Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.019G098550 Populus trichocarpa HOM05D000005 ORTHO05D000012 1.6e-117 426.0 201 100.0
Potri.019G097100 Populus trichocarpa HOM05D000005 ORTHO05D000012 1.2e-109 399.8 201 94.5
Sabra19G0099000 Salix brachista HOM05D000005 ORTHO05D000012 4.4e-75 285.0 155 84.5
Potri.019G097720 Populus trichocarpa HOM05D000005 ORTHO05D000012 6.3e-74 281.2 182 74.2
Potri.019G098900 Populus trichocarpa HOM05D000005 ORTHO05D000012 2.0e-72 276.2 204 69.1
Potri.019G097800 Populus trichocarpa HOM05D000005 ORTHO05D000012 1.3e-71 273.5 183 72.7
Potri.019G098700 Populus trichocarpa HOM05D000005 ORTHO05D000012 1.6e-69 266.5 188 71.8
Sabra19G0098900 Salix brachista HOM05D000005 ORTHO05D037491 4.4e-51 205.3 196 58.2
Sabra19G0099100 Salix brachista HOM05D002530 ORTHO05D000012 1.7e-42 176.8 166 56.6
Sabra19G0108800 Salix brachista HOM05D002317 ORTHO05D002420 6.0e-40 168.3 174 52.9
Sabra19G0108500 Salix brachista HOM05D000005 ORTHO05D000012 3.7e-34 149.1 76 88.2
Sabra16G0302500 Salix brachista HOM05D000005 ORTHO05D000012 1.2e-29 134.0 185 42.7
Sabra19G0109400 Salix brachista HOM05D000005 ORTHO05D000294 1.2e-29 134.0 87 72.4
Potri.017G010800 Populus trichocarpa HOM05D000005 ORTHO05D000012 1.6e-29 133.7 185 42.7
Sabra19G0102900 Salix brachista HOM05D000005 ORTHO05D000012 4.6e-24 115.5 60 86.7
Potri.019G068200 Populus trichocarpa HOM05D000005 ORTHO05D000012 6.6e-23 111.7 174 39.7
Potri.019G068300 Populus trichocarpa HOM05D000005 ORTHO05D000012 6.9e-20 101.7 175 37.1
Sabra19G0081800 Salix brachista HOM05D000005 ORTHO05D000012 3.1e-12 76.3 111 40.5
TWI77G0687 Tripterygium wilfordii HOM05D000005 ORTHO05D000012 4.9e-10 68.9 172 29.1
Gohir.D11G295266 Gossypium hirsutum HOM05D000005 ORTHO05D000012 6.4e-10 68.6 166 35.5
RcHm_v2.0_Chr1g0328941 Rosa chinensis HOM05D000005 ORTHO05D001748 1.1e-09 67.8 177 30.5
TWI53G1170 Tripterygium wilfordii HOM05D000005 ORTHO05D000012 1.9e-09 67.0 171 27.5
Gorai.007G319000 Gossypium raimondii HOM05D000005 ORTHO05D000012 2.4e-09 66.6 166 34.3
Manes.18G107900 Manihot esculenta HOM05D000005 ORTHO05D000012 2.4e-09 66.6 178 29.8
Ciclev10018520m.g Citrus clementina HOM05D000005 ORTHO05D000012 4.2e-09 65.9 160 34.4
Ciclev10018526m.g Citrus clementina HOM05D000005 ORTHO05D000012 4.2e-09 65.9 160 34.4
RcHm_v2.0_Chr1g0322781 Rosa chinensis HOM05D000005 ORTHO05D000012 4.2e-09 65.9 179 31.8
TWI53G1651 Tripterygium wilfordii HOM05D000005 ORTHO05D000012 5.4e-09 65.5 165 27.3
RcHm_v2.0_Chr1g0323761 Rosa chinensis HOM05D000005 ORTHO05D000012 7.1e-09 65.1 176 30.1
Gorai.007G318700 Gossypium raimondii HOM05D000005 ORTHO05D000012 9.3e-09 64.7 162 35.2
TWI53G1212 Tripterygium wilfordii HOM05D000005 ORTHO05D000012 9.3e-09 64.7 160 28.1
Gohir.D11G296000 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.2e-08 64.3 165 33.9
Manes.02G199900 Manihot esculenta HOM05D000005 ORTHO05D000012 1.2e-08 64.3 169 28.4
Manes.18G108400 Manihot esculenta HOM05D000005 ORTHO05D000012 1.2e-08 64.3 167 30.5
RcHm_v2.0_Chr1g0322521 Rosa chinensis HOM05D000005 ORTHO05D001748 1.2e-08 64.3 176 30.1
MD12G1125200 Malus domestica HOM05D000005 ORTHO05D000012 1.6e-08 63.9 173 30.1
RcHm_v2.0_Chr1g0321301 Rosa chinensis HOM05D000005 ORTHO05D001748 1.6e-08 63.9 177 30.5
TWI53G1046 Tripterygium wilfordii HOM05D000005 ORTHO05D000012 1.6e-08 63.9 195 22.6
Gohir.A11G282526 Gossypium hirsutum HOM05D000005 ORTHO05D000012 2.1e-08 63.5 175 29.1
QL09p031857 Quercus lobata HOM05D000005 ORTHO05D000012 2.1e-08 63.5 173 24.9
RcHm_v2.0_Chr1g0323221 Rosa chinensis HOM05D000005 ORTHO05D000012 3.5e-08 62.8 182 27.5
RcHm_v2.0_Chr1g0322651 Rosa chinensis HOM05D000005 ORTHO05D000012 4.6e-08 62.4 177 29.4
TWI77G0894 Tripterygium wilfordii HOM05D000005 ORTHO05D000012 4.6e-08 62.4 172 27.3
Manes.02G205900 Manihot esculenta HOM05D000005 ORTHO05D000012 6.0e-08 62.0 169 31.4
Manes.02G202166 Manihot esculenta HOM05D000005 ORTHO05D000012 7.9e-08 61.6 104 34.6
Atru.chr12.1321 Acer truncatum HOM05D000005 ORTHO05D000012 1.0e-07 61.2 163 29.4
Ciclev10018612m.g Citrus clementina HOM05D000005 ORTHO05D000012 1.0e-07 61.2 164 29.3
TWI53G0533 Tripterygium wilfordii HOM05D000005 ORTHO05D000012 1.0e-07 61.2 164 28.0
Gohir.A11G283852 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.3e-07 60.8 161 29.8
Gohir.D11G295400 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.8e-07 60.5 180 30.6
QL04p089183 Quercus lobata HOM05D000005 ORTHO05D000012 1.8e-07 60.5 170 25.9
Ciclev10018627m.g Citrus clementina HOM05D000005 ORTHO05D000012 2.3e-07 60.1 175 28.6
QL03p053384 Quercus lobata HOM05D000005 ORTHO05D026089 2.3e-07 60.1 183 25.1
Gohir.A11G283813 Gossypium hirsutum HOM05D000005 ORTHO05D000012 3.0e-07 59.7 162 32.7
Gohir.D11G312500 Gossypium hirsutum HOM05D000005 ORTHO05D000012 3.0e-07 59.7 177 28.2
MD05G1018900 Malus domestica HOM05D000005 ORTHO05D000012 3.9e-07 59.3 57 47.4
RcHm_v2.0_Chr1g0319431 Rosa chinensis HOM05D000005 ORTHO05D001748 3.9e-07 59.3 177 28.8
TWI53G1757 Tripterygium wilfordii HOM05D000005 ORTHO05D000012 3.9e-07 59.3 171 26.3
Atru.chr12.1320 Acer truncatum HOM05D000005 ORTHO05D000012 5.1e-07 58.9 163 29.4
Gorai.007G318900 Gossypium raimondii HOM05D000005 ORTHO05D000012 5.1e-07 58.9 176 29.5
Prupe.8G031800 Prunus persica HOM05D000005 ORTHO05D000012 5.1e-07 58.9 59 45.8
QL09p004209 Quercus lobata HOM05D000005 ORTHO05D000012 5.1e-07 58.9 47 51.1
TWI53G0861 Tripterygium wilfordii HOM05D000005 ORTHO05D000012 5.1e-07 58.9 182 24.7
Gohir.A11G282552 Gossypium hirsutum HOM05D000005 ORTHO05D000012 6.7e-07 58.5 164 31.1
RcHm_v2.0_Chr1g0322381 Rosa chinensis HOM05D000005 ORTHO05D000012 6.7e-07 58.5 170 30.6
Gohir.D11G312054 Gossypium hirsutum HOM05D000005 ORTHO05D000012 8.7e-07 58.2 175 27.4
RcHm_v2.0_Chr1g0323411 Rosa chinensis HOM05D000005 ORTHO05D001748 8.7e-07 58.2 177 28.2
RcHm_v2.0_Chr6g0250551 Rosa chinensis HOM05D000005 ORTHO05D000012 8.7e-07 58.2 166 25.9
Gohir.D11G295200 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.1e-06 57.8 172 29.1
Gohir.D11G295925 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.1e-06 57.8 170 31.2
Gorai.007G318500 Gossypium raimondii HOM05D000005 ORTHO05D000012 1.1e-06 57.8 172 29.1
QL04p087602 Quercus lobata HOM05D000005 ORTHO05D000012 1.1e-06 57.8 172 29.1
Ciclev10018693m.g Citrus clementina HOM05D000005 ORTHO05D000012 1.5e-06 57.4 175 26.3
Ciclev10019444m.g Citrus clementina HOM05D000005 ORTHO05D019027 1.5e-06 57.4 43 58.1
FAN20G0525 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.5e-06 57.4 58 44.8
Gohir.D11G295775 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.5e-06 57.4 165 30.9
MD10G1018900 Malus domestica HOM05D000005 ORTHO05D000012 1.5e-06 57.4 51 52.9
MD10G1035400 Malus domestica HOM05D000005 ORTHO05D001748 1.5e-06 57.4 47 51.1
QL11p010296 Quercus lobata HOM05D000005 ORTHO05D000012 1.5e-06 57.4 77 37.7
RcHm_v2.0_Chr1g0322961 Rosa chinensis HOM05D000005 ORTHO05D000012 1.5e-06 57.4 177 27.7
RcHm_v2.0_Chr1g0323501 Rosa chinensis HOM05D000005 ORTHO05D001748 1.5e-06 57.4 177 27.7
Gohir.A11G282539 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.9e-06 57.0 163 31.9
Lsat_1_v5_gn_5_104140 Lactuca sativa HOM05D000005 ORTHO05D000012 1.9e-06 57.0 60 45.0
QL05p028400 Quercus lobata HOM05D000005 ORTHO05D000012 1.9e-06 57.0 171 26.9
RcHm_v2.0_Chr1g0322941 Rosa chinensis HOM05D000005 ORTHO05D000012 1.9e-06 57.0 172 29.7
FAN19G2490 Fragaria x ananassa HOM05D000005 ORTHO05D000012 2.5e-06 56.6 80 36.2
Prupe.6G160100 Prunus persica HOM05D000005 ORTHO05D000012 2.5e-06 56.6 45 51.1
QL09p048934 Quercus lobata HOM05D000005 ORTHO05D000012 2.5e-06 56.6 176 30.7
QL11p010312 Quercus lobata HOM05D000005 ORTHO05D000012 2.5e-06 56.6 166 24.1
RcHm_v2.0_Chr1g0322701 Rosa chinensis HOM05D000005 ORTHO05D001748 2.5e-06 56.6 166 27.1
RcHm_v2.0_Chr6g0250871 Rosa chinensis HOM05D000005 ORTHO05D000012 2.5e-06 56.6 166 25.3
Ciclev10018524m.g Citrus clementina HOM05D000005 ORTHO05D000012 3.3e-06 56.2 156 31.4
FvH4_1g22390 Fragaria vesca HOM05D000005 ORTHO05D000294 3.3e-06 56.2 80 36.2
QL09p000406 Quercus lobata HOM05D000005 ORTHO05D000012 3.3e-06 56.2 54 40.7
RcHm_v2.0_Chr1g0322491 Rosa chinensis HOM05D000005 ORTHO05D000012 3.3e-06 56.2 169 27.8
RcHm_v2.0_Chr1g0329001 Rosa chinensis HOM05D000005 ORTHO05D000012 3.3e-06 56.2 177 27.7
Cpa.g.sc2.255 Carica papaya HOM05D000005 ORTHO05D000012 4.3e-06 55.8 176 29.5
Ciclev10018544m.g Citrus clementina HOM05D000005 ORTHO05D000012 4.3e-06 55.8 92 39.1
Prupe.8G046500 Prunus persica HOM05D000005 ORTHO05D000012 4.3e-06 55.8 53 47.2
QL03p065059 Quercus lobata HOM05D000005 ORTHO05D000012 4.3e-06 55.8 167 26.9
QL05p028426 Quercus lobata HOM05D000005 ORTHO05D000012 4.3e-06 55.8 171 26.9
QL09p000751 Quercus lobata HOM05D000005 ORTHO05D000012 4.3e-06 55.8 47 51.1
QL10p051120 Quercus lobata HOM05D000005 ORTHO05D000012 4.3e-06 55.8 176 28.4
QL11p010027 Quercus lobata HOM05D000005 ORTHO05D000012 4.3e-06 55.8 77 37.7
Ciclev10024233m.g Citrus clementina HOM05D000005 ORTHO05D000012 5.6e-06 55.5 43 55.8
Ciclev10024480m.g Citrus clementina HOM05D000005 ORTHO05D000012 5.6e-06 55.5 41 61.0
Ciclev10024534m.g Citrus clementina HOM05D000005 ORTHO05D000012 5.6e-06 55.5 71 39.4
FAN24G3397 Fragaria x ananassa HOM05D000005 ORTHO05D000012 5.6e-06 55.5 171 25.1
MD10G1018400 Malus domestica HOM05D000005 ORTHO05D001748 5.6e-06 55.5 44 56.8
QL05p031496 Quercus lobata HOM05D000005 ORTHO05D000012 5.6e-06 55.5 171 25.7
QL09p000413 Quercus lobata HOM05D000005 ORTHO05D001748 5.6e-06 55.5 56 46.4
RcHm_v2.0_Chr6g0250931 Rosa chinensis HOM05D000005 ORTHO05D000012 5.6e-06 55.5 174 25.9
MD10G1034700 Malus domestica HOM05D000005 ORTHO05D001748 7.4e-06 55.1 47 48.9
Prupe.8G023800 Prunus persica HOM05D000005 ORTHO05D000012 7.4e-06 55.1 61 42.6
RcHm_v2.0_Chr1g0322041 Rosa chinensis HOM05D000005 ORTHO05D000012 7.4e-06 55.1 167 25.7
RcHm_v2.0_Chr2g0101061 Rosa chinensis HOM05D000005 ORTHO05D000012 7.4e-06 55.1 170 25.3
RcHm_v2.0_Chr6g0276591 Rosa chinensis HOM05D000005 ORTHO05D001748 7.4e-06 55.1 46 50.0
Cpa.g.sc2.256 Carica papaya HOM05D000005 ORTHO05D000012 9.6e-06 54.7 170 27.1
Duzib268G1381 Durio zibethinus HOM05D000005 ORTHO05D000012 9.6e-06 54.7 182 26.4
Gohir.D11G295700 Gossypium hirsutum HOM05D000005 ORTHO05D000012 9.6e-06 54.7 163 30.7
Gorai.007G319200 Gossypium raimondii HOM05D000005 ORTHO05D000012 9.6e-06 54.7 163 30.7
MD10G1015300 Malus domestica HOM05D000005 ORTHO05D000012 9.6e-06 54.7 49 51.0
Peaxi162Scf00036g00711 Petunia axillaris HOM05D000005 ORTHO05D000012 9.6e-06 54.7 109 32.1
Prupe.8G041000 Prunus persica HOM05D000005 ORTHO05D000012 9.6e-06 54.7 75 37.3
RcHm_v2.0_Chr6g0246501 Rosa chinensis HOM05D000005 ORTHO05D001748 9.6e-06 54.7 177 27.1
GSVIVG01015681001 Vitis vinifera HOM05D000005 ORTHO05D001748 9.6e-06 54.7 52 51.9


User provided reference genes

Program Settings