Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.019G125100 Populus trichocarpa HOM05D007156 ORTHO05D003871 3.0e-54 214.9 110 100.0
Sabra19G0123400 Salix brachista HOM05D007156 ORTHO05D003871 9.5e-48 193.4 110 90.0
Sabra19G0131200 Salix brachista HOM05D007156 ORTHO05D003871 1.5e-40 169.5 114 79.8
Potri.013G152300 Populus trichocarpa HOM05D007156 ORTHO05D003871 2.9e-36 155.2 109 76.1
Sabra13G0122400 Salix brachista HOM05D007156 ORTHO05D003871 4.9e-36 154.5 108 75.0
Atru.chr6.3108 Acer truncatum HOM05D007156 ORTHO05D003871 3.4e-21 105.1 109 58.7
Manes.12G077701 Manihot esculenta HOM05D007156 ORTHO05D003871 7.6e-21 104.0 118 55.9
Thecc.02G165500 Theobroma cacao HOM05D007156 ORTHO05D003871 8.4e-20 100.5 104 54.8
COL.COLO4_13040 Corchorus olitorius HOM05D007156 ORTHO05D003871 1.9e-19 99.4 104 55.8
Prupe.3G223500 Prunus persica HOM05D007156 ORTHO05D003871 4.1e-19 98.2 118 54.2
Psat7g163320 Pisum sativum HOM05D007156 ORTHO05D003871 2.7e-18 95.5 125 48.8
CSS0000680 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 3.5e-18 95.1 116 52.6
TPR.G19047 Trifolium pratense HOM05D007156 ORTHO05D003871 4.6e-18 94.7 84 60.7
Phvul.005G111100 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 6.0e-18 94.4 126 45.2
Ciclev10017232m.g Citrus clementina HOM05D007156 ORTHO05D003871 1.0e-17 93.6 113 59.3
MBI02_g42365_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.3e-17 93.2 109 55.0
MBI02_g43089_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.3e-17 93.2 109 55.0
Sed0007405 Sechium edule HOM05D007156 ORTHO05D003871 1.3e-17 93.2 108 54.6
VMungo1127G0041 Vigna mungo HOM05D007156 ORTHO05D003871 1.3e-17 93.2 83 67.5
Cpa.g.sc34.47 Carica papaya HOM05D007156 ORTHO05D003871 2.3e-17 92.4 105 58.1
Dinv18559 Davidia involucrata HOM05D007156 ORTHO05D003871 2.3e-17 92.4 108 52.8
Glyma.06G301200 Glycine max HOM05D007156 ORTHO05D003871 3.0e-17 92.0 126 49.2
Medtr0945s0020 Medicago truncatula HOM05D007156 ORTHO05D003871 3.9e-17 91.7 108 51.9
Haze_12992 Corylus avellana HOM05D007156 ORTHO05D003871 5.1e-17 91.3 122 51.6
Glyma.12G103200 Glycine max HOM05D007156 ORTHO05D003871 6.6e-17 90.9 51 88.2
Glyma.13G304200 Glycine max HOM05D007156 ORTHO05D003871 6.6e-17 90.9 124 47.6
VMungo1080G0311 Vigna mungo HOM05D007156 ORTHO05D003871 8.7e-17 90.5 120 48.3
CiPaw.04G120100 Carya illinoinensis HOM05D007156 ORTHO05D003871 1.1e-16 90.1 118 51.7
Phvul.011G107900 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 1.1e-16 90.1 77 67.5
RcHm_v2.0_Chr2g0160641 Rosa chinensis HOM05D007156 ORTHO05D003871 1.1e-16 90.1 121 55.4
FAN02G1242 Fragaria x ananassa HOM05D007156 ORTHO05D003871 1.5e-16 89.7 122 50.8
FAN09G0550 Fragaria x ananassa HOM05D007156 ORTHO05D003871 1.5e-16 89.7 122 50.8
Cfa014479 Carpinus fangiana HOM05D007156 ORTHO05D003871 1.9e-16 89.4 117 53.8
FAN05G2387 Fragaria x ananassa HOM05D007156 ORTHO05D003871 3.3e-16 88.6 122 50.0
Lj3g0000666 Lotus japonicus HOM05D007156 ORTHO05D003871 3.3e-16 88.6 124 53.2
MBI02_g42366_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 3.3e-16 88.6 107 52.3
MBI02_g43088_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 3.3e-16 88.6 107 52.3
TAR271G0004 Trochodendron aralioides HOM05D007156 ORTHO05D003871 7.3e-16 87.4 111 50.5
Hma1.2p1_0712F.1_g207550 Hydrangea macrophylla HOM05D007156 ORTHO05D003871 1.2e-15 86.7 115 51.3
MD09G1102100 Malus domestica HOM05D007156 ORTHO05D003871 2.1e-15 85.9 105 53.3
QL08p034497 Quercus lobata HOM05D007156 ORTHO05D003871 2.1e-15 85.9 112 56.2
FvH4_6g43890 Fragaria vesca HOM05D007156 ORTHO05D003871 3.6e-15 85.1 122 49.2
FAN14G5947 Fragaria x ananassa HOM05D007156 ORTHO05D003871 3.6e-15 85.1 122 49.2
MBI18_g20355_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 3.6e-15 85.1 107 51.4
CiPaw.03G165400 Carya illinoinensis HOM05D007156 ORTHO05D003871 4.7e-15 84.7 120 52.5
ClCG02G001520 Citrullus lanatus HOM05D007156 ORTHO05D003871 8.1e-15 84.0 110 51.8
MD09G1127500 Malus domestica HOM05D007156 ORTHO05D003871 1.1e-14 83.6 108 49.1
arahy.Tifrunner.gnm1.ann1.ABE34K Arachis hypogaea HOM05D007156 ORTHO05D003871 3.1e-14 82.0 86 61.6
Lalb_Chr24g0393601 Lupinus albus HOM05D007156 ORTHO05D003871 3.1e-14 82.0 102 48.0
Gorai.005G208200 Gossypium raimondii HOM05D007156 ORTHO05D003871 5.2e-14 81.3 120 45.0
Gohir.D02G185700 Gossypium hirsutum HOM05D007156 ORTHO05D003871 6.9e-14 80.9 120 45.0
Migut.M00380 Erythranthe guttata HOM05D007156 ORTHO05D003871 9.0e-14 80.5 90 52.2
Psat5g266920 Pisum sativum HOM05D007156 ORTHO05D003871 1.2e-13 80.1 107 43.9
Actinidia12482 Actinidia chinensis HOM05D007156 ORTHO05D003871 1.5e-13 79.7 53 77.4
Nn2g11286 Nelumbo nucifera HOM05D007156 ORTHO05D003871 2.0e-13 79.3 70 60.0
Gohir.A03G162600 Gossypium hirsutum HOM05D007156 ORTHO05D003871 3.4e-13 78.6 120 43.3
Ca_01559_v3 Cicer arietinum L. HOM05D007156 ORTHO05D003871 4.4e-13 78.2 68 60.3
MBI18_g38397_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 9.9e-13 77.0 103 47.6
TPR.G18057 Trifolium pratense HOM05D007156 ORTHO05D003871 1.7e-12 76.3 65 63.1
CAN.G86.35 Capsicum annuum HOM05D007156 ORTHO05D003871 2.2e-12 75.9 120 43.3
Lj3g0015957 Lotus japonicus HOM05D007156 ORTHO05D003871 2.9e-12 75.5 115 50.4
CsaV3_7G003930 Cucumis sativus L. HOM05D007156 ORTHO05D003871 3.8e-12 75.1 101 49.5
Nitab4.5_0009996g0020 Nicotiana tabacum HOM05D007156 ORTHO05D003871 4.9e-12 74.7 121 46.3
Peaxi162Scf00012g00273 Petunia axillaris HOM05D007156 ORTHO05D003871 4.9e-12 74.7 104 44.2
CSS0043735 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 8.4e-12 73.9 63 66.7
Eucgr.A01740 Eucalyptus grandis HOM05D007156 ORTHO05D003871 8.4e-12 73.9 39 89.7
Solyc12g005690.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 8.4e-12 73.9 123 38.2
Nitab4.5_0001302g0030 Nicotiana tabacum HOM05D007156 ORTHO05D003871 1.1e-11 73.6 124 42.7
Rhsim06G0154900 Rhododendron simsii HOM05D007156 ORTHO05D003871 1.1e-11 73.6 49 73.5
MSTRG.6540 Avicennia marina HOM05D007156 ORTHO05D003871 1.4e-11 73.2 66 63.6
Gohir.A04G106700 Gossypium hirsutum HOM05D007156 ORTHO05D003871 1.4e-11 73.2 102 48.0
unitig_746.g26730 Utricularia gibba HOM05D007156 ORTHO05D003871 1.4e-11 73.2 63 60.3
ATR0804G053 Amborella trichopoda HOM05D007156 ORTHO05D003871 3.2e-11 72.0 91 48.4
Dinv17859 Davidia involucrata HOM05D001601 ORTHO05D006936 5.4e-11 71.2 60 58.3
CSS0048777 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 7.1e-11 70.9 103 40.8
Sed0001937 Sechium edule HOM05D007156 ORTHO05D003871 9.3e-11 70.5 51 76.5
Gorai.012G132600 Gossypium raimondii HOM05D007156 ORTHO05D003871 2.1e-10 69.3 106 48.1
Solyc07g052990.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 6.0e-10 67.8 37 81.1
Rhsim02G0116500 Rhododendron simsii HOM05D007156 ORTHO05D003871 1.0e-09 67.0 68 54.4
PGSC0003DMG400013754 Solanum tuberosum HOM05D007156 ORTHO05D003871 1.0e-09 67.0 51 62.7
PGSC0003DMG400026188 Solanum tuberosum HOM05D007156 ORTHO05D003871 1.0e-09 67.0 113 43.4
Duzib160G0418 Durio zibethinus HOM05D001601 ORTHO05D006936 1.3e-09 66.6 46 67.4
PGSC0003DMG400021719 Solanum tuberosum HOM05D001601 ORTHO05D006936 1.3e-09 66.6 68 45.6
TAR633G1059 Trochodendron aralioides HOM05D007866 ORTHO05D003871 1.3e-09 66.6 59 59.3
Sopen07g026540 Solanum pennellii HOM05D007156 ORTHO05D003871 1.7e-09 66.2 66 57.6
unitig_899.g15247 Utricularia gibba HOM05D007156 ORTHO05D003871 2.3e-09 65.9 53 62.3
ClCG02G011170 Citrullus lanatus HOM05D007156 ORTHO05D003871 3.9e-09 65.1 104 40.4
Sopen02g024570 Solanum pennellii HOM05D007156 ORTHO05D003871 5.1e-09 64.7 110 38.2
CSS0008619 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 6.6e-09 64.3 49 65.3
CsaV3_6G012600 Cucumis sativus L. HOM05D007156 ORTHO05D003871 6.6e-09 64.3 46 69.6
Sed0003235 Sechium edule HOM05D007156 ORTHO05D003871 6.6e-09 64.3 101 42.6
Dinv18957 Davidia involucrata HOM05D007156 ORTHO05D003871 8.7e-09 63.9 71 53.5
Solyc02g079800.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 1.1e-08 63.5 68 45.6
SGA_v2.0_scaffold70G23435 Striga asiatica HOM05D007156 ORTHO05D003871 1.1e-08 63.5 62 54.8
CiPaw.09G201000 Carya illinoinensis HOM05D007866 ORTHO05D003871 1.9e-08 62.8 158 32.9
Peaxi162Scf00007g00157 Petunia axillaris HOM05D007156 ORTHO05D003871 2.5e-08 62.4 56 60.7
Gorai.002G255600 Gossypium raimondii HOM05D007866 ORTHO05D003871 3.3e-08 62.0 79 45.6
Thecc.06G206300 Theobroma cacao HOM05D001601 ORTHO05D006936 3.3e-08 62.0 46 63.0
Nitab4.5_0000362g0160 Nicotiana tabacum HOM05D007866 ORTHO05D003871 4.3e-08 61.6 63 49.2
Potri.004G029700 Populus trichocarpa HOM05D012748 ORTHO05D014783 4.3e-08 61.6 60 58.3
Atru.chr8.2088 Acer truncatum HOM05D007866 ORTHO05D003871 5.6e-08 61.2 76 44.7
Nn1g06910 Nelumbo nucifera HOM05D007156 ORTHO05D003871 5.6e-08 61.2 116 40.5
Gohir.D01G209950 Gossypium hirsutum HOM05D007866 ORTHO05D003871 7.3e-08 60.8 79 45.6
Lalb_Chr07g0193271 Lupinus albus HOM05D007866 ORTHO05D003871 7.3e-08 60.8 36 75.0
Nitab4.5_0005140g0010 Nicotiana tabacum HOM05D007156 ORTHO05D003871 7.3e-08 60.8 41 68.3
Sabra04G0016700 Salix brachista HOM05D007156 ORTHO05D003871 7.3e-08 60.8 43 67.4
BcaB04g18538 Brassica carinata HOM05D007866 ORTHO05D003871 9.6e-08 60.5 54 61.1
BcaB04g18539 Brassica carinata HOM05D007866 ORTHO05D003871 9.6e-08 60.5 54 61.1
Prupe.6G264300 Prunus persica HOM05D007866 ORTHO05D003871 1.3e-07 60.1 78 47.4
Gohir.A01G221050 Gossypium hirsutum HOM05D007866 ORTHO05D003871 1.6e-07 59.7 79 45.6
Nitab4.5_0008116g0010 Nicotiana tabacum HOM05D007866 ORTHO05D003871 1.6e-07 59.7 71 49.3
Sed0027672 Sechium edule HOM05D007866 ORTHO05D003871 1.6e-07 59.7 103 38.8
MD12G1154500 Malus domestica HOM05D007866 ORTHO05D003871 2.1e-07 59.3 67 49.3
Peaxi162Scf00014g00168 Petunia axillaris HOM05D007866 ORTHO05D003871 2.1e-07 59.3 59 50.8
Sabra16G0103600 Salix brachista HOM05D007866 ORTHO05D003871 2.8e-07 58.9 66 48.5
Rhsim13G0163300 Rhododendron simsii HOM05D007156 ORTHO05D003871 3.6e-07 58.5 103 36.9
PGSC0003DMG400019193 Solanum tuberosum HOM05D007866 ORTHO05D003871 3.6e-07 58.5 37 70.3
BraA03t12778Z Brassica rapa HOM05D007866 ORTHO05D003871 4.8e-07 58.2 54 59.3
Ciclev10013493m.g Citrus clementina HOM05D007866 ORTHO05D003871 4.8e-07 58.2 140 33.6
Haze_20881 Corylus avellana HOM05D007866 ORTHO05D003871 4.8e-07 58.2 35 77.1
Haze_20890 Corylus avellana HOM05D007866 ORTHO05D003871 4.8e-07 58.2 35 77.1
Sp3g07650 Schrenkiella parvula HOM05D007866 ORTHO05D003871 4.8e-07 58.2 50 60.0
Solyc09g011430.1 Solanum lycopersicum HOM05D007866 ORTHO05D003871 4.8e-07 58.2 60 53.3
Sopen09g006160 Solanum pennellii HOM05D007866 ORTHO05D003871 4.8e-07 58.2 63 50.8
THA.LOC104816660 Tarenaya hassleriana HOM05D007866 ORTHO05D003871 4.8e-07 58.2 56 53.6
Lj3g0011949 Lotus japonicus HOM05D007866 ORTHO05D003871 6.2e-07 57.8 81 44.4
Oeu030552.1 Olea europaea HOM05D007866 ORTHO05D003871 6.2e-07 57.8 67 47.8
PGSC0003DMG400037339 Solanum tuberosum HOM05D007866 ORTHO05D003871 6.2e-07 57.8 64 46.9
AL3G20400 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 8.1e-07 57.4 54 57.4
EL10Ac7g16230 Beta vulgaris HOM05D007866 ORTHO05D003871 8.1e-07 57.4 35 71.4
Manes.09G098200 Manihot esculenta HOM05D007866 ORTHO05D003871 8.1e-07 57.4 61 52.5
Os07g0549100 Oryza sativa ssp. japonica HOM05D052182 ORTHO05D003871 8.1e-07 57.4 51 58.8
CSS0047873 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 1.1e-06 57.0 38 65.8
Duzib128G0987 Durio zibethinus HOM05D007866 ORTHO05D003871 1.1e-06 57.0 68 51.5
TAR633G1409 Trochodendron aralioides HOM05D007866 ORTHO05D003871 1.1e-06 57.0 47 59.6
HanXRQChr06g0177631 Helianthus annuus HOM05D007866 ORTHO05D003871 1.4e-06 56.6 143 37.1
AL70U10030 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 1.8e-06 56.2 54 57.4
FAN05G4429 Fragaria x ananassa HOM05D007866 ORTHO05D003871 1.8e-06 56.2 60 51.7
Nn1g03759 Nelumbo nucifera HOM05D007156 ORTHO05D003871 1.8e-06 56.2 119 34.5
C03p43730 Brassica napus HOM05D007866 ORTHO05D003871 2.4e-06 55.8 74 48.6
CARHR083640 Cardamine hirsuta HOM05D007866 ORTHO05D003871 2.4e-06 55.8 54 57.4
Ca_26200_v3 Cicer arietinum L. HOM05D007156 ORTHO05D003871 2.4e-06 55.8 97 41.2
Thhalv10021969m.g Eutrema salsugineum HOM05D007866 ORTHO05D003871 2.4e-06 55.8 59 54.2
QL07p028342 Quercus lobata HOM05D007866 ORTHO05D003871 2.4e-06 55.8 66 48.5
RcHm_v2.0_Chr3g0464671 Rosa chinensis HOM05D007866 ORTHO05D003871 2.4e-06 55.8 113 41.6
Aqoxy4G02532 Aquilegia oxysepala HOM05D007156 ORTHO05D003871 4.0e-06 55.1 64 51.6
AT3G09280 Arabidopsis thaliana HOM05D007866 ORTHO05D003871 4.0e-06 55.1 72 48.6
Carub.0003s0839 Capsella rubella HOM05D007866 ORTHO05D003871 4.0e-06 55.1 78 47.4
CsaV3_4G025580 Cucumis sativus L. HOM05D007866 ORTHO05D003871 4.0e-06 55.1 56 55.4
Medtr2g089190 Medicago truncatula HOM05D007156 ORTHO05D003871 4.0e-06 55.1 121 37.2
Potri.006G092200 Populus trichocarpa HOM05D007866 ORTHO05D003871 4.0e-06 55.1 77 45.5
MELO3C003184.2 Cucumis melo HOM05D007866 ORTHO05D003871 5.3e-06 54.7 56 53.6
Lsat_1_v5_gn_8_84120 Lactuca sativa HOM05D007866 ORTHO05D003871 5.3e-06 54.7 41 65.9


User provided reference genes

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