Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.019G101950 Populus trichocarpa HOM05D000540 ORTHO05D008105 3.7e-51 204.5 99 100.0
Thecc.02G009100 Theobroma cacao HOM05D000540 ORTHO05D008105 4.7e-14 81.3 54 72.2
Sabra13G0107600 Salix brachista HOM05D000540 ORTHO05D008105 5.2e-13 77.8 54 66.7
Ah.08g216160 Amaranthus hybridus HOM05D000540 ORTHO05D008105 6.8e-13 77.4 54 68.5
Hund07747 Selenicereus undatus HOM05D000540 ORTHO05D008105 6.8e-13 77.4 54 68.5
Eucgr.D00430 Eucalyptus grandis HOM05D000540 ORTHO05D008105 1.5e-12 76.3 72 52.8
Potri.013G129600 Populus trichocarpa HOM05D000540 ORTHO05D008105 1.5e-12 76.3 54 63.0
Atru.chr1.3246 Acer truncatum HOM05D000540 ORTHO05D008105 2.0e-12 75.9 72 50.0
Atru.chr7.1082 Acer truncatum HOM05D000540 ORTHO05D008105 2.0e-12 75.9 72 50.0
Rhsim11G0036800 Rhododendron simsii HOM05D000540 ORTHO05D008105 2.6e-12 75.5 54 66.7
Zm00001eb003570 Zea mays HOM05D000540 ORTHO05D008105 2.6e-12 75.5 54 68.5
Zm00001eb049250 Zea mays HOM05D000540 ORTHO05D008105 2.6e-12 75.5 54 68.5
BcaB04g20419 Brassica carinata HOM05D000540 ORTHO05D008105 4.4e-12 74.7 42 83.3
BcaB06g26544 Brassica carinata HOM05D000540 ORTHO05D008105 4.4e-12 74.7 42 83.3
BcaC01g03363 Brassica carinata HOM05D000540 ORTHO05D008105 4.4e-12 74.7 42 83.3
BcaC06g35575 Brassica carinata HOM05D000540 ORTHO05D008105 4.4e-12 74.7 42 83.3
A01p31250 Brassica napus HOM05D000540 ORTHO05D008105 4.4e-12 74.7 42 83.3
A03p43380 Brassica napus HOM05D000540 ORTHO05D008105 4.4e-12 74.7 42 83.3
A07p08550 Brassica napus HOM05D000540 ORTHO05D008105 4.4e-12 74.7 42 83.3
C07p13360 Brassica napus HOM05D000540 ORTHO05D008105 4.4e-12 74.7 42 83.3
BolC1t03932H Brassica oleracea HOM05D000540 ORTHO05D008105 4.4e-12 74.7 42 83.3
BolC3t17591H Brassica oleracea HOM05D000540 ORTHO05D008105 4.4e-12 74.7 42 83.3
BolC7t41830H Brassica oleracea HOM05D000540 ORTHO05D008105 4.4e-12 74.7 42 83.3
BraA01t03249Z Brassica rapa HOM05D000540 ORTHO05D008105 4.4e-12 74.7 42 83.3
BraA03t13476Z Brassica rapa HOM05D000540 ORTHO05D008105 4.4e-12 74.7 42 83.3
BraA07t28644Z Brassica rapa HOM05D000540 ORTHO05D008105 4.4e-12 74.7 42 83.3
Carub.0008s0045 Capsella rubella HOM05D000540 ORTHO05D008105 4.4e-12 74.7 42 83.3
Thhalv10002665m.g Eutrema salsugineum HOM05D000540 ORTHO05D008105 4.4e-12 74.7 42 83.3
Medtr7g106780 Medicago truncatula HOM05D000540 ORTHO05D008105 4.4e-12 74.7 42 81.0
Sp3g21530 Schrenkiella parvula HOM05D000540 ORTHO05D008105 4.4e-12 74.7 42 83.3
Sc06g0008940 Simmondsia chinensis HOM05D000540 ORTHO05D008105 5.8e-12 74.3 42 83.3
AL8G10730 Arabidopsis lyrata HOM05D000540 ORTHO05D008105 9.9e-12 73.6 42 81.0
AT5G47320 Arabidopsis thaliana HOM05D000540 ORTHO05D008105 9.9e-12 73.6 42 81.0
C03p53300 Brassica napus HOM05D000540 ORTHO05D008105 1.3e-11 73.2 42 81.0
Manes.07G029100 Manihot esculenta HOM05D000540 ORTHO05D008105 1.3e-11 73.2 54 64.8
CANSAT16G0016 Cannabis sativa HOM05D000540 ORTHO05D008105 1.7e-11 72.8 76 51.3
Zm00001eb219510 Zea mays HOM05D000540 ORTHO05D008105 1.7e-11 72.8 54 64.8
Zm00001eb321850 Zea mays HOM05D000540 ORTHO05D008105 1.7e-11 72.8 54 64.8
Aa31LG8G10410 Aethionema arabicum HOM05D000540 ORTHO05D008105 2.2e-11 72.4 43 79.1
C01p39820 Brassica napus HOM05D000540 ORTHO05D008105 2.2e-11 72.4 42 81.0
DCAR_015262 Daucus carota HOM05D000540 ORTHO05D008105 2.2e-11 72.4 42 81.0
Zm00001eb321840 Zea mays HOM05D000540 ORTHO05D008105 2.2e-11 72.4 54 64.8
arahy.Tifrunner.gnm1.ann1.3CPC1Y Arachis hypogaea HOM05D000540 ORTHO05D008105 4.9e-11 71.2 41 80.5
arahy.Tifrunner.gnm1.ann1.WZXK6X Arachis hypogaea HOM05D000540 ORTHO05D008105 4.9e-11 71.2 41 80.5
Ciclev10002977m.g Citrus clementina HOM05D000540 ORTHO05D008105 4.9e-11 71.2 54 59.3
Lj3g0015602 Lotus japonicus HOM05D000540 ORTHO05D008105 4.9e-11 71.2 54 63.0
MD02G1217700 Malus domestica HOM05D000540 ORTHO05D008105 4.9e-11 71.2 67 50.7
MD07G1100000 Malus domestica HOM05D000540 ORTHO05D008105 6.4e-11 70.9 67 50.7
Solyc00g500245.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 6.4e-11 70.9 54 66.7
Solyc00g500273.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 6.4e-11 70.9 54 66.7
PGSC0003DMG400021035 Solanum tuberosum HOM05D000540 ORTHO05D008105 6.4e-11 70.9 54 66.7
Ca_09077_v3 Cicer arietinum L. HOM05D000540 ORTHO05D008105 8.3e-11 70.5 41 78.0
Ca_22805_v3 Cicer arietinum L. HOM05D000540 ORTHO05D008105 8.3e-11 70.5 41 78.0
Gohir.A03G217200 Gossypium hirsutum HOM05D000540 ORTHO05D008105 8.3e-11 70.5 42 78.6
Gohir.D02G238800 Gossypium hirsutum HOM05D000540 ORTHO05D008105 8.3e-11 70.5 42 78.6
Gorai.005G267300 Gossypium raimondii HOM05D000540 ORTHO05D008105 8.3e-11 70.5 42 78.6
Nn1g09992 Nelumbo nucifera HOM05D000540 ORTHO05D008105 8.3e-11 70.5 61 60.7
Nn1g10001 Nelumbo nucifera HOM05D000540 ORTHO05D008105 8.3e-11 70.5 61 60.7
Nn1g10092 Nelumbo nucifera HOM05D000540 ORTHO05D008105 8.3e-11 70.5 61 60.7
TPR.G25660 Trifolium pratense HOM05D000540 ORTHO05D008105 8.3e-11 70.5 41 78.0
TPR.G34443 Trifolium pratense HOM05D000540 ORTHO05D008105 8.3e-11 70.5 41 78.0
Lalb_Chr10g0097221 Lupinus albus HOM05D000540 ORTHO05D008105 1.1e-10 70.1 41 78.0
Prupe.2G123500 Prunus persica HOM05D000540 ORTHO05D008105 1.1e-10 70.1 69 50.7
Glyma.08G106800 Glycine max HOM05D000540 ORTHO05D008105 1.4e-10 69.7 41 75.6
Lj2A1229G102 Lonicera japonica HOM05D000540 ORTHO05D000681 1.4e-10 69.7 61 59.0
Phvul.001G167500 Phaseolus vulgaris HOM05D000540 ORTHO05D008105 1.4e-10 69.7 41 75.6
VMungo1383G2423 Vigna mungo HOM05D001610 ORTHO05D001585 1.4e-10 69.7 41 75.6
FvH4_5g23230 Fragaria vesca HOM05D000540 ORTHO05D008105 1.9e-10 69.3 42 78.6
FAN04G1833 Fragaria x ananassa HOM05D000540 ORTHO05D008105 1.9e-10 69.3 42 78.6
FAN08G1475 Fragaria x ananassa HOM05D000540 ORTHO05D008105 1.9e-10 69.3 42 78.6
FAN18G0695 Fragaria x ananassa HOM05D000540 ORTHO05D008105 1.9e-10 69.3 42 78.6
FAN18G3733 Fragaria x ananassa HOM05D000540 ORTHO05D008105 1.9e-10 69.3 42 78.6
Medtr5g085270 Medicago truncatula HOM05D000540 ORTHO05D008105 1.9e-10 69.3 41 78.0
RcHm_v2.0_Chr7g0212161 Rosa chinensis HOM05D000540 ORTHO05D008105 1.9e-10 69.3 42 78.6
Medtr8g466190 Medicago truncatula HOM05D000540 ORTHO05D008105 2.4e-10 68.9 51 66.7
CiPaw.04G013600 Carya illinoinensis HOM05D002804 ORTHO05D003755 3.2e-10 68.6 52 65.4
MELO3C011310.2 Cucumis melo HOM05D000540 ORTHO05D008105 3.2e-10 68.6 42 73.8
Glyma.05G150000 Glycine max HOM05D000540 ORTHO05D008105 3.2e-10 68.6 41 73.2
Nitab4.5_0011987g0020 Nicotiana tabacum HOM05D000540 ORTHO05D008105 4.1e-10 68.2 54 64.8
Sp7g05780 Schrenkiella parvula HOM05D000540 ORTHO05D008105 4.1e-10 68.2 42 76.2
Nitab4.5_0009703g0070 Nicotiana tabacum HOM05D000540 ORTHO05D008105 5.4e-10 67.8 54 64.8
Solyc05g045820.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 1.2e-09 66.6 54 61.1
Nitab4.5_0001153g0100 Nicotiana tabacum HOM05D000540 ORTHO05D008105 1.6e-09 66.2 61 54.1
GSVIVG01038017001 Vitis vinifera HOM05D000540 ORTHO05D008105 2.1e-09 65.9 61 55.7
CsaV3_2G032570 Cucumis sativus L. HOM05D000540 ORTHO05D008105 3.5e-09 65.1 42 69.0
Cfa009693 Carpinus fangiana HOM05D002804 ORTHO05D003755 4.6e-09 64.7 42 69.0
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 1.0e-08 63.5 66 48.5
Sopen00g002770 Solanum pennellii HOM05D004291 ORTHO05D005620 1.5e-07 59.7 47 63.8
SGA_v2.0_scaffold507G52537 Striga asiatica HOM05D000540 ORTHO05D000681 1.9e-07 59.3 48 62.5
Mapoly0157s0025 Marchantia polymorpha HOM05D000540 ORTHO05D008105 3.3e-07 58.5 61 47.5
Solyc05g045760.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 3.3e-07 58.5 53 60.4
Solyc12g035810.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 4.3e-07 58.2 65 47.7
GSVIVG01027360001 Vitis vinifera HOM05D000540 ORTHO05D008105 9.5e-07 57.0 57 49.1
Pp3c3_35760 Physcomitrium patens HOM05D024141 ORTHO05D008105 2.1e-06 55.8 60 46.7
Peaxi162Scf00406g00134 Petunia axillaris HOM05D001223 ORTHO05D001058 2.8e-06 55.5 63 47.6
SMO358G0711 Selaginella moellendorffii HOM05D000540 ORTHO05D008105 4.7e-06 54.7 46 60.9
AagrBONN_evm.TU.Sc2ySwM_117.3450 Anthoceros agrestis HOM05D000540 ORTHO05D008105 6.2e-06 54.3 44 54.5
Haze_26884 Corylus avellana HOM05D000540 ORTHO05D000681 6.2e-06 54.3 43 55.8


User provided reference genes

Program Settings