e+00 1424.1 1024 73.8
RcHm_v2.0_Chr5g0072271 Rosa chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1422.5 1020 73.9
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 0.0e+00 1419.4 1016 74.2
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 0.0e+00 1417.5 1015 73.8
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 0.0e+00 1417.5 1010 75.6
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 0.0e+00 1417.5 1016 73.5
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 0.0e+00 1416.4 1016 73.4
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 0.0e+00 1410.2 1027 74.6
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 0.0e+00 1410.2 1022 74.9
MD03G1058800 Malus domestica HOM05D003801 ORTHO05D004812 0.0e+00 1409.4 1014 75.0
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 0.0e+00 1409.0 1026 75.0
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 0.0e+00 1407.1 1016 73.3
CsaV3_1G036690 Cucumis sativus L. HOM05D003801 ORTHO05D004812 0.0e+00 1404.4 1022 74.5
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 0.0e+00 1400.6 1050 73.1
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 0.0e+00 1397.9 1025 74.2
Sed0013919 Sechium edule HOM05D003801 ORTHO05D004812 0.0e+00 1395.6 1022 71.9
FvH4_3g40080 Fragaria vesca HOM05D003801 ORTHO05D004812 0.0e+00 1392.9 1020 72.5
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 0.0e+00 1386.7 1022 71.4
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 0.0e+00 1381.3 1019 73.5
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 0.0e+00 1379.0 1026 72.9
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1378.2 1015 73.2
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 0.0e+00 1373.2 1018 72.3
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 0.0e+00 1366.7 1021 72.2
MD11G1060900 Malus domestica HOM05D003801 ORTHO05D004812 0.0e+00 1365.1 1014 73.6
FAN21G1607 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1364.0 1028 71.0
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1363.2 1012 72.7
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 0.0e+00 1362.4 1019 72.2
FAN11G2663 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1362.4 1028 70.9
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 0.0e+00 1361.3 998 73.2
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 0.0e+00 1360.1 1019 72.4
QL01p018072 Quercus lobata HOM05D003801 ORTHO05D004812 0.0e+00 1356.7 1019 72.5
FAN16G2780 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1355.9 1056 71.2
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 0.0e+00 1355.5 1014 72.4
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 0.0e+00 1354.7 1012 70.3
Sc17g0002560 Simmondsia chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1352.8 1008 73.2
Duzib168G2305 Durio zibethinus HOM05D003801 ORTHO05D004812 0.0e+00 1349.0 1016 71.4
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 0.0e+00 1345.9 1011 70.2
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 0.0e+00 1335.9 1035 70.8
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 0.0e+00 1332.0 1012 70.7
FAN25G2625 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1328.5 1022 71.6
COL.COLO4_11183 Corchorus olitorius HOM05D003801 ORTHO05D004812 0.0e+00 1327.4 968 72.0
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 0.0e+00 1324.7 1012 69.1
Medtr5g074690 Medicago truncatula HOM05D003801 ORTHO05D004812 0.0e+00 1317.8 1012 70.1
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 0.0e+00 1313.9 1025 67.9
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1312.0 1024 68.1
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 0.0e+00 1310.8 1034 67.4
EL10Ac7g15867 Beta vulgaris HOM05D003801 ORTHO05D004812 0.0e+00 1309.7 1024 67.4
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 0.0e+00 1309.3 1081 66.8
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 0.0e+00 1309.3 1024 68.1
Psat2g052760 Pisum sativum HOM05D003801 ORTHO05D004812 0.0e+00 1306.2 1014 67.7
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1305.4 1024 67.5
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 0.0e+00 1305.0 1000 68.6
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 0.0e+00 1304.3 1025 67.0
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 0.0e+00 1303.9 1000 68.5
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 0.0e+00 1303.5 1021 68.0
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 0.0e+00 1301.6 1025 67.4
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 0.0e+00 1297.7 1025 67.2
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 0.0e+00 1297.3 1024 67.6
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 0.0e+00 1295.4 1020 68.7
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 0.0e+00 1295.0 1023 67.9
PSO339G1799 Papaver somniferum HOM05D003801 ORTHO05D004812 0.0e+00 1293.1 1028 68.1
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 0.0e+00 1291.2 1026 66.7
PSO384G0852 Papaver somniferum HOM05D003801 ORTHO05D004812 0.0e+00 1290.0 1026 68.3
HanXRQChr08g0228441 Helianthus annuus HOM05D003801 ORTHO05D004812 0.0e+00 1286.6 1039 66.4
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 0.0e+00 1285.8 1042 67.3
Lsat_1_v5_gn_9_14381 Lactuca sativa HOM05D003801 ORTHO05D004812 0.0e+00 1283.5 1031 68.4
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 0.0e+00 1282.7 1017 67.5
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 0.0e+00 1279.2 1038 68.4
Peaxi162Scf00095g00168 Petunia axillaris HOM05D003801 ORTHO05D004812 0.0e+00 1278.1 1017 69.2
AUR62036227 Chenopodium quinoa HOM05D003801 ORTHO05D004812 0.0e+00 1277.7 1022 66.2
ECA247G0395 Erigeron canadensis HOM05D003801 ORTHO05D004812 0.0e+00 1277.7 1022 66.7
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1276.9 1068 65.0
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 0.0e+00 1269.6 1024 67.9
AUR62009720 Chenopodium quinoa HOM05D003801 ORTHO05D004812 0.0e+00 1262.3 942 69.6
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 0.0e+00 1261.9 1010 65.6
Sopen09g014770 Solanum pennellii HOM05D003801 ORTHO05D004812 0.0e+00 1252.3 1020 67.1
Solyc09g031780.3 Solanum lycopersicum HOM05D003801 ORTHO05D004812 0.0e+00 1250.0 1020 66.9
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 0.0e+00 1246.1 1057 63.9
Ca_13017_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 0.0e+00 1246.1 1012 66.4
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1239.9 1013 67.5
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 0.0e+00 1238.8 947 68.4
Psat5g150840 Pisum sativum HOM05D003801 ORTHO05D004812 0.0e+00 1238.0 1002 65.3
ATR0584G141 Amborella trichopoda HOM05D003801 ORTHO05D004812 0.0e+00 1231.1 1012 66.0
TPR.G24942 Trifolium pratense HOM05D003801 ORTHO05D004812 0.0e+00 1228.0 949 66.9
Hund05047 Selenicereus undatus HOM05D003801 ORTHO05D004812 0.0e+00 1227.6 971 66.3
Actinidia32598 Actinidia chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1218.8 1039 64.1
Lj1A123G49 Lonicera japonica HOM05D003801 ORTHO05D004812 0.0e+00 1213.7 1029 64.1
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 0.0e+00 1213.0 921 70.0
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 0.0e+00 1204.9 966 66.7
Aqoxy2G00749 Aquilegia oxysepala HOM05D003801 ORTHO05D004812 0.0e+00 1198.0 1030 63.3
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 0.0e+00 1172.1 795 76.4
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 0.0e+00 1155.6 792 77.7
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 0.0e+00 1142.5 789 77.8
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 0.0e+00 1140.6 855 68.9
Rhsim13G0062300 Rhododendron simsii HOM05D003801 ORTHO05D004812 0.0e+00 1119.8 1072 58.8
SGA_v2.0_scaffold20G09298 Striga asiatica HOM05D003801 ORTHO05D004812 6.9e-312 1073.9 1020 57.0
vmacro02901 Vaccinium macrocarpon HOM05D003801 ORTHO05D004812 8.3e-311 1070.5 1026 58.4
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 5.1e-297 1024.6 708 77.3
SEGI_40714 Sequoiadendron giganteum HOM05D003801 ORTHO05D004812 2.5e-288 995.7 953 55.5
Pp3c17_6540 Physcomitrium patens HOM05D003801 ORTHO05D004812 3.1e-286 988.8 1001 52.1
Mapoly0002s0142 Marchantia polymorpha HOM05D003801 ORTHO05D004812 4.9e-284 981.5 956 53.5
Zm00001eb044910 Zea mays HOM05D003801 ORTHO05D004812 1.2e-282 976.9 960 54.1
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 5.3e-278 961.4 835 61.4
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 7.9e-266 921.0 963 51.7
Sabra19G0125200 Salix brachista HOM05D003801 ORTHO05D004812 3.7e-263 912.1 970 59.4
Nitab4.5_0004906g0050 Nicotiana tabacum HOM05D003801 ORTHO05D004812 1.2e-261 907.1 750 67.7
Cc01_g14930 Coffea canephora HOM05D003801 ORTHO05D004812 8.5e-260 901.0 651 74.3
CBR_g29785 Chara braunii HOM05D003801 ORTHO05D004812 2.4e-230 803.1 987 46.2
Nitab4.5_0000486g0130 Nicotiana tabacum HOM05D003801 ORTHO05D004812 2.8e-223 779.6 630 68.9
Nitab4.5_0004637g0060 Nicotiana tabacum HOM05D003801 ORTHO05D004812 8.6e-220 768.1 622 69.6
BcaB03g13435 Brassica carinata HOM05D003801 ORTHO05D004812 6.8e-209 731.9 564 65.8
Dinv12255 Davidia involucrata HOM05D003801 ORTHO05D004812 1.5e-203 714.1 629 64.7
Pp3c14_10270 Physcomitrium patens HOM05D003801 ORTHO05D004812 3.5e-197 693.0 689 52.0
Hma1.2p1_1421F.1_g282490 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 4.4e-192 676.0 541 68.8
BcaB02g06769 Brassica carinata HOM05D003801 ORTHO05D004812 3.3e-187 659.8 1021 43.5
Os10g0492000 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 4.9e-183 646.0 596 55.4
Sabra19G0125100 Salix brachista HOM05D003801 ORTHO05D004812 7.9e-165 585.5 583 60.2
HPP92_014541 Vanilla planifolia HOM05D003801 ORTHO05D004812 3.4e-160 570.1 571 54.1
SHI19243 Sapria himalayana HOM05D003801 ORTHO05D004812 1.1e-153 548.5 618 49.4
Sabra19G0124700 Salix brachista HOM05D003801 ORTHO05D004812 1.9e-142 511.1 324 84.9
PRCOL_00000154 Prasinoderma coloniale HOM05D003801 ORTHO05D004812 3.7e-138 496.9 1055 32.6
MCO16G620 Micromonas commoda HOM05D003801 ORTHO05D004812 1.4e-132 478.4 956 30.8
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 2.3e-132 477.6 385 64.9
QL05p055919 Quercus lobata HOM05D003801 ORTHO05D004812 2.6e-115 421.0 382 61.8
Sabra19G0125300 Salix brachista HOM05D003801 ORTHO05D004812 5.4e-113 413.3 265 83.4
Sabra19G0124600 Salix brachista HOM05D003801 ORTHO05D004812 2.0e-112 411.4 251 88.8
HPP92_014542 Vanilla planifolia HOM05D003801 ORTHO05D004812 3.5e-112 410.6 363 63.6
Oeu050040.1 Olea europaea HOM05D003801 ORTHO05D004812 7.7e-112 409.5 290 72.4
Cre10.g452450 Chlamydomonas reinhardtii HOM05D003801 ORTHO05D004812 2.9e-111 407.5 944 30.0
Dinv12256 Davidia involucrata HOM05D003801 ORTHO05D004812 4.1e-105 387.1 288 70.8
MBI15_g33038_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 1.0e-100 372.5 277 69.0
MBI07_g35968_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 6.8e-100 369.8 306 66.0
Os10g0492300 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 2.9e-98 364.4 412 46.6
Oeu050039.1 Olea europaea HOM05D003801 ORTHO05D004812 7.0e-97 359.8 560 44.3
CDE07G0033 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 3.5e-96 357.5 562 41.1
Lj6A615T91 Lonicera japonica HOM05D003801 ORTHO05D004812 8.6e-95 352.8 571 40.8
QL05p056751 Quercus lobata HOM05D003801 ORTHO05D004812 2.0e-91 341.7 277 66.4
Hma1.2p1_0613F.1_g189200 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 6.4e-82 310.1 299 60.2
Lj6A615T90 Lonicera japonica HOM05D003801 ORTHO05D004812 6.6e-79 300.1 252 62.3
AL1G17110 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 2.9e-74 284.6 228 63.2
arahy.Tifrunner.gnm1.ann1.WCY7KD Arachis hypogaea HOM05D003801 ORTHO05D004812 3.9e-71 274.2 189 73.5
Actinidia23184 Actinidia chinensis HOM05D003801 ORTHO05D004812 6.9e-68 263.5 428 42.8
Hma1.2p1_1586F.1_g292110 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 3.4e-67 261.2 242 61.2
CDE07G0490 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 9.9e-67 259.6 596 34.1
SHI19239 Sapria himalayana HOM05D003801 ORTHO05D004812 1.1e-65 256.1 305 50.2
PSO339G3141 Papaver somniferum HOM05D003801 ORTHO05D004812 5.4e-65 253.8 244 54.5
PSO339G0950 Papaver somniferum HOM05D003801 ORTHO05D004812 2.7e-64 251.5 219 56.2
BolC1t01884H Brassica oleracea HOM05D003801 ORTHO05D017532 5.8e-59 233.8 433 41.1
C01p22580 Brassica napus HOM05D003801 ORTHO05D017532 4.6e-56 224.2 418 41.4
CDE07G0188 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 5.6e-54 217.2 225 53.3
Cc01_g14940 Coffea canephora HOM05D003801 ORTHO05D004812 9.9e-51 206.5 154 72.7
CANSAT80G1859 Cannabis sativa HOM05D003801 ORTHO05D004812 4.6e-48 197.6 134 75.4
CDE07G0464 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 5.1e-47 194.1 163 63.2
Cc01_g14920 Coffea canephora HOM05D003801 ORTHO05D004812 1.3e-45 189.5 183 56.3
VMungo1215G2313 Vigna mungo HOM05D003801 ORTHO05D004812 4.6e-40 171.0 237 45.1
BcaC09g51691 Brassica carinata HOM05D003801 ORTHO05D017532 4.3e-38 164.5 337 37.1
CSS0035288 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 5.7e-38 164.1 124 77.4
BcaC09g50643 Brassica carinata HOM05D003801 ORTHO05D017532 1.3e-34 152.9 412 34.2
C05p05050 Brassica napus HOM05D003801 ORTHO05D004812 1.3e-34 152.9 92 79.3
Hma1.2p1_1586F.1_g292120 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.4e-33 149.4 174 54.6
Glyma.11G162400 Glycine max HOM05D003801 ORTHO05D004812 1.3e-29 136.3 132 57.6
TAR624G1267 Trochodendron aralioides HOM05D004621 ORTHO05D005817 1.4e-28 132.9 102 64.7
SHI19242 Sapria himalayana HOM05D003801 ORTHO05D004812 9.1e-28 130.2 122 58.2
AL1G16970 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 1.1e-25 123.2 74 77.0
AL1G17100 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 1.1e-25 123.2 74 77.0
SEGI_21560 Sequoiadendron giganteum HOM05D003801 ORTHO05D010437 4.7e-24 117.9 172 44.8
TAR629G1141 Trochodendron aralioides HOM05D000566 ORTHO05D000686 2.3e-23 115.5 66 84.8
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 1.1e-22 113.2 78 73.1
BolC1t02191H Brassica oleracea HOM05D003801 ORTHO05D017532 1.7e-21 109.4 172 42.4
Os10g0492101 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 2.8e-21 108.6 109 52.3
COL.COLO4_07614 Corchorus olitorius HOM05D003801 ORTHO05D004812 1.0e-15 90.1 163 38.0
VMungo1215G2515 Vigna mungo HOM05D003801 ORTHO05D436020 3.6e-08 65.1 53 62.3
Phvul.003G243600 Phaseolus vulgaris HOM05D002898 ORTHO05D003424 5.2e-07 61.2 163 31.3
C01p10430 Brassica napus HOM05D003801 ORTHO05D017532 4.4e-06 58.2 35 77.1


User provided reference genes

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