Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.019G100001 Populus trichocarpa HOM05D002160 ORTHO05D002012 1.5e-25 119.0 74 100.0
Potri.013G131200 Populus trichocarpa HOM05D002160 ORTHO05D002012 2.3e-21 105.1 74 90.5
Potri.001G040200 Populus trichocarpa HOM05D002160 ORTHO05D002012 1.5e-20 102.4 73 90.4
Potri.001G041268 Populus trichocarpa HOM05D002160 ORTHO05D002012 1.5e-20 102.4 73 90.4
TWI31G0095 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 1.3e-16 89.4 75 58.7
Potri.001G239650 Populus trichocarpa HOM05D002160 ORTHO05D002012 3.8e-16 87.8 55 72.7
Potri.009G030800 Populus trichocarpa HOM05D002160 ORTHO05D002012 1.9e-15 85.5 57 71.9
Atru.chr3.3900 Acer truncatum HOM05D002160 ORTHO05D002012 7.1e-15 83.6 73 74.0
Atru.chr3.3901 Acer truncatum HOM05D002160 ORTHO05D002012 7.1e-15 83.6 73 74.0
Cfa011500 Carpinus fangiana HOM05D002160 ORTHO05D002012 2.1e-14 82.0 70 70.0
TWI31G0178 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 2.3e-13 78.6 55 63.6
MD11G1109200 Malus domestica HOM05D015563 ORTHO05D002012 3.0e-13 78.2 69 78.3
TWI31G0007 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 3.0e-13 78.2 55 61.8
Haze_24095 Corylus avellana HOM05D002160 ORTHO05D002012 3.9e-13 77.8 70 67.1
MD03G1093800 Malus domestica HOM05D015563 ORTHO05D002012 3.9e-13 77.8 69 79.7
MD11G1109300 Malus domestica HOM05D015563 ORTHO05D002012 3.9e-13 77.8 69 79.7
TWI79G1473 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 3.9e-13 77.8 55 65.5
CiPaw.09G192500 Carya illinoinensis HOM05D002160 ORTHO05D002012 6.7e-13 77.0 55 61.8
CiPaw.14G068500 Carya illinoinensis HOM05D002160 ORTHO05D002012 8.7e-13 76.6 71 56.3
GSVIVG01034174001 Vitis vinifera HOM05D002160 ORTHO05D002012 8.7e-13 76.6 56 67.9
Atru.chr3.3902 Acer truncatum HOM05D002160 ORTHO05D002012 1.5e-12 75.9 57 70.2
Haze_11621 Corylus avellana HOM05D002160 ORTHO05D002012 1.9e-12 75.5 56 66.1
Prupe.6G077800 Prunus persica HOM05D002160 ORTHO05D002012 1.9e-12 75.5 69 68.1
Prupe.6G077900 Prunus persica HOM05D002160 ORTHO05D002012 1.9e-12 75.5 70 65.7
MD11G1109100 Malus domestica HOM05D002160 ORTHO05D002012 3.3e-12 74.7 55 83.6
CSS0038374 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 5.6e-12 73.9 55 60.0
Cfa017382 Carpinus fangiana HOM05D002160 ORTHO05D002012 5.6e-12 73.9 55 65.5
Haze_20789 Corylus avellana HOM05D002160 ORTHO05D002012 5.6e-12 73.9 55 67.3
Gohir.A04G082400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 7.4e-12 73.6 55 58.2
TAR369G0024 Trochodendron aralioides HOM05D002160 ORTHO05D002012 7.4e-12 73.6 56 62.5
Actinidia26465 Actinidia chinensis HOM05D002160 ORTHO05D002012 9.6e-12 73.2 55 60.0
CiPaw.03G262000 Carya illinoinensis HOM05D002160 ORTHO05D002012 9.6e-12 73.2 74 50.0
CiPaw.10G145500 Carya illinoinensis HOM05D002160 ORTHO05D002012 9.6e-12 73.2 73 58.9
CiPaw.13G094600 Carya illinoinensis HOM05D002160 ORTHO05D002012 9.6e-12 73.2 58 67.2
Duzib093G1046 Durio zibethinus HOM05D002160 ORTHO05D002012 9.6e-12 73.2 55 56.4
Gohir.D04G121400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 9.6e-12 73.2 55 58.2
CSS0042900 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 1.3e-11 72.8 55 58.2
Dinv35604 Davidia involucrata HOM05D002160 ORTHO05D002012 1.6e-11 72.4 56 60.7
Gorai.012G103800 Gossypium raimondii HOM05D002160 ORTHO05D002012 2.8e-11 71.6 55 56.4
MD03G1093900 Malus domestica HOM05D002160 ORTHO05D002012 2.8e-11 71.6 71 73.2
MD03G1094500 Malus domestica HOM05D015563 ORTHO05D002012 2.8e-11 71.6 68 73.5
Duzib106G1044 Durio zibethinus HOM05D002160 ORTHO05D002012 4.8e-11 70.9 55 56.4
Oeu007792.1 Olea europaea HOM05D002160 ORTHO05D002012 4.8e-11 70.9 57 57.9
PGR004G1599 Punica granatum HOM05D002160 ORTHO05D002012 4.8e-11 70.9 56 57.1
TAR633G1907 Trochodendron aralioides HOM05D002160 ORTHO05D002012 4.8e-11 70.9 55 54.5
Duzib128G1340 Durio zibethinus HOM05D002160 ORTHO05D002012 6.2e-11 70.5 55 54.5
Gohir.D01G211900 Gossypium hirsutum HOM05D002160 ORTHO05D002012 8.1e-11 70.1 55 52.7
Gorai.002G257700 Gossypium raimondii HOM05D002160 ORTHO05D002012 8.1e-11 70.1 55 52.7
GSVIVG01027808001 Vitis vinifera HOM05D002160 ORTHO05D002012 1.4e-10 69.3 56 62.5
COL.COLO4_14799 Corchorus olitorius HOM05D002160 ORTHO05D002012 1.8e-10 68.9 55 54.5
MBI14_g20107_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 1.8e-10 68.9 56 57.1
Manes.01G174400 Manihot esculenta HOM05D002160 ORTHO05D002012 1.8e-10 68.9 57 73.7
Sabra19G0112000 Salix brachista HOM05D002160 ORTHO05D002012 1.8e-10 68.9 57 63.2
Duzib168G0776 Durio zibethinus HOM05D002160 ORTHO05D002012 2.4e-10 68.6 71 70.4
Rhsim05G0192600 Rhododendron simsii HOM05D002160 ORTHO05D002012 2.4e-10 68.6 55 54.5
Gohir.A01G222400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 3.1e-10 68.2 55 50.9
Dinv37174 Davidia involucrata HOM05D002160 ORTHO05D002012 4.0e-10 67.8 56 57.1
Manes.01G174200 Manihot esculenta HOM05D002160 ORTHO05D002012 4.0e-10 67.8 57 71.9
Haze_24094 Corylus avellana HOM05D002160 ORTHO05D002012 9.0e-10 66.6 76 67.1
Glyma.07G132000 Glycine max HOM05D002160 ORTHO05D002012 9.0e-10 66.6 56 55.4
FvH4_3g36030 Fragaria vesca HOM05D024790 ORTHO05D025476 1.2e-09 66.2 72 73.6
FAN16G3235 Fragaria x ananassa HOM05D024790 ORTHO05D025476 1.2e-09 66.2 72 73.6
RcHm_v2.0_Chr5g0064481 Rosa chinensis HOM05D024790 ORTHO05D025476 1.5e-09 65.9 73 75.3
arahy.Tifrunner.gnm1.ann1.N3YTXC Arachis hypogaea HOM05D002160 ORTHO05D002012 2.0e-09 65.5 73 56.2
MD11G1109400 Malus domestica HOM05D002160 ORTHO05D002012 2.0e-09 65.5 71 73.2
Thecc.05G039800 Theobroma cacao HOM05D002160 ORTHO05D002012 2.6e-09 65.1 59 50.8
Glyma.18G180800 Glycine max HOM05D002160 ORTHO05D002012 3.4e-09 64.7 56 53.6
Oeu011407.1 Olea europaea HOM05D002160 ORTHO05D002012 3.4e-09 64.7 58 51.7
Phvul.008G101800 Phaseolus vulgaris HOM05D002160 ORTHO05D002012 3.4e-09 64.7 56 53.6
QL07p048273 Quercus lobata HOM05D002160 ORTHO05D002012 3.4e-09 64.7 55 60.0
Manes.08G079000 Manihot esculenta HOM05D002160 ORTHO05D002012 4.5e-09 64.3 56 57.1
FAN21G3063 Fragaria x ananassa HOM05D015563 ORTHO05D002012 5.8e-09 63.9 71 57.7
Lj3g0006632 Lotus japonicus HOM05D002160 ORTHO05D002012 5.8e-09 63.9 75 65.3
Lalb_Chr19g0125331 Lupinus albus HOM05D002160 ORTHO05D002012 5.8e-09 63.9 56 55.4
MD12G1141500 Malus domestica HOM05D002160 ORTHO05D002012 5.8e-09 63.9 55 52.7
Oeu036147.1 Olea europaea HOM05D002160 ORTHO05D002012 5.8e-09 63.9 56 53.6
CANSAT35G0429 Cannabis sativa HOM05D002160 ORTHO05D002012 7.6e-09 63.5 56 55.4
Ca_07544_v3 Cicer arietinum L. HOM05D002160 ORTHO05D002012 7.6e-09 63.5 56 51.8
Cfa011502 Carpinus fangiana HOM05D002160 ORTHO05D002012 1.0e-08 63.2 97 49.5
FAN25G1725 Fragaria x ananassa HOM05D024790 ORTHO05D025476 1.0e-08 63.2 72 72.2
Cpa.g.sc81.153 Carica papaya HOM05D002160 ORTHO05D002012 1.3e-08 62.8 56 55.4
Cfa011499 Carpinus fangiana HOM05D002160 ORTHO05D002012 1.3e-08 62.8 74 66.2
Lalb_Chr03g0042231 Lupinus albus HOM05D002160 ORTHO05D002012 1.3e-08 62.8 56 50.0
Glyma.17G230500 Glycine max HOM05D002160 ORTHO05D002012 1.7e-08 62.4 76 56.6
Lj3g0021630 Lotus japonicus HOM05D002160 ORTHO05D002012 1.7e-08 62.4 57 52.6
Manes.07G091300 Manihot esculenta HOM05D002160 ORTHO05D002012 1.7e-08 62.4 57 70.2
VMungo1383G3367 Vigna mungo HOM05D002160 ORTHO05D002012 1.7e-08 62.4 54 51.9
arahy.Tifrunner.gnm1.ann1.SS44WU Arachis hypogaea HOM05D002160 ORTHO05D002012 2.2e-08 62.0 75 56.0
Manes.08G079200 Manihot esculenta HOM05D002160 ORTHO05D002012 2.2e-08 62.0 56 51.8
Manes.08G079262 Manihot esculenta HOM05D002160 ORTHO05D002012 2.2e-08 62.0 59 50.8
Medtr4g021725 Medicago truncatula HOM05D002160 ORTHO05D002012 2.2e-08 62.0 76 56.6
Prupe.6G255100 Prunus persica HOM05D002160 ORTHO05D002012 2.2e-08 62.0 53 50.9
QL07p048278 Quercus lobata HOM05D002160 ORTHO05D002012 2.2e-08 62.0 55 58.2
CiPaw.13G094500 Carya illinoinensis HOM05D002160 ORTHO05D002012 2.9e-08 61.6 56 71.4
QL01p032020 Quercus lobata HOM05D002160 ORTHO05D002012 2.9e-08 61.6 55 70.9
Sp6g40100 Schrenkiella parvula HOM05D002160 ORTHO05D002012 2.9e-08 61.6 74 48.6
MD04G1128900 Malus domestica HOM05D002160 ORTHO05D002012 3.8e-08 61.2 53 50.9
Sabra06G0064700 Salix brachista HOM05D002160 ORTHO05D002012 4.9e-08 60.8 55 50.9
Glyma.14G093100 Glycine max HOM05D002160 ORTHO05D002012 6.5e-08 60.5 76 56.6
Manes.08G079293 Manihot esculenta HOM05D002160 ORTHO05D002012 6.5e-08 60.5 56 53.6
Nn1g03685 Nelumbo nucifera HOM05D002160 ORTHO05D002012 6.5e-08 60.5 57 56.1
Oeu049244.1 Olea europaea HOM05D002160 ORTHO05D002012 6.5e-08 60.5 77 48.1
arahy.Tifrunner.gnm1.ann1.EU8JQM Arachis hypogaea HOM05D002160 ORTHO05D002012 8.4e-08 60.1 57 50.9
arahy.Tifrunner.gnm1.ann1.FFQQ4A Arachis hypogaea HOM05D002160 ORTHO05D002012 8.4e-08 60.1 57 50.9
Eucgr.A01262 Eucalyptus grandis HOM05D002160 ORTHO05D002012 8.4e-08 60.1 57 47.4
Manes.02G133200 Manihot esculenta HOM05D002160 ORTHO05D002012 8.4e-08 60.1 57 68.4
SalBow3G1804 Salvia bowleyana HOM05D002160 ORTHO05D002012 8.4e-08 60.1 74 52.7
Actinidia05312 Actinidia chinensis HOM05D002160 ORTHO05D002012 1.1e-07 59.7 54 53.7
COL.COLO4_19168 Corchorus olitorius HOM05D002160 ORTHO05D002012 1.9e-07 58.9 50 52.0
Migut.D02103 Erythranthe guttata HOM05D022828 ORTHO05D002012 1.9e-07 58.9 73 67.1
Thhalv10015167m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 1.9e-07 58.9 74 47.3
FvH4_3g36020 Fragaria vesca HOM05D015563 ORTHO05D002012 1.9e-07 58.9 71 66.2
FAN25G2991 Fragaria x ananassa HOM05D015563 ORTHO05D002012 1.9e-07 58.9 71 66.2
CSS0026015 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 2.5e-07 58.5 66 45.5
Ca_03759_v3 Cicer arietinum L. HOM05D002160 ORTHO05D002012 2.5e-07 58.5 76 52.6
FAN21G1939 Fragaria x ananassa HOM05D024790 ORTHO05D025476 2.5e-07 58.5 76 71.1
Gohir.A13G224300 Gossypium hirsutum HOM05D002160 ORTHO05D002012 2.5e-07 58.5 73 57.5
Oeu051930.1 Olea europaea HOM05D002160 ORTHO05D002012 2.5e-07 58.5 60 50.0
Potri.006G085200 Populus trichocarpa HOM05D002160 ORTHO05D002012 2.5e-07 58.5 56 51.8
BcaC03g18434 Brassica carinata HOM05D002160 ORTHO05D002012 3.2e-07 58.2 70 51.4
BcaNung02128 Brassica carinata HOM05D002160 ORTHO05D002012 3.2e-07 58.2 74 45.9
A10p33280 Brassica napus HOM05D002160 ORTHO05D002012 3.2e-07 58.2 74 45.9
C09p74190 Brassica napus HOM05D002160 ORTHO05D002012 3.2e-07 58.2 74 45.9
BolC9t60152H Brassica oleracea HOM05D002160 ORTHO05D002012 3.2e-07 58.2 74 45.9
Gohir.D13G229100 Gossypium hirsutum HOM05D002160 ORTHO05D002012 3.2e-07 58.2 73 56.2
Gorai.013G260000 Gossypium raimondii HOM05D002160 ORTHO05D002012 3.2e-07 58.2 73 56.2
Psat7g239160 Pisum sativum HOM05D002160 ORTHO05D002012 3.2e-07 58.2 76 53.9
Gohir.A11G326800 Gossypium hirsutum HOM05D002160 ORTHO05D002012 4.2e-07 57.8 55 58.2
Gorai.007G376000 Gossypium raimondii HOM05D002160 ORTHO05D002012 4.2e-07 57.8 70 50.0
Rhsim04G0157100 Rhododendron simsii HOM05D002160 ORTHO05D002012 4.2e-07 57.8 56 57.1
Dinv12424 Davidia involucrata HOM05D002160 ORTHO05D002012 5.5e-07 57.4 55 52.7
Dinv17000 Davidia involucrata HOM05D002160 ORTHO05D002012 5.5e-07 57.4 55 52.7
Dinv42949 Davidia involucrata HOM05D002160 ORTHO05D002012 5.5e-07 57.4 55 52.7
Dinv43151 Davidia involucrata HOM05D002160 ORTHO05D002012 5.5e-07 57.4 55 52.7
Migut.D02104 Erythranthe guttata HOM05D022828 ORTHO05D002012 5.5e-07 57.4 73 67.1
Gohir.D11G345700 Gossypium hirsutum HOM05D002160 ORTHO05D002012 5.5e-07 57.4 70 50.0
MD16G1208900 Malus domestica HOM05D002160 ORTHO05D002012 7.1e-07 57.0 78 39.7
THA.LOC104816271 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 9.3e-07 56.6 58 55.2
TPR.G23304 Trifolium pratense HOM05D002160 ORTHO05D002012 9.3e-07 56.6 56 48.2
Medtr4g021730 Medicago truncatula HOM05D002160 ORTHO05D002012 1.2e-06 56.2 76 52.6
Gohir.D13G229300 Gossypium hirsutum HOM05D002160 ORTHO05D002012 1.6e-06 55.8 73 56.2
Thecc.05G201700 Theobroma cacao HOM05D002160 ORTHO05D002012 1.6e-06 55.8 54 53.7
CiPaw.10G145400 Carya illinoinensis HOM05D002160 ORTHO05D002012 2.1e-06 55.5 54 51.9
Lalb_Chr12g0210241 Lupinus albus HOM05D002160 ORTHO05D002012 2.1e-06 55.5 74 54.1
RcHm_v2.0_Chr5g0064451 Rosa chinensis HOM05D015563 ORTHO05D002012 2.7e-06 55.1 71 64.8
GSVIVG01024969001 Vitis vinifera HOM05D059473 ORTHO05D002012 2.7e-06 55.1 80 65.0
Ca_03760_v3 Cicer arietinum L. HOM05D002160 ORTHO05D002012 3.5e-06 54.7 77 51.9
THA.LOC104823261 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 3.5e-06 54.7 58 50.0
AT3G09390 Arabidopsis thaliana HOM05D002160 ORTHO05D002012 4.6e-06 54.3 58 55.2
FAN16G2279 Fragaria x ananassa HOM05D015563 ORTHO05D002012 4.6e-06 54.3 71 63.4
Nitab4.5_0006455g0010 Nicotiana tabacum HOM05D002160 ORTHO05D002012 4.6e-06 54.3 55 45.5
BcaC05g29516 Brassica carinata HOM05D002160 ORTHO05D002012 6.0e-06 53.9 57 50.9
BcaNung06991 Brassica carinata HOM05D002160 ORTHO05D002012 6.0e-06 53.9 71 46.5
C02p00440 Brassica napus HOM05D002160 ORTHO05D002012 6.0e-06 53.9 71 46.5
BolC2t06044H Brassica oleracea HOM05D002160 ORTHO05D002012 6.0e-06 53.9 71 46.5
MBI14_g20106_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 6.0e-06 53.9 40 62.5
MD06G1098000 Malus domestica HOM05D002160 ORTHO05D002012 6.0e-06 53.9 53 43.4
A05p39590 Brassica napus HOM05D002160 ORTHO05D002012 7.9e-06 53.5 57 50.9
BraA05t22740Z Brassica rapa HOM05D002160 ORTHO05D002012 7.9e-06 53.5 57 50.9
Cpa.g.sc228.19 Carica papaya HOM05D002160 ORTHO05D002012 7.9e-06 53.5 58 43.1
TWI74G0912 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 7.9e-06 53.5 52 48.1


User provided reference genes

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