Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.019G096500 Populus trichocarpa HOM05D007605 ORTHO05D009572 6.5e-28 126.7 66 100.0
Potri.019G096700 Populus trichocarpa HOM05D007605 ORTHO05D009572 4.2e-27 124.0 64 100.0
Sabra19G0108500 Salix brachista HOM05D000005 ORTHO05D000012 3.6e-26 120.9 64 96.9
Sabra13G0106700 Salix brachista HOM05D007605 ORTHO05D009572 7.5e-24 113.2 64 92.2
Haze_00851 Corylus avellana HOM05D007605 ORTHO05D009572 6.3e-23 110.2 64 84.4
Cfa015674 Carpinus fangiana HOM05D007605 ORTHO05D009572 1.8e-22 108.6 64 82.8
PGR142G0642 Punica granatum HOM05D007605 ORTHO05D009572 4.5e-21 104.0 64 78.1
Rhsim09G0008600 Rhododendron simsii HOM05D007605 ORTHO05D009572 4.5e-21 104.0 62 82.3
TWI63G1406 Tripterygium wilfordii HOM05D007605 ORTHO05D009572 5.9e-21 103.6 64 81.2
SGA_v2.0_scaffold25G11005 Striga asiatica HOM05D000384 ORTHO05D009572 7.7e-21 103.2 64 81.2
CANSAT01G0287 Cannabis sativa HOM05D007605 ORTHO05D009572 1.3e-20 102.4 64 76.6
MD03G1210800 Malus domestica HOM05D007605 ORTHO05D009572 2.9e-20 101.3 64 76.6
VMungo1383G0010 Vigna mungo HOM05D003647 ORTHO05D004182 5.0e-20 100.5 64 78.1
Prupe.4G204500 Prunus persica HOM05D007605 ORTHO05D009572 8.6e-20 99.8 64 73.4
Cpa.g.sc9.378 Carica papaya HOM05D007605 ORTHO05D009572 1.1e-19 99.4 62 82.3
Nn1g09550 Nelumbo nucifera HOM05D007605 ORTHO05D009572 1.5e-19 99.0 64 73.4
Lj6g0016727 Lotus japonicus HOM05D007605 ORTHO05D009572 1.9e-19 98.6 62 77.4
FAN05G0946 Fragaria x ananassa HOM05D007605 ORTHO05D009572 2.5e-19 98.2 62 75.8
FAN05G3507 Fragaria x ananassa HOM05D007605 ORTHO05D009572 2.5e-19 98.2 62 75.8
Ciclev10023247m.g Citrus clementina HOM05D007605 ORTHO05D009572 3.3e-19 97.8 57 80.7
Migut.N03059 Erythranthe guttata HOM05D007605 ORTHO05D009572 3.3e-19 97.8 64 78.1
SalBow6G4154 Salvia bowleyana HOM05D007605 ORTHO05D009572 3.3e-19 97.8 64 75.0
Sc13g0006890 Simmondsia chinensis HOM05D007605 ORTHO05D009572 3.3e-19 97.8 63 81.0
Glyma.18G297600 Glycine max HOM05D007605 ORTHO05D009572 4.2e-19 97.4 64 75.0
Medtr7g091060 Medicago truncatula HOM05D007605 ORTHO05D009572 4.2e-19 97.4 62 75.8
Ca_14651_v3 Cicer arietinum L. HOM05D007605 ORTHO05D009572 5.5e-19 97.1 62 75.8
Nitab4.5_0007474g0060 Nicotiana tabacum HOM05D007605 ORTHO05D009572 5.5e-19 97.1 64 75.0
Atru.chr4.1455 Acer truncatum HOM05D007605 ORTHO05D009572 7.2e-19 96.7 57 82.5
FvH4_6g21131 Fragaria vesca HOM05D007605 ORTHO05D009572 7.2e-19 96.7 62 74.2
FAN14G0446 Fragaria x ananassa HOM05D007605 ORTHO05D009572 7.2e-19 96.7 62 74.2
Lj6g0006319 Lotus japonicus HOM05D007605 ORTHO05D009572 7.2e-19 96.7 62 75.8
RcHm_v2.0_Chr4g0405791 Rosa chinensis HOM05D007605 ORTHO05D009572 7.2e-19 96.7 64 71.9
MD11G1225700 Malus domestica HOM05D007605 ORTHO05D009572 9.5e-19 96.3 64 73.4
Peaxi162Scf00579g00018 Petunia axillaris HOM05D007605 ORTHO05D009572 9.5e-19 96.3 66 72.7
Thecc.04G164300 Theobroma cacao HOM05D007605 ORTHO05D009572 9.5e-19 96.3 64 76.6
CiPaw.01G168900 Carya illinoinensis HOM05D007605 ORTHO05D009572 1.2e-18 95.9 58 81.0
Ca_08431_v3 Cicer arietinum L. HOM05D007605 ORTHO05D009572 1.2e-18 95.9 62 74.2
Duzib212G0337 Durio zibethinus HOM05D007605 ORTHO05D009572 1.2e-18 95.9 67 77.6
THA.LOC104802329 Tarenaya hassleriana HOM05D007605 ORTHO05D009572 1.2e-18 95.9 63 77.8
Lj1g0002800 Lotus japonicus HOM05D007605 ORTHO05D009572 1.6e-18 95.5 62 74.2
Aqoxy4G02871 Aquilegia oxysepala HOM05D007605 ORTHO05D009572 2.8e-18 94.7 60 75.0
Eucgr.H04449 Eucalyptus grandis HOM05D007605 ORTHO05D009572 2.8e-18 94.7 54 85.2
Lj1g0021920 Lotus japonicus HOM05D007605 ORTHO05D009572 2.8e-18 94.7 62 74.2
arahy.Tifrunner.gnm1.ann1.FBG7WK Arachis hypogaea HOM05D007605 ORTHO05D009572 3.6e-18 94.4 65 73.8
arahy.Tifrunner.gnm1.ann1.MPL0H7 Arachis hypogaea HOM05D007605 ORTHO05D009572 3.6e-18 94.4 65 73.8
Nitab4.5_0004700g0030 Nicotiana tabacum HOM05D001130 ORTHO05D001052 3.6e-18 94.4 62 74.2
RcHm_v2.0_Chr7g0232231 Rosa chinensis HOM05D007605 ORTHO05D009572 3.6e-18 94.4 64 70.3
Glyma.08G364500 Glycine max HOM05D007605 ORTHO05D009572 4.7e-18 94.0 64 71.9
Psat3g074320 Pisum sativum HOM05D007605 ORTHO05D009572 4.7e-18 94.0 62 74.2
COL.COLO4_38114 Corchorus olitorius HOM05D007605 ORTHO05D009572 6.1e-18 93.6 54 83.3
MBI07_g11492_MAGBIO Magnolia biondii HOM05D007605 ORTHO05D009572 6.1e-18 93.6 53 86.8
DCAR_030842 Daucus carota HOM05D007605 ORTHO05D009572 8.0e-18 93.2 64 73.4
TPR.G18242 Trifolium pratense HOM05D007605 ORTHO05D009572 8.0e-18 93.2 68 75.0
ATR0743G065 Amborella trichopoda HOM05D007605 ORTHO05D009572 1.0e-17 92.8 63 69.8
MELO3C011854.2 Cucumis melo HOM05D007605 ORTHO05D009572 1.0e-17 92.8 57 78.9
Os12g0611700 Oryza sativa ssp. japonica HOM05D007605 ORTHO05D009572 1.0e-17 92.8 60 76.7
AUR62002411 Chenopodium quinoa HOM05D007605 ORTHO05D009572 1.4e-17 92.4 57 75.4
Manes.05G136900 Manihot esculenta HOM05D007605 ORTHO05D009572 1.4e-17 92.4 55 81.8
Manes.08G010900 Manihot esculenta HOM05D007605 ORTHO05D009572 1.4e-17 92.4 55 81.8
Phvul.008G005000 Phaseolus vulgaris HOM05D007605 ORTHO05D009572 1.4e-17 92.4 64 71.9
ECA248G2718 Erigeron canadensis HOM05D007605 ORTHO05D009572 1.8e-17 92.0 52 84.6
CSS0027032 Camellia sinensis var. sinensis HOM05D007605 ORTHO05D009572 2.3e-17 91.7 57 84.2
CSS0028313 Camellia sinensis var. sinensis HOM05D007605 ORTHO05D009572 2.3e-17 91.7 57 84.2
QL10p056550 Quercus lobata HOM05D007605 ORTHO05D009572 2.3e-17 91.7 64 76.6
Atru.chr12.2308 Acer truncatum HOM05D007605 ORTHO05D009572 3.0e-17 91.3 57 77.2
Carub.0004s2631 Capsella rubella HOM05D007605 ORTHO05D009572 3.0e-17 91.3 62 75.8
PGSC0003DMG400016297 Solanum tuberosum HOM05D007605 ORTHO05D009572 3.0e-17 91.3 62 71.0
Os05g0103800 Oryza sativa ssp. japonica HOM05D007605 ORTHO05D009572 4.0e-17 90.9 60 75.0
Sed0018718 Sechium edule HOM05D007605 ORTHO05D009572 5.2e-17 90.5 59 74.6
Sopen06g018580 Solanum pennellii HOM05D007605 ORTHO05D009572 5.2e-17 90.5 64 67.2
Lsat_1_v5_gn_1_21060 Lactuca sativa HOM05D007605 ORTHO05D009572 8.9e-17 89.7 54 79.6
Ah.07g202920 Amaranthus hybridus HOM05D007605 ORTHO05D009572 1.2e-16 89.4 52 80.8
AL4G42650 Arabidopsis lyrata HOM05D007605 ORTHO05D009572 1.2e-16 89.4 62 75.8
Gohir.A10G144600 Gossypium hirsutum HOM05D007605 ORTHO05D009572 1.2e-16 89.4 58 79.3
Sp4g25850 Schrenkiella parvula HOM05D007605 ORTHO05D009572 1.2e-16 89.4 62 74.2
AT2G43780 Arabidopsis thaliana HOM05D007605 ORTHO05D009572 2.0e-16 88.6 62 74.2
Lalb_Chr04g0257371 Lupinus albus HOM05D007605 ORTHO05D009572 2.0e-16 88.6 52 82.7
EL10Ac3g06103 Beta vulgaris HOM05D007605 ORTHO05D009572 2.6e-16 88.2 62 71.0
BcaB05g23281 Brassica carinata HOM05D007605 ORTHO05D009572 5.7e-16 87.0 62 71.0
Gohir.D10G122400 Gossypium hirsutum HOM05D007605 ORTHO05D009572 5.7e-16 87.0 54 79.6
Gorai.011G134700 Gossypium raimondii HOM05D007605 ORTHO05D009572 5.7e-16 87.0 54 79.6
Aa31LG1G25490 Aethionema arabicum HOM05D005323 ORTHO05D006820 9.8e-16 86.3 52 80.8
CARHR138960 Cardamine hirsuta HOM05D007605 ORTHO05D009572 9.8e-16 86.3 62 72.6
PSO573G0041 Papaver somniferum HOM05D007605 ORTHO05D009572 1.7e-15 85.5 58 75.9
Glyma.19G073500 Glycine max HOM05D007605 ORTHO05D009572 2.2e-15 85.1 64 65.6
BcaB01g03362 Brassica carinata HOM05D007605 ORTHO05D009572 2.8e-15 84.7 53 79.2
BcaC01g05214 Brassica carinata HOM05D007605 ORTHO05D009572 2.8e-15 84.7 53 79.2
C03p29150 Brassica napus HOM05D007605 ORTHO05D009572 2.8e-15 84.7 53 79.2
BolC3t15267H Brassica oleracea HOM05D007605 ORTHO05D009572 2.8e-15 84.7 53 79.2
BcaC02g12364 Brassica carinata HOM05D005323 ORTHO05D006820 3.7e-15 84.3 53 79.2
C04p04730 Brassica napus HOM05D005323 ORTHO05D006820 3.7e-15 84.3 53 79.2
BolC4t22103H Brassica oleracea HOM05D005323 ORTHO05D006820 3.7e-15 84.3 53 79.2
Thhalv10001711m.g Eutrema salsugineum HOM05D007605 ORTHO05D009572 4.9e-15 84.0 67 71.6
BcaB02g08902 Brassica carinata HOM05D005323 ORTHO05D006820 6.3e-15 83.6 53 79.2
A03p24460 Brassica napus HOM05D007605 ORTHO05D009572 6.3e-15 83.6 53 79.2
BraA03t11655Z Brassica rapa HOM05D007605 ORTHO05D009572 6.3e-15 83.6 53 79.2
A05p03980 Brassica napus HOM05D005323 ORTHO05D006820 8.3e-15 83.2 53 77.4
BraA05t19386Z Brassica rapa HOM05D005323 ORTHO05D006820 8.3e-15 83.2 53 77.4
Glyma.19G030600 Glycine max HOM05D007605 ORTHO05D009572 1.1e-14 82.8 62 69.4
ClCG11G013540 Citrullus lanatus HOM05D007605 ORTHO05D009572 5.4e-14 80.5 50 78.0
GSVIVG01038176001 Vitis vinifera HOM05D007605 ORTHO05D009572 1.6e-13 79.0 56 69.6
CsaV3_5G030160 Cucumis sativus L. HOM05D007605 ORTHO05D009572 2.7e-13 78.2 47 80.9
Lsat_1_v5_gn_1_74540 Lactuca sativa HOM05D007605 ORTHO05D009572 4.5e-13 77.4 42 88.1
vmacro23387 Vaccinium macrocarpon HOM05D007605 ORTHO05D009572 5.9e-13 77.0 47 80.9
Lj6C218G0 Lonicera japonica HOM05D000384 ORTHO05D000468 1.7e-12 75.5 42 85.7
Glyma.17G205632 Glycine max HOM05D007605 ORTHO05D009572 9.5e-11 69.7 60 58.3
Mapoly0044s0040 Marchantia polymorpha HOM05D007605 ORTHO05D009572 4.0e-09 64.3 51 62.7
Pp3c9_12740 Physcomitrium patens HOM05D007605 ORTHO05D009572 4.4e-08 60.8 54 59.3
BcaC05g29066 Brassica carinata HOM05D007605 ORTHO05D009572 5.8e-08 60.5 40 72.5


User provided reference genes

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