Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.019G081700 Populus trichocarpa HOM05D004752 ORTHO05D005523 3.2e-47 191.4 97 100.0
Potri.013G110600 Populus trichocarpa HOM05D004752 ORTHO05D005523 2.1e-43 178.7 99 92.9
Dinv41721 Davidia involucrata HOM05D004752 ORTHO05D005523 1.2e-38 162.9 100 84.0
Lj6g0009552 Lotus japonicus HOM05D004752 ORTHO05D005523 2.1e-38 162.2 97 81.4
Atru.chr13.2410 Acer truncatum HOM05D004752 ORTHO05D005523 1.0e-37 159.8 97 82.5
Manes.02G194400 Manihot esculenta HOM05D004752 ORTHO05D005523 1.0e-37 159.8 97 82.5
PGR042G3757 Punica granatum HOM05D004752 ORTHO05D005523 1.7e-37 159.1 100 83.0
Manes.18G103200 Manihot esculenta HOM05D004752 ORTHO05D005523 2.3e-37 158.7 99 80.8
COL.COLO4_34528 Corchorus olitorius HOM05D004752 ORTHO05D005523 3.0e-37 158.3 100 81.0
Medtr1g048960 Medicago truncatula HOM05D004752 ORTHO05D005523 3.0e-37 158.3 97 80.4
Thecc.08G186100 Theobroma cacao HOM05D004752 ORTHO05D005523 3.9e-37 157.9 100 82.0
Duzib211G0386 Durio zibethinus HOM05D004752 ORTHO05D005523 5.1e-37 157.5 100 81.0
Lalb_Chr19g0129031 Lupinus albus HOM05D004752 ORTHO05D005523 1.1e-36 156.4 97 81.4
TPR.G20783 Trifolium pratense HOM05D004752 ORTHO05D005523 1.1e-36 156.4 97 79.4
TAR628G0740 Trochodendron aralioides HOM05D004752 ORTHO05D005523 1.5e-36 156.0 97 81.4
Gohir.D05G251900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 2.5e-36 155.2 98 81.6
Gorai.009G263300 Gossypium raimondii HOM05D004752 ORTHO05D005523 2.5e-36 155.2 98 81.6
Duzib177G0553 Durio zibethinus HOM05D004752 ORTHO05D005523 3.3e-36 154.8 100 81.0
Glyma.10G117300 Glycine max HOM05D004752 ORTHO05D005523 3.3e-36 154.8 97 78.4
CSS0011118 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 4.3e-36 154.5 100 81.0
CSS0018537 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 4.3e-36 154.5 100 81.0
Gohir.A05G250100 Gossypium hirsutum HOM05D004752 ORTHO05D005523 4.3e-36 154.5 98 80.6
Gorai.009G263400 Gossypium raimondii HOM05D004752 ORTHO05D005523 4.3e-36 154.5 98 80.6
Glyma.20G068500 Glycine max HOM05D004752 ORTHO05D005523 5.6e-36 154.1 97 77.3
Lalb_Chr03g0036521 Lupinus albus HOM05D004752 ORTHO05D005523 5.6e-36 154.1 97 80.4
Nitab4.5_0000303g0280 Nicotiana tabacum HOM05D004752 ORTHO05D005523 5.6e-36 154.1 98 76.5
Nitab4.5_0001082g0040 Nicotiana tabacum HOM05D004752 ORTHO05D005523 5.6e-36 154.1 98 76.5
Peaxi162Scf00268g00615 Petunia axillaris HOM05D004752 ORTHO05D005523 7.3e-36 153.7 98 78.6
Cc00_g06570 Coffea canephora HOM05D004752 ORTHO05D005523 1.3e-35 152.9 100 80.0
Gohir.D05G253600 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.6e-35 152.5 97 80.4
Gohir.A05G250200 Gossypium hirsutum HOM05D004752 ORTHO05D005523 2.1e-35 152.1 98 79.6
TAR381G0821 Trochodendron aralioides HOM05D004752 ORTHO05D005523 2.8e-35 151.8 97 79.4
Hund27095 Selenicereus undatus HOM05D004752 ORTHO05D005523 3.6e-35 151.4 98 76.5
C06p35220 Brassica napus HOM05D004752 ORTHO05D005523 4.8e-35 151.0 97 74.2
Ciclev10002954m.g Citrus clementina HOM05D004752 ORTHO05D005523 4.8e-35 151.0 97 78.4
TWI14G1278 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 4.8e-35 151.0 99 79.8
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 8.1e-35 150.2 97 72.2
BcaC08g46647 Brassica carinata HOM05D004752 ORTHO05D005523 8.1e-35 150.2 97 74.2
BcaC08g46651 Brassica carinata HOM05D004752 ORTHO05D005523 8.1e-35 150.2 97 74.2
BcaC08g46652 Brassica carinata HOM05D004752 ORTHO05D005523 8.1e-35 150.2 97 74.2
Migut.C01286 Erythranthe guttata HOM05D004752 ORTHO05D005523 8.1e-35 150.2 98 79.6
Gohir.D09G112900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 8.1e-35 150.2 100 75.0
Lj5g0024701 Lotus japonicus HOM05D004752 ORTHO05D005523 1.1e-34 149.8 99 76.8
Sabra19G0093300 Salix brachista HOM05D004752 ORTHO05D005523 1.1e-34 149.8 156 57.7
THA.LOC104809736 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 1.1e-34 149.8 97 75.3
BcaB03g14924 Brassica carinata HOM05D004752 ORTHO05D005523 1.4e-34 149.4 97 73.2
BcaC08g46649 Brassica carinata HOM05D004752 ORTHO05D005523 1.4e-34 149.4 97 73.2
Phvul.007G240400 Phaseolus vulgaris HOM05D004752 ORTHO05D005523 1.4e-34 149.4 97 78.4
TWI59G0745 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 1.4e-34 149.4 99 78.8
Aa31LG4G8590 Aethionema arabicum HOM05D004752 ORTHO05D005523 1.8e-34 149.1 97 74.2
C06p46120 Brassica napus HOM05D004752 ORTHO05D005523 1.8e-34 149.1 97 73.2
BolC6t39665H Brassica oleracea HOM05D004752 ORTHO05D005523 1.8e-34 149.1 97 73.2
BcaC03g15326 Brassica carinata HOM05D004752 ORTHO05D005523 2.4e-34 148.7 97 73.2
A02p17630 Brassica napus HOM05D004752 ORTHO05D005523 2.4e-34 148.7 97 73.2
C02p29310 Brassica napus HOM05D004752 ORTHO05D005523 2.4e-34 148.7 97 73.2
BolC2t08982H Brassica oleracea HOM05D004752 ORTHO05D005523 2.4e-34 148.7 97 73.2
BolC6t38628H Brassica oleracea HOM05D004752 ORTHO05D005523 2.4e-34 148.7 97 73.2
BraA02t06809Z Brassica rapa HOM05D004752 ORTHO05D005523 2.4e-34 148.7 97 73.2
BraA07t31385Z Brassica rapa HOM05D004752 ORTHO05D005523 2.4e-34 148.7 97 73.2
Sc23g0001310 Simmondsia chinensis HOM05D004752 ORTHO05D005523 2.4e-34 148.7 98 76.5
BcaB05g24700 Brassica carinata HOM05D004752 ORTHO05D005523 3.1e-34 148.3 97 73.2
CARHR064830 Cardamine hirsuta HOM05D004752 ORTHO05D005523 3.1e-34 148.3 97 74.2
Thhalv10019369m.g Eutrema salsugineum HOM05D004752 ORTHO05D005523 3.1e-34 148.3 97 73.2
Sp5g27090 Schrenkiella parvula HOM05D004752 ORTHO05D005523 3.1e-34 148.3 97 72.2
CsaV3_2G033590 Cucumis sativus L. HOM05D004752 ORTHO05D005523 4.0e-34 147.9 98 75.5
Gohir.D09G112701 Gossypium hirsutum HOM05D004752 ORTHO05D005523 5.3e-34 147.5 98 74.5
ClCG09G009960 Citrullus lanatus HOM05D004752 ORTHO05D005523 6.9e-34 147.1 98 76.5
Gorai.006G130300 Gossypium raimondii HOM05D004752 ORTHO05D005523 9.0e-34 146.7 101 75.2
Lalb_Chr01g0010501 Lupinus albus HOM05D004752 ORTHO05D005523 9.0e-34 146.7 97 77.3
QL12p035384 Quercus lobata HOM05D004752 ORTHO05D005523 9.0e-34 146.7 96 72.9
THA.LOC104816385 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 9.0e-34 146.7 98 76.5
A07p38200 Brassica napus HOM05D004752 ORTHO05D005523 1.2e-33 146.4 97 72.2
PGR102G0675 Punica granatum HOM05D004752 ORTHO05D005523 1.2e-33 146.4 101 74.3
PGSC0003DMG400026069 Solanum tuberosum HOM05D004752 ORTHO05D005523 1.5e-33 146.0 98 76.5
BcaC08g45743 Brassica carinata HOM05D004752 ORTHO05D005523 2.0e-33 145.6 97 71.1
MELO3C008132.2 Cucumis melo HOM05D004752 ORTHO05D005523 2.0e-33 145.6 98 74.5
Nn5g27610 Nelumbo nucifera HOM05D004752 ORTHO05D005523 2.0e-33 145.6 99 76.8
PSO170G1458 Papaver somniferum HOM05D004752 ORTHO05D005523 2.0e-33 145.6 98 75.5
Actinidia29420 Actinidia chinensis HOM05D004752 ORTHO05D005523 2.6e-33 145.2 100 77.0
Carub.0002s1880 Capsella rubella HOM05D004752 ORTHO05D005523 2.6e-33 145.2 97 71.1
Ca_21523_v3 Cicer arietinum L. HOM05D004752 ORTHO05D005523 2.6e-33 145.2 97 75.3
DCAR_011527 Daucus carota HOM05D004752 ORTHO05D005523 2.6e-33 145.2 98 76.5
CiPaw.06G024200 Carya illinoinensis HOM05D004752 ORTHO05D005523 3.4e-33 144.8 97 73.2
PSO782G1292 Papaver somniferum HOM05D004752 ORTHO05D005523 3.4e-33 144.8 98 75.5
A07p30460 Brassica napus HOM05D004752 ORTHO05D005523 4.5e-33 144.4 98 72.4
vmacro00760 Vaccinium macrocarpon HOM05D004752 ORTHO05D005523 5.8e-33 144.1 100 76.0
CiPaw.05G229600 Carya illinoinensis HOM05D004752 ORTHO05D005523 9.9e-33 143.3 97 73.2
FvH4_5g38800 Fragaria vesca HOM05D004752 ORTHO05D005523 9.9e-33 143.3 97 72.2
FAN18G0635 Fragaria x ananassa HOM05D004752 ORTHO05D005523 9.9e-33 143.3 97 72.2
Nitab4.5_0000365g0250 Nicotiana tabacum HOM05D004752 ORTHO05D005523 9.9e-33 143.3 89 76.4
BcaB03g15640 Brassica carinata HOM05D004752 ORTHO05D005523 1.7e-32 142.5 98 71.4
BraA07t30682Z Brassica rapa HOM05D004752 ORTHO05D005523 2.2e-32 142.1 98 71.4
RcHm_v2.0_Chr7g0240801 Rosa chinensis HOM05D004752 ORTHO05D005523 2.2e-32 142.1 97 71.1
FAN04G0063 Fragaria x ananassa HOM05D004752 ORTHO05D005523 2.9e-32 141.7 97 71.1
Rhsim06G0089000 Rhododendron simsii HOM05D004752 ORTHO05D005523 2.9e-32 141.7 100 74.0
Rhsim11G0057800 Rhododendron simsii HOM05D004752 ORTHO05D005523 2.9e-32 141.7 100 74.0
Sed0006132 Sechium edule HOM05D004752 ORTHO05D005523 2.9e-32 141.7 98 72.4
FAN08G2110 Fragaria x ananassa HOM05D004752 ORTHO05D005523 3.8e-32 141.4 97 71.1
FAN13G0652 Fragaria x ananassa HOM05D004752 ORTHO05D005523 3.8e-32 141.4 97 71.1
Prupe.1G506700 Prunus persica HOM05D004752 ORTHO05D005523 3.8e-32 141.4 97 73.2
CANSAT80G1056 Cannabis sativa HOM05D004752 ORTHO05D005523 6.4e-32 140.6 102 74.5
SalBow6G5456 Salvia bowleyana HOM05D004752 ORTHO05D005523 8.4e-32 140.2 98 71.4
SalBow6G7070 Salvia bowleyana HOM05D004752 ORTHO05D005523 8.4e-32 140.2 98 71.4
AUR62022705 Chenopodium quinoa HOM05D004752 ORTHO05D005523 1.4e-31 139.4 96 75.0
ECA247G0381 Erigeron canadensis HOM05D004752 ORTHO05D005523 1.4e-31 139.4 97 77.3
MSTRG.1541 Avicennia marina HOM05D004752 ORTHO05D005523 2.4e-31 138.7 98 71.4
Eucgr.F02586 Eucalyptus grandis HOM05D004752 ORTHO05D005523 3.2e-31 138.3 104 72.1
HanXRQChr04g0109661 Helianthus annuus HOM05D004752 ORTHO05D005523 4.2e-31 137.9 98 74.5
EL10Ac1g00098 Beta vulgaris HOM05D004752 ORTHO05D005523 5.4e-31 137.5 98 72.4
Peaxi162Scf00391g00436 Petunia axillaris HOM05D004752 ORTHO05D005523 5.4e-31 137.5 89 75.3
Sc01g0001860 Simmondsia chinensis HOM05D004752 ORTHO05D005523 5.4e-31 137.5 97 69.1
Aqoxy5G02666 Aquilegia oxysepala HOM05D004752 ORTHO05D005523 2.1e-30 135.6 103 71.8
Nitab4.5_0003010g0020 Nicotiana tabacum HOM05D004752 ORTHO05D005523 2.1e-30 135.6 89 75.3
SalBow6G5891 Salvia bowleyana HOM05D004752 ORTHO05D005523 2.1e-30 135.6 94 72.3
VMungo0720G2181 Vigna mungo HOM05D004752 ORTHO05D005523 2.1e-30 135.6 121 59.5
arahy.Tifrunner.gnm1.ann1.0CG85F Arachis hypogaea HOM05D004752 ORTHO05D005523 3.5e-30 134.8 99 70.7
arahy.Tifrunner.gnm1.ann1.S21HCY Arachis hypogaea HOM05D004752 ORTHO05D005523 3.5e-30 134.8 99 70.7
Duzib177G0197 Durio zibethinus HOM05D004752 ORTHO05D005523 3.5e-30 134.8 100 72.0
Lsat_1_v5_gn_1_12481 Lactuca sativa HOM05D004752 ORTHO05D005523 6.0e-30 134.0 98 74.5
Solyc06g065180.3 Solanum lycopersicum HOM05D004752 ORTHO05D005523 1.8e-29 132.5 97 70.1
Sopen06g023680 Solanum pennellii HOM05D004752 ORTHO05D005523 1.8e-29 132.5 97 70.1
AL2G31650 Arabidopsis lyrata HOM05D004752 ORTHO05D005523 2.3e-29 132.1 98 68.4
PGSC0003DMG400009277 Solanum tuberosum HOM05D004752 ORTHO05D005523 3.9e-29 131.3 92 72.8
AUR62004632 Chenopodium quinoa HOM05D004752 ORTHO05D005523 5.1e-29 131.0 108 65.7
GSVIVG01012767001 Vitis vinifera HOM05D004752 ORTHO05D005523 6.7e-29 130.6 107 64.5
Actinidia03509 Actinidia chinensis HOM05D004752 ORTHO05D005523 1.1e-28 129.8 100 71.0
CDE07G1886 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 1.1e-28 129.8 97 67.0
AT1G72020 Arabidopsis thaliana HOM05D004752 ORTHO05D005523 1.5e-28 129.4 98 66.3
SalBow6G0286 Salvia bowleyana HOM05D004752 ORTHO05D005523 1.5e-28 129.4 74 79.7
CDE04G0573 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 1.9e-28 129.0 97 67.0
MD00G1104100 Malus domestica HOM05D004752 ORTHO05D005523 3.3e-28 128.3 95 68.4
MSTRG.25459 Avicennia marina HOM05D004752 ORTHO05D005523 1.3e-27 126.3 99 66.7
Lj4E474T0 Lonicera japonica HOM05D004752 ORTHO05D005523 1.6e-27 125.9 104 69.2
Rhsim11G0056800 Rhododendron simsii HOM05D004752 ORTHO05D005523 2.4e-26 122.1 124 58.1
Os04g0432600 Oryza sativa ssp. japonica HOM05D004752 ORTHO05D005523 6.9e-26 120.6 96 65.6
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 6.9e-26 120.6 78 74.4
unitig_0.g2130 Utricularia gibba HOM05D004752 ORTHO05D005523 6.9e-26 120.6 97 62.9
MBI17_g21481_MAGBIO Magnolia biondii HOM05D004752 ORTHO05D005523 9.0e-26 120.2 78 75.6
FAN02G3062 Fragaria x ananassa HOM05D004752 ORTHO05D005523 2.0e-25 119.0 74 77.0
MD15G1358900 Malus domestica HOM05D004752 ORTHO05D005523 2.6e-25 118.6 97 62.9
ATR0071G025 Amborella trichopoda HOM05D004752 ORTHO05D005523 9.9e-25 116.7 74 74.3
FAN18G0607 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.7e-24 115.9 74 75.7
FAN18G1874 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.7e-24 115.9 74 75.7
FAN18G2073 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.7e-24 115.9 74 75.7
Zm00001eb082670 Zea mays HOM05D004752 ORTHO05D005523 3.8e-24 114.8 95 63.2
unitig_747.g21474 Utricularia gibba HOM05D004752 ORTHO05D005523 3.5e-22 108.2 82 67.1
Zm00001eb243470 Zea mays HOM05D004752 ORTHO05D005523 1.8e-21 105.9 96 55.2
Gohir.A09G115700 Gossypium hirsutum HOM05D004752 ORTHO05D005523 3.0e-21 105.1 60 81.7
HPP92_000079 Vanilla planifolia HOM05D004752 ORTHO05D005523 6.7e-21 104.0 61 77.0
SEGI_26065 Sequoiadendron giganteum HOM05D004752 ORTHO05D005523 3.3e-20 101.7 81 59.3
SHI09031 Sapria himalayana HOM05D004752 ORTHO05D005523 2.8e-19 98.6 61 72.1
AagrBONN_evm.TU.Sc2ySwM_117.1418 Anthoceros agrestis HOM05D004752 ORTHO05D005523 2.5e-12 75.5 91 42.9
Pp3c19_1780 Physcomitrium patens HOM05D004752 ORTHO05D005523 9.0e-10 67.0 89 41.6
Psat2g095760 Pisum sativum HOM05D000552 ORTHO05D005523 5.9e-09 64.3 52 57.7
CBR_g3658 Chara braunii HOM05D004752 ORTHO05D005523 1.3e-08 63.2 62 51.6


User provided reference genes

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