Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 1.7e-154 549.3 282 100.0
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 3.0e-146 521.9 282 94.0
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 3.0e-146 521.9 282 94.0
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 1.4e-127 459.9 270 88.1
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 5.7e-121 438.0 265 86.0
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 1.4e-114 416.8 292 77.4
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 3.2e-100 369.0 281 71.5
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 4.7e-99 365.2 278 70.1
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 4.4e-97 358.6 287 70.7
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 2.8e-96 355.9 286 70.3
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 1.4e-95 353.6 283 70.3
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 1.8e-95 353.2 293 66.2
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 3.1e-95 352.4 289 69.2
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 7.0e-95 351.3 284 70.1
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 9.1e-95 350.9 286 68.5
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 1.2e-94 350.5 286 68.5
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 1.6e-94 350.1 283 68.6
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 1.0e-93 347.4 274 68.2
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 1.9e-92 343.2 286 65.4
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 2.5e-92 342.8 247 72.1
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 4.2e-92 342.0 266 68.4
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 5.5e-92 341.7 286 64.3
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 6.1e-91 338.2 288 64.6
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 8.0e-91 337.8 281 66.5
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 2.3e-90 336.3 286 65.0
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 2.3e-90 336.3 239 73.2
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 6.8e-90 334.7 243 72.8
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 1.2e-89 334.0 253 69.2
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 3.4e-89 332.4 282 63.5
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 3.4e-89 332.4 282 63.8
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 5.7e-89 331.6 294 63.9
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 1.3e-88 330.5 278 65.1
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 1.7e-88 330.1 267 66.3
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 2.2e-88 329.7 282 66.0
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 3.7e-88 328.9 217 75.6
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 3.7e-88 328.9 238 71.8
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 6.3e-88 328.2 228 72.4
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 6.3e-88 328.2 267 66.7
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 8.3e-88 327.8 289 62.3
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 2.4e-87 326.2 275 65.1
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 4.1e-87 325.5 291 61.2
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 7.0e-87 324.7 275 65.1
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 7.0e-87 324.7 264 65.2
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 7.0e-87 324.7 236 71.2
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 1.2e-86 323.9 284 63.4
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 1.6e-86 323.6 237 71.3
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 2.0e-86 323.2 284 63.4
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 4.5e-86 322.0 247 68.0
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 4.5e-86 322.0 263 64.6
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 7.7e-86 321.2 232 70.3
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 1.7e-85 320.1 232 70.7
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 2.2e-85 319.7 233 70.4
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 2.2e-85 319.7 234 71.4
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 2.9e-85 319.3 226 71.7
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 2.9e-85 319.3 236 68.6
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 3.8e-85 318.9 201 77.6
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 3.8e-85 318.9 282 61.3
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 6.5e-85 318.2 263 67.7
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 6.5e-85 318.2 233 68.2
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 1.9e-84 316.6 257 67.7
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 2.5e-84 316.2 232 69.8
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 3.2e-84 315.8 201 79.1
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 4.2e-84 315.5 254 68.1
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 4.2e-84 315.5 201 78.1
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 4.2e-84 315.5 241 69.3
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 5.5e-84 315.1 262 63.0
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 7.2e-84 314.7 236 66.9
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 9.4e-84 314.3 254 68.5
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 9.4e-84 314.3 287 61.0
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 1.6e-83 313.5 202 77.2
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 2.1e-83 313.2 209 73.2
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 4.7e-83 312.0 241 68.5
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 4.7e-83 312.0 241 68.5
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 6.1e-83 311.6 214 74.8
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 6.1e-83 311.6 234 70.5
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 1.4e-82 310.5 285 60.4
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 1.4e-82 310.5 268 62.3
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 1.8e-82 310.1 246 66.3
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 3.0e-82 309.3 203 77.3
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 8.8e-82 307.8 201 76.1
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 1.5e-81 307.0 241 69.3
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 2.0e-81 306.6 203 76.8
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 5.7e-81 305.1 279 60.2
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 7.5e-81 304.7 260 61.2
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 1.7e-80 303.5 279 58.8
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 2.8e-80 302.8 279 59.9
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 6.3e-80 301.6 280 58.6
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 6.3e-80 301.6 266 62.0
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 8.3e-80 301.2 260 60.4
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 8.3e-80 301.2 277 61.4
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 8.3e-80 301.2 211 71.1
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 8.3e-80 301.2 266 61.7
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 8.3e-80 301.2 276 60.9
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.4e-79 300.4 234 67.1
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 1.4e-79 300.4 250 63.2
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 3.1e-79 299.3 201 74.1
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 5.4e-79 298.5 227 68.3
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 9.1e-79 297.7 191 77.5
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 1.2e-78 297.4 274 60.2
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 1.6e-78 297.0 218 70.2
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 2.9e-77 292.7 202 73.3
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 1.1e-76 290.8 205 72.7
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 1.9e-76 290.0 275 58.9
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 4.2e-76 288.9 247 66.8
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 1.2e-75 287.3 192 75.0
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 6.1e-75 285.0 206 69.9
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.8e-74 283.5 226 65.9
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 5.2e-74 282.0 200 71.5
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 8.9e-74 281.2 279 56.6
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 3.4e-73 279.3 201 67.7
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 3.4e-73 279.3 200 67.5
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 4.4e-73 278.9 180 78.3
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 4.4e-73 278.9 197 70.6
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 5.7e-73 278.5 205 67.3
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 5.7e-73 278.5 196 70.9
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 7.5e-73 278.1 189 74.1
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 1.1e-71 274.2 198 68.2
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 1.2e-70 270.8 185 74.1
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 4.3e-68 262.3 177 72.9
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 1.4e-66 257.3 177 72.9
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 8.3e-64 248.1 179 70.4
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 3.5e-62 242.7 184 69.6
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 4.6e-62 242.3 272 52.6
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 2.3e-61 240.0 244 55.3
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 5.0e-61 238.8 243 55.1
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 4.3e-60 235.7 169 71.0
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 1.2e-59 234.2 185 68.1
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 6.2e-59 231.9 235 55.7
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 1.7e-56 223.8 165 67.3
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 1.7e-56 223.8 165 67.3
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 1.3e-53 214.2 257 50.2
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 9.5e-52 208.0 284 47.2
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 1.4e-50 204.1 190 59.5
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 1.2e-49 201.1 131 77.1
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 5.4e-47 192.2 228 45.6
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 1.3e-45 187.6 110 80.9
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 1.1e-42 177.9 218 45.9
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 1.3e-40 171.0 112 75.0
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 5.1e-37 159.1 93 82.8
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 4.9e-32 142.5 87 78.2
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 1.4e-31 141.0 220 43.6
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 5.1e-29 132.5 206 41.7
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 4.0e-26 122.9 207 38.6
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 1.2e-25 121.3 210 36.2
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 3.8e-24 116.3 200 37.5
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 5.5e-23 112.5 203 34.5
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 3.5e-22 109.8 114 52.6
CAN.G248.14 Capsicum annuum HOM05D001108 ORTHO05D005418 1.0e-21 108.2 70 72.9
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 1.3e-21 107.8 138 48.6
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 1.3e-16 91.3 201 31.3
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 2.2e-16 90.5 151 38.4
Medtr4g063470 Medicago truncatula HOM05D001108 ORTHO05D005418 3.5e-14 83.2 66 65.2
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 1.0e-13 81.6 111 47.7
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 1.0e-08 65.1 65 55.4
BolC9t54441H Brassica oleracea HOM05D001108 ORTHO05D005418 1.7e-08 64.3 38 76.3
Psat0s773g0040 Pisum sativum HOM05D001108 ORTHO05D005418 6.5e-08 62.4 146 34.9
MBI06_g06479_MAGBIO Magnolia biondii HOM05D001108 ORTHO05D005418 8.4e-08 62.0 70 55.7


User provided reference genes

Program Settings