Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.019G084400 Populus trichocarpa HOM05D012719 ORTHO05D011609 1.6e-163 579.3 294 100.0
Potri.013G113800 Populus trichocarpa HOM05D012719 ORTHO05D011609 1.5e-132 476.5 295 82.7
Thecc.08G181900 Theobroma cacao HOM05D011855 ORTHO05D011609 3.5e-73 279.3 297 52.9
Cfa018193 Carpinus fangiana HOM05D012719 ORTHO05D011609 2.8e-62 243.0 297 51.2
Haze_17921 Corylus avellana HOM05D004678 ORTHO05D005880 1.1e-61 241.1 303 49.2
Haze_17923 Corylus avellana HOM05D012719 ORTHO05D011609 1.7e-59 233.8 298 50.0
Nn5g27743 Nelumbo nucifera HOM05D011855 ORTHO05D011609 5.6e-55 218.8 291 42.3
AUR62004652 Chenopodium quinoa HOM05D012719 ORTHO05D011609 3.5e-49 199.5 293 36.9
AUR62023571 Chenopodium quinoa HOM05D012719 ORTHO05D011609 4.6e-49 199.1 293 37.2
COL.COLO4_19764 Corchorus olitorius HOM05D012719 ORTHO05D011609 7.9e-49 198.4 307 39.1
Sabra19G0095500 Salix brachista HOM05D012719 ORTHO05D011609 2.5e-47 193.4 134 72.4
Dinv41697 Davidia involucrata HOM05D011855 ORTHO05D011609 6.2e-46 188.7 194 51.5
Ah.05g178050 Amaranthus hybridus HOM05D012719 ORTHO05D011609 2.5e-42 176.8 290 36.2
Sc01g0001740 Simmondsia chinensis HOM05D011855 ORTHO05D011609 1.5e-36 157.5 300 33.7
HPP92_011411 Vanilla planifolia HOM05D012719 ORTHO05D011609 1.4e-34 151.0 289 33.9
Cpa.g.sc66.50 Carica papaya HOM05D011855 ORTHO05D011609 3.2e-34 149.8 301 35.9
Nitab4.5_0000560g0170 Nicotiana tabacum HOM05D011855 ORTHO05D011609 2.7e-33 146.7 296 32.4
CAN.G370.24 Capsicum annuum HOM05D011855 ORTHO05D011609 1.8e-32 144.1 299 34.1
HPP92_016119 Vanilla planifolia HOM05D012719 ORTHO05D011609 2.5e-31 140.2 298 33.9
Cc10_g11370 Coffea canephora HOM05D011855 ORTHO05D011609 6.9e-29 132.1 255 32.5
Sopen11g009360 Solanum pennellii HOM05D011855 ORTHO05D011609 1.7e-27 127.5 304 31.9
PGSC0003DMG400009225 Solanum tuberosum HOM05D011855 ORTHO05D011609 2.9e-27 126.7 299 32.1
Solyc11g017410.1 Solanum lycopersicum HOM05D011855 ORTHO05D011609 9.4e-26 121.7 304 32.2
Cfa018190 Carpinus fangiana HOM05D012719 ORTHO05D011609 2.0e-23 114.0 154 46.1
HPP92_004458 Vanilla planifolia HOM05D012719 ORTHO05D011609 5.7e-23 112.5 290 30.7
ATR0152G020 Amborella trichopoda HOM05D011855 ORTHO05D011609 1.5e-15 87.8 289 24.9
Os11g0198200 Oryza sativa ssp. japonica HOM05D065905 ORTHO05D011609 1.4e-13 81.3 331 24.8
Zm00001eb168890 Zea mays HOM05D065905 ORTHO05D011609 3.5e-12 76.6 333 24.0
Mapoly0005s0250 Marchantia polymorpha HOM05D002421 ORTHO05D002560 7.7e-12 75.5 274 26.3
SEGI_04278 Sequoiadendron giganteum HOM05D002440 ORTHO05D002576 3.8e-11 73.2 319 24.1
Psat7g062880 Pisum sativum HOM05D002421 ORTHO05D002560 5.0e-11 72.8 288 25.7
Ah.05g180270 Amaranthus hybridus HOM05D002440 ORTHO05D002576 1.1e-10 71.6 302 24.8
TAR629G1939 Trochodendron aralioides HOM05D002440 ORTHO05D002576 3.2e-10 70.1 302 24.2
Migut.N01457 Erythranthe guttata HOM05D002440 ORTHO05D002576 5.5e-10 69.3 303 25.7
Glyma.09G255800 Glycine max HOM05D002440 ORTHO05D002576 5.5e-10 69.3 299 25.8
Lalb_Chr15g0090671 Lupinus albus HOM05D002421 ORTHO05D002560 5.5e-10 69.3 296 23.6
Rhsim01G0164900 Rhododendron simsii HOM05D002440 ORTHO05D002576 5.5e-10 69.3 315 24.8
TPR.G23095 Trifolium pratense HOM05D002421 ORTHO05D002560 5.5e-10 69.3 293 23.5
TWI59G0213 Tripterygium wilfordii HOM05D002421 ORTHO05D002560 5.5e-10 69.3 300 24.3
Gorai.005G092200 Gossypium raimondii HOM05D002421 ORTHO05D002560 9.4e-10 68.6 309 23.6
Gohir.A02G075200 Gossypium hirsutum HOM05D002421 ORTHO05D002560 1.2e-09 68.2 292 22.9
Gohir.D02G082300 Gossypium hirsutum HOM05D002421 ORTHO05D002560 1.2e-09 68.2 295 23.4
Lalb_Chr20g0123561 Lupinus albus HOM05D002421 ORTHO05D002560 1.2e-09 68.2 294 24.5
Pp3c23_16590 Physcomitrium patens HOM05D002440 ORTHO05D002576 1.2e-09 68.2 304 26.3
Pp3c20_12050 Physcomitrium patens HOM05D002440 ORTHO05D002576 1.6e-09 67.8 305 25.2
vmacro20908 Vaccinium macrocarpon HOM05D002440 ORTHO05D002576 1.6e-09 67.8 294 23.5
Phvul.008G059500 Phaseolus vulgaris HOM05D002440 ORTHO05D002576 2.1e-09 67.4 306 26.5
Medtr7g078700 Medicago truncatula HOM05D002440 ORTHO05D002576 2.7e-09 67.0 296 25.0
Phvul.006G215900 Phaseolus vulgaris HOM05D002421 ORTHO05D002560 3.6e-09 66.6 291 22.0
Pp3c23_10870 Physcomitrium patens HOM05D002440 ORTHO05D002576 3.6e-09 66.6 304 23.7
MD12G1145700 Malus domestica HOM05D002421 ORTHO05D002560 4.7e-09 66.2 310 22.9
Medtr8g088750 Medicago truncatula HOM05D002421 ORTHO05D002560 4.7e-09 66.2 315 23.2
Gohir.A13G035600 Gossypium hirsutum HOM05D002421 ORTHO05D002560 6.1e-09 65.9 310 22.3
Gohir.D13G033900 Gossypium hirsutum HOM05D002421 ORTHO05D002560 6.1e-09 65.9 310 22.3
Gorai.013G038300 Gossypium raimondii HOM05D002421 ORTHO05D002560 6.1e-09 65.9 310 22.3
Lj1g0003145 Lotus japonicus HOM05D002421 ORTHO05D002560 6.1e-09 65.9 307 23.1
SGA_v2.0_scaffold95G28820 Striga asiatica HOM05D000137 ORTHO05D002576 6.1e-09 65.9 301 24.6
Ah.15g095810 Amaranthus hybridus HOM05D002440 ORTHO05D002576 8.0e-09 65.5 302 24.8
Sed0004286 Sechium edule HOM05D002421 ORTHO05D002560 8.0e-09 65.5 308 22.1
Glyma.12G170400 Glycine max HOM05D002421 ORTHO05D002560 1.0e-08 65.1 289 22.1
MBI19_g41373_MAGBIO Magnolia biondii HOM05D002440 ORTHO05D002576 1.0e-08 65.1 297 23.6
MD04G1133000 Malus domestica HOM05D002421 ORTHO05D002560 1.0e-08 65.1 298 22.5
Psat1g222000 Pisum sativum HOM05D002421 ORTHO05D002560 1.0e-08 65.1 304 23.0
SEGI_08203 Sequoiadendron giganteum HOM05D002440 ORTHO05D002576 1.0e-08 65.1 320 24.1
Dinv43850 Davidia involucrata HOM05D002440 ORTHO05D002576 1.4e-08 64.7 301 23.6
Lj9P587T61 Lonicera japonica HOM05D002440 ORTHO05D002576 1.4e-08 64.7 305 23.0
Rhsim07G0011700 Rhododendron simsii HOM05D002440 ORTHO05D002576 1.4e-08 64.7 308 25.3
TWI23G0611 Tripterygium wilfordii HOM05D002421 ORTHO05D002560 1.4e-08 64.7 302 23.2
Medtr3g073480 Medicago truncatula HOM05D002421 ORTHO05D002560 1.8e-08 64.3 311 21.2
Nitab4.5_0000816g0120 Nicotiana tabacum HOM05D002421 ORTHO05D002560 1.8e-08 64.3 298 23.2
Oeu054334.1 Olea europaea HOM05D002440 ORTHO05D002576 1.8e-08 64.3 307 25.4
Thecc.02G088800 Theobroma cacao HOM05D002421 ORTHO05D002560 1.8e-08 64.3 325 24.0
Medtr5g060880 Medicago truncatula HOM05D002421 ORTHO05D002560 2.3e-08 63.9 311 23.5
AagrBONN_evm.TU.Sc2ySwM_344.2059 Anthoceros agrestis HOM05D002421 ORTHO05D002560 3.0e-08 63.5 304 23.4
Dinv32508 Davidia involucrata HOM05D002440 ORTHO05D002576 3.0e-08 63.5 302 23.8
Glyma.18G237000 Glycine max HOM05D002440 ORTHO05D002576 3.0e-08 63.5 299 25.1
Duzib052G0194 Durio zibethinus HOM05D002421 ORTHO05D002560 4.0e-08 63.2 293 22.5
Solyc01g104010.2 Solanum lycopersicum HOM05D002421 ORTHO05D002560 4.0e-08 63.2 296 23.0
Sopen01g046410 Solanum pennellii HOM05D002421 ORTHO05D002560 4.0e-08 63.2 296 23.0
Cc00_g04220 Coffea canephora HOM05D002421 ORTHO05D002560 5.2e-08 62.8 315 22.2
Haze_15547 Corylus avellana HOM05D002440 ORTHO05D002576 5.2e-08 62.8 314 22.3
Gohir.D06G041100 Gossypium hirsutum HOM05D002421 ORTHO05D002560 5.2e-08 62.8 286 22.0
Lj7A306T34 Lonicera japonica HOM05D002421 ORTHO05D002560 5.2e-08 62.8 290 23.4
Lj6g0006413 Lotus japonicus HOM05D002421 ORTHO05D002560 5.2e-08 62.8 291 23.4
Oeu015225.1 Olea europaea HOM05D002440 ORTHO05D002576 5.2e-08 62.8 302 23.8
DCAR_025346 Daucus carota HOM05D002421 ORTHO05D002560 6.7e-08 62.4 306 22.5
Medtr2g006850 Medicago truncatula HOM05D002421 ORTHO05D002560 6.7e-08 62.4 303 22.1
Phvul.008G059600 Phaseolus vulgaris HOM05D002440 ORTHO05D002576 6.7e-08 62.4 303 26.4
Gorai.010G045900 Gossypium raimondii HOM05D002421 ORTHO05D002560 8.8e-08 62.0 286 22.0
Lj9A304T85 Lonicera japonica HOM05D002421 ORTHO05D002560 8.8e-08 62.0 309 22.0
Nitab4.5_0001744g0060 Nicotiana tabacum HOM05D002421 ORTHO05D002560 8.8e-08 62.0 298 23.2
TPR.G2145 Trifolium pratense HOM05D002421 ORTHO05D002560 8.8e-08 62.0 304 24.3
CSS0035560 Camellia sinensis var. sinensis HOM05D002440 ORTHO05D002576 1.2e-07 61.6 302 23.5
Duzib132G1252 Durio zibethinus HOM05D002421 ORTHO05D002560 1.2e-07 61.6 310 23.2
Gohir.A06G040100 Gossypium hirsutum HOM05D002421 ORTHO05D002560 1.2e-07 61.6 286 21.7
Pp3c9_13730 Physcomitrium patens HOM05D002440 ORTHO05D002576 1.2e-07 61.6 299 25.4
SalBow3G0361 Salvia bowleyana HOM05D002440 ORTHO05D002576 1.2e-07 61.6 291 25.1
PGSC0003DMG400023770 Solanum tuberosum HOM05D002421 ORTHO05D002560 1.2e-07 61.6 295 21.7
VMungo0251G2838 Vigna mungo HOM05D002421 ORTHO05D002560 1.2e-07 61.6 292 23.3
Aqoxy5G02457 Aquilegia oxysepala HOM05D002421 ORTHO05D002560 2.0e-07 60.8 313 24.6
Aqoxy7G00236 Aquilegia oxysepala HOM05D002440 ORTHO05D002576 2.0e-07 60.8 306 22.2
CiPaw.02G033700 Carya illinoinensis HOM05D002440 ORTHO05D002576 2.0e-07 60.8 312 24.7
Ca_00821_v3 Cicer arietinum L. HOM05D002440 ORTHO05D002576 2.0e-07 60.8 302 24.2
DCAR_004028 Daucus carota HOM05D002421 ORTHO05D002560 2.0e-07 60.8 311 21.5
Os10g0513300 Oryza sativa ssp. japonica HOM05D002440 ORTHO05D002576 2.0e-07 60.8 134 26.9
Cc00_g17880 Coffea canephora HOM05D002440 ORTHO05D002576 2.6e-07 60.5 301 23.9
Prupe.1G507700 Prunus persica HOM05D002421 ORTHO05D002560 2.6e-07 60.5 306 23.2
MSTRG.4845 Avicennia marina HOM05D002440 ORTHO05D002576 3.3e-07 60.1 300 23.0
ClCG05G009550 Citrullus lanatus HOM05D002421 ORTHO05D002560 3.3e-07 60.1 309 23.0
Dinv24298 Davidia involucrata HOM05D002421 ORTHO05D002560 3.3e-07 60.1 290 23.4
Lj1g0008716 Lotus japonicus HOM05D002440 ORTHO05D002576 3.3e-07 60.1 285 23.2
Psat3g108800 Pisum sativum HOM05D002440 ORTHO05D002576 3.3e-07 60.1 302 24.5
vmacro01751 Vaccinium macrocarpon HOM05D002421 ORTHO05D002560 3.3e-07 60.1 303 22.1
arahy.Tifrunner.gnm1.ann1.QVR4YF Arachis hypogaea HOM05D002421 ORTHO05D002560 4.4e-07 59.7 285 20.4
Duzib093G2137 Durio zibethinus HOM05D002421 ORTHO05D002560 4.4e-07 59.7 295 22.0
Peaxi162Scf00020g00113 Petunia axillaris HOM05D002440 ORTHO05D002576 4.4e-07 59.7 301 22.9
QL04p054979 Quercus lobata HOM05D002440 ORTHO05D002576 4.4e-07 59.7 301 23.3
TAR381G1288 Trochodendron aralioides HOM05D002421 ORTHO05D002560 4.4e-07 59.7 321 23.7
VMungo1383G0515 Vigna mungo HOM05D002440 ORTHO05D002576 4.4e-07 59.7 302 24.8
CSS0010107 Camellia sinensis var. sinensis HOM05D002421 ORTHO05D002560 5.7e-07 59.3 306 20.6
Manes.10G122100 Manihot esculenta HOM05D002421 ORTHO05D002560 5.7e-07 59.3 291 22.3
Nn5g27932 Nelumbo nucifera HOM05D002421 ORTHO05D002560 5.7e-07 59.3 310 22.9
Sabra01G0163700 Salix brachista HOM05D002421 ORTHO05D002560 5.7e-07 59.3 322 22.4
TAR628G0220 Trochodendron aralioides HOM05D002421 ORTHO05D002560 5.7e-07 59.3 309 22.3
CAN.G798.17 Capsicum annuum HOM05D002421 ORTHO05D002560 7.5e-07 58.9 296 22.6
MD08G1173600 Malus domestica HOM05D002421 ORTHO05D002560 7.5e-07 58.9 310 21.6
Phvul.002G249400 Phaseolus vulgaris HOM05D002421 ORTHO05D002560 7.5e-07 58.9 284 23.6
PGSC0003DMG400006547 Solanum tuberosum HOM05D002421 ORTHO05D002560 7.5e-07 58.9 292 21.6
CAN.G1530.2 Capsicum annuum HOM05D011855 ORTHO05D011609 9.7e-07 58.5 119 31.1
Ciclev10001863m.g Citrus clementina HOM05D002421 ORTHO05D002560 9.7e-07 58.5 296 22.0
CsaV3_3G019170 Cucumis sativus L. HOM05D002421 ORTHO05D002560 9.7e-07 58.5 313 22.7
Nn1g08511 Nelumbo nucifera HOM05D002421 ORTHO05D002560 9.7e-07 58.5 306 21.2
Oeu018967.1 Olea europaea HOM05D002440 ORTHO05D002576 9.7e-07 58.5 301 24.9
Peaxi162Scf00152g00144 Petunia axillaris HOM05D002421 ORTHO05D002560 9.7e-07 58.5 303 23.8
Potri.003G018700 Populus trichocarpa HOM05D002421 ORTHO05D002560 9.7e-07 58.5 320 21.9
TPR.G32958 Trifolium pratense HOM05D002421 ORTHO05D002560 9.7e-07 58.5 311 19.9
TAR293G0004 Trochodendron aralioides HOM05D002421 ORTHO05D002560 9.7e-07 58.5 315 23.8
arahy.Tifrunner.gnm1.ann1.ZTTB8N Arachis hypogaea HOM05D002440 ORTHO05D002576 1.3e-06 58.2 298 24.8
CSS0007134 Camellia sinensis var. sinensis HOM05D002421 ORTHO05D002560 1.3e-06 58.2 291 24.4
CSS0042224 Camellia sinensis var. sinensis HOM05D002440 ORTHO05D002576 1.3e-06 58.2 303 23.4
AUR62004681 Chenopodium quinoa HOM05D002421 ORTHO05D002560 1.3e-06 58.2 302 22.2
AUR62023599 Chenopodium quinoa HOM05D002421 ORTHO05D002560 1.3e-06 58.2 302 22.2
MELO3C019452.2 Cucumis melo HOM05D002421 ORTHO05D002560 1.3e-06 58.2 324 22.5
ECA240G4074 Erigeron canadensis HOM05D002421 ORTHO05D002560 1.3e-06 58.2 288 19.4
Glyma.08G127100 Glycine max HOM05D002421 ORTHO05D002560 1.3e-06 58.2 293 23.2
PGR044G1846 Punica granatum HOM05D002421 ORTHO05D002560 1.3e-06 58.2 326 24.8
arahy.Tifrunner.gnm1.ann1.95QHYM Arachis hypogaea HOM05D002421 ORTHO05D002560 1.7e-06 57.8 285 20.0
arahy.Tifrunner.gnm1.ann1.QF5GL7 Arachis hypogaea HOM05D002421 ORTHO05D002560 1.7e-06 57.8 310 21.6
Gohir.A05G230900 Gossypium hirsutum HOM05D002421 ORTHO05D002560 1.7e-06 57.8 292 21.6
Lsat_1_v5_gn_9_121101 Lactuca sativa HOM05D002421 ORTHO05D002560 1.7e-06 57.8 297 21.2
Manes.05G031100 Manihot esculenta HOM05D002440 ORTHO05D002576 1.7e-06 57.8 307 22.1
Potri.001G211900 Populus trichocarpa HOM05D002421 ORTHO05D002560 1.7e-06 57.8 323 22.6
Hund16666 Selenicereus undatus HOM05D002440 ORTHO05D002576 1.7e-06 57.8 304 22.4
Hund27066 Selenicereus undatus HOM05D002421 ORTHO05D002560 1.7e-06 57.8 71 39.4
CSS0045894 Camellia sinensis var. sinensis HOM05D002421 ORTHO05D002560 2.2e-06 57.4 301 22.3
FAN04G0083 Fragaria x ananassa HOM05D002421 ORTHO05D002560 2.2e-06 57.4 307 22.8
Gohir.D05G233400 Gossypium hirsutum HOM05D002421 ORTHO05D002560 2.2e-06 57.4 292 21.6
Gorai.009G241500 Gossypium raimondii HOM05D002421 ORTHO05D002560 2.2e-06 57.4 292 21.6
Ah.05g172760 Amaranthus hybridus HOM05D002421 ORTHO05D002560 2.8e-06 57.0 298 22.5
ClCG08G010880 Citrullus lanatus HOM05D002421 ORTHO05D002560 2.8e-06 57.0 296 20.6
Lalb_Chr17g0339161 Lupinus albus HOM05D002440 ORTHO05D002576 2.8e-06 57.0 252 24.2
Psat0s2104g0160 Pisum sativum HOM05D002421 ORTHO05D002560 2.8e-06 57.0 313 22.7
FvH4_5g38440 Fragaria vesca HOM05D002421 ORTHO05D002560 3.7e-06 56.6 307 22.8
FAN08G2760 Fragaria x ananassa HOM05D002421 ORTHO05D002560 3.7e-06 56.6 307 22.8
unitig_0.g912 Utricularia gibba HOM05D002421 ORTHO05D002560 3.7e-06 56.6 306 22.2
CSS0006184 Camellia sinensis var. sinensis HOM05D002440 ORTHO05D002576 4.8e-06 56.2 301 23.6
Ca_23593_v3 Cicer arietinum L. HOM05D002440 ORTHO05D002576 4.8e-06 56.2 282 24.5
MD13G1008300 Malus domestica HOM05D002440 ORTHO05D002576 4.8e-06 56.2 305 23.3
PSO782G0131 Papaver somniferum HOM05D002440 ORTHO05D002576 4.8e-06 56.2 301 23.9
Peaxi162Scf00585g00110 Petunia axillaris HOM05D002440 ORTHO05D002576 4.8e-06 56.2 301 22.9
PGR042G2169 Punica granatum HOM05D002421 ORTHO05D002560 4.8e-06 56.2 295 21.4
Actinidia10051 Actinidia chinensis HOM05D002440 ORTHO05D002576 6.3e-06 55.8 302 24.8
FAN13G0570 Fragaria x ananassa HOM05D002421 ORTHO05D002560 6.3e-06 55.8 307 22.8
Glyma.06G107700 Glycine max HOM05D002421 ORTHO05D002560 6.3e-06 55.8 86 38.4
Hma1.2p1_1197F.1_g266120 Hydrangea macrophylla HOM05D002421 ORTHO05D002560 6.3e-06 55.8 307 21.8
Oeu000110.1 Olea europaea HOM05D002421 ORTHO05D002560 6.3e-06 55.8 319 21.0
Sabra03G0010200 Salix brachista HOM05D002421 ORTHO05D002560 6.3e-06 55.8 304 22.0
SEGI_01544 Sequoiadendron giganteum HOM05D002421 ORTHO05D002560 6.3e-06 55.8 91 28.6
SEGI_40655 Sequoiadendron giganteum HOM05D002421 ORTHO05D002560 6.3e-06 55.8 91 28.6
Glyma.08G187700 Glycine max HOM05D002421 ORTHO05D002560 8.2e-06 55.5 313 22.0
HanXRQChr10g0298101 Helianthus annuus HOM05D002421 ORTHO05D002560 8.2e-06 55.5 70 37.1
PSO478G1852 Papaver somniferum HOM05D002440 ORTHO05D002576 8.2e-06 55.5 301 23.9
Sabra02G0071100 Salix brachista HOM05D002421 ORTHO05D002560 8.2e-06 55.5 309 21.4
Hund16814 Selenicereus undatus HOM05D002421 ORTHO05D002560 8.2e-06 55.5 71 39.4
GSVIVG01022844001 Vitis vinifera HOM05D002421 ORTHO05D002560 8.2e-06 55.5 312 22.8


User provided reference genes

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