Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.019G081600 Populus trichocarpa HOM05D003880 ORTHO05D004959 0.0e+00 1130.9 570 100.0
Sabra19G0093200 Salix brachista HOM05D003880 ORTHO05D004959 7.8e-312 1073.2 572 95.6
Potri.013G109400 Populus trichocarpa HOM05D003880 ORTHO05D004959 1.1e-280 969.5 572 87.2
Sabra13G0094300 Salix brachista HOM05D003880 ORTHO05D004959 1.1e-277 959.5 569 87.0
Manes.02G194600 Manihot esculenta HOM05D003880 ORTHO05D004959 5.1e-238 827.8 593 74.0
Manes.18G103500 Manihot esculenta HOM05D003880 ORTHO05D004959 3.4e-234 815.1 589 74.5
TWI59G0907 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 5.3e-219 764.6 595 68.9
TWI14G0176 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 1.1e-216 756.9 594 67.8
Dinv02585 Davidia involucrata HOM05D003880 ORTHO05D004959 8.3e-212 740.7 614 65.5
Nn5g27605 Nelumbo nucifera HOM05D003880 ORTHO05D004959 4.2e-208 728.4 604 65.6
TAR628G0517 Trochodendron aralioides HOM05D003880 ORTHO05D004959 4.2e-208 728.4 598 66.6
Gorai.006G130000 Gossypium raimondii HOM05D003880 ORTHO05D004959 1.2e-207 726.9 587 67.3
Thecc.08G186500 Theobroma cacao HOM05D003880 ORTHO05D004959 3.6e-207 725.3 592 67.6
Duzib177G0936 Durio zibethinus HOM05D003880 ORTHO05D004959 1.2e-205 720.3 516 72.7
Cpa.g.sc66.21 Carica papaya HOM05D003880 ORTHO05D004959 2.6e-205 719.2 539 70.3
Atru.chr13.2392 Acer truncatum HOM05D003880 ORTHO05D004959 4.4e-205 718.4 582 67.9
CiPaw.03G019400 Carya illinoinensis HOM05D003880 ORTHO05D004959 1.7e-204 716.5 531 69.9
Gohir.D09G112200 Gossypium hirsutum HOM05D003880 ORTHO05D004959 2.2e-204 716.1 588 66.3
Cfa008134 Carpinus fangiana HOM05D003880 ORTHO05D004959 2.8e-204 715.7 555 69.7
ClCG08G000380 Citrullus lanatus HOM05D003880 ORTHO05D004959 2.4e-203 712.6 612 65.4
Eucgr.F02584 Eucalyptus grandis HOM05D003880 ORTHO05D004959 1.2e-202 710.3 605 64.3
Ciclev10000797m.g Citrus clementina HOM05D003880 ORTHO05D004959 7.7e-202 707.6 573 66.7
Actinidia23014 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.0e-201 707.2 612 63.6
COL.COLO4_12797 Corchorus olitorius HOM05D003880 ORTHO05D004959 2.3e-201 706.1 537 69.5
GSVIVG01012776001 Vitis vinifera HOM05D003880 ORTHO05D004959 2.9e-201 705.7 543 68.3
Prupe.1G551200 Prunus persica HOM05D003880 ORTHO05D004959 1.9e-200 703.0 595 64.5
Duzib116G0170 Durio zibethinus HOM05D003880 ORTHO05D004959 4.3e-200 701.8 589 65.7
Dinv41735 Davidia involucrata HOM05D003880 ORTHO05D004959 2.1e-199 699.5 551 67.5
Actinidia02567 Actinidia chinensis HOM05D003880 ORTHO05D004959 6.1e-199 698.0 612 63.4
PGR042G0805 Punica granatum HOM05D003880 ORTHO05D004959 1.8e-198 696.4 605 65.0
MELO3C022212.2 Cucumis melo HOM05D003880 ORTHO05D004959 5.7e-197 691.4 609 64.5
Phvul.005G000500 Phaseolus vulgaris HOM05D003880 ORTHO05D004959 3.7e-196 688.7 579 65.3
QL09p004950 Quercus lobata HOM05D003880 ORTHO05D004959 6.4e-196 688.0 578 64.5
CiPaw.04G012900 Carya illinoinensis HOM05D003880 ORTHO05D004959 2.4e-195 686.0 411 81.8
MD05G1093300 Malus domestica HOM05D003880 ORTHO05D004959 2.4e-195 686.0 593 63.6
CsaV3_5G040400 Cucumis sativus L. HOM05D003880 ORTHO05D004959 1.2e-194 683.7 611 64.0
PSO063G4997 Papaver somniferum HOM05D003880 ORTHO05D004959 2.0e-194 682.9 593 64.1
MD10G1100400 Malus domestica HOM05D003880 ORTHO05D004959 5.9e-194 681.4 594 63.0
PSO017G2071 Papaver somniferum HOM05D003880 ORTHO05D004959 7.8e-194 681.0 593 63.1
VMungo1080G1836 Vigna mungo HOM05D003880 ORTHO05D004959 1.3e-193 680.2 578 63.5
FvH4_5g32350 Fragaria vesca HOM05D003880 ORTHO05D004959 1.7e-193 679.9 598 62.2
FAN18G3221 Fragaria x ananassa HOM05D003880 ORTHO05D004959 2.3e-193 679.5 615 61.3
Aqoxy4G01178 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 3.0e-193 679.1 603 60.4
Lj3g0009516 Lotus japonicus HOM05D003880 ORTHO05D004959 3.0e-193 679.1 603 64.0
Hma1.2p1_0004F.1_g004030 Hydrangea macrophylla HOM05D003880 ORTHO05D004959 3.9e-193 678.7 413 79.9
Lalb_Chr09g0332911 Lupinus albus HOM05D003880 ORTHO05D004959 3.9e-193 678.7 427 78.7
FAN08G3431 Fragaria x ananassa HOM05D003880 ORTHO05D004959 5.0e-193 678.3 599 61.9
Lj7A289G27 Lonicera japonica HOM05D003880 ORTHO05D004959 6.6e-193 677.9 433 77.6
FAN13G2674 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.1e-192 677.2 595 62.0
MBI17_g21473_MAGBIO Magnolia biondii HOM05D003880 ORTHO05D004959 1.5e-192 676.8 583 63.5
Peaxi162Scf00391g00533 Petunia axillaris HOM05D003880 ORTHO05D004959 2.5e-192 676.0 519 67.6
Sc23g0001360 Simmondsia chinensis HOM05D003880 ORTHO05D004959 4.3e-192 675.2 586 61.8
arahy.Tifrunner.gnm1.ann1.HC95SM Arachis hypogaea HOM05D003880 ORTHO05D004959 1.2e-191 673.7 445 76.4
CANSAT11G2580 Cannabis sativa HOM05D003880 ORTHO05D004959 3.6e-191 672.2 607 62.4
Nitab4.5_0000167g0290 Nicotiana tabacum HOM05D003880 ORTHO05D004959 6.2e-191 671.4 606 61.4
HanXRQChr09g0260531 Helianthus annuus HOM05D003880 ORTHO05D004959 1.4e-190 670.2 597 61.5
Lj4A481T13 Lonicera japonica HOM05D003880 ORTHO05D004959 4.0e-190 668.7 511 68.3
FAN04G0842 Fragaria x ananassa HOM05D003880 ORTHO05D004959 6.8e-190 667.9 594 61.4
arahy.Tifrunner.gnm1.ann1.9B0XDD Arachis hypogaea HOM05D003880 ORTHO05D004959 8.9e-190 667.5 547 65.8
Gohir.A09G115400 Gossypium hirsutum HOM05D003880 ORTHO05D004959 1.5e-189 666.8 587 64.1
Lsat_1_v5_gn_1_10140 Lactuca sativa HOM05D003880 ORTHO05D004959 1.5e-189 666.8 559 64.0
vmacro12476 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 3.4e-189 665.6 561 62.7
THA.LOC104800120 Tarenaya hassleriana HOM05D003880 ORTHO05D004959 5.8e-189 664.8 514 66.9
Cc00_g06530 Coffea canephora HOM05D003880 ORTHO05D004959 7.5e-189 664.5 557 64.8
Glyma.06G324700 Glycine max HOM05D003880 ORTHO05D004959 7.5e-189 664.5 577 63.6
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 7.5e-189 664.5 604 62.1
SGA_v2.0_scaffold24G10581 Striga asiatica HOM05D003880 ORTHO05D004959 2.2e-188 662.9 600 63.0
Rhsim06G0088000 Rhododendron simsii HOM05D003880 ORTHO05D004959 2.9e-188 662.5 606 60.2
Psat1g000520 Pisum sativum HOM05D003880 ORTHO05D004959 3.7e-188 662.1 425 76.9
Actinidia05639 Actinidia chinensis HOM05D003880 ORTHO05D004959 4.9e-188 661.8 537 67.0
Medtr3g005360 Medicago truncatula HOM05D003880 ORTHO05D004959 1.1e-187 660.6 405 80.2
Solyc11g020780.2 Solanum lycopersicum HOM05D003880 ORTHO05D004959 1.1e-187 660.6 594 62.1
Sopen11g010860 Solanum pennellii HOM05D003880 ORTHO05D004959 1.1e-187 660.6 598 62.2
Migut.C01288 Erythranthe guttata HOM05D003880 ORTHO05D004959 1.9e-187 659.8 607 59.8
vmacro00757 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 2.4e-187 659.4 581 61.8
RcHm_v2.0_Chr7g0228851 Rosa chinensis HOM05D003880 ORTHO05D004959 3.2e-187 659.1 594 61.3
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 9.2e-187 657.5 507 67.1
SalBow7G4466 Salvia bowleyana HOM05D003880 ORTHO05D004959 9.2e-187 657.5 569 63.1
DCAR_001082 Daucus carota HOM05D003880 ORTHO05D004959 1.2e-186 657.1 437 73.9
Lalb_Chr05g0224761 Lupinus albus HOM05D003880 ORTHO05D004959 2.0e-186 656.4 443 75.4
Migut.N03362 Erythranthe guttata HOM05D003880 ORTHO05D004959 4.6e-186 655.2 594 61.6
Lsat_1_v5_gn_4_136101 Lactuca sativa HOM05D003880 ORTHO05D004959 6.0e-186 654.8 525 64.6
Glyma.04G256800 Glycine max HOM05D003880 ORTHO05D004959 1.3e-185 653.7 559 63.7
CAN.G259.4 Capsicum annuum HOM05D003880 ORTHO05D004959 1.7e-185 653.3 581 61.6
Ca_13965_v3 Cicer arietinum L. HOM05D003880 ORTHO05D004959 2.3e-185 652.9 407 79.6
Migut.O00683 Erythranthe guttata HOM05D003880 ORTHO05D004959 5.0e-185 651.7 594 61.3
PGSC0003DMG400009278 Solanum tuberosum HOM05D003880 ORTHO05D004959 6.6e-185 651.4 599 61.4
Oeu025391.1 Olea europaea HOM05D003880 ORTHO05D004959 1.2e-183 647.1 528 65.9
Aa31LG4G10790 Aethionema arabicum HOM05D003880 ORTHO05D004959 2.1e-183 646.4 545 62.8
Carub.0001s2216 Capsella rubella HOM05D003880 ORTHO05D004959 4.7e-183 645.2 537 64.8
SalBow6G4536 Salvia bowleyana HOM05D003880 ORTHO05D004959 4.7e-183 645.2 592 60.6
SalBow6G5395 Salvia bowleyana HOM05D003880 ORTHO05D004959 4.7e-183 645.2 591 60.7
Hund16787 Selenicereus undatus HOM05D003880 ORTHO05D004959 8.1e-183 644.4 607 59.5
MSTRG.1545 Avicennia marina HOM05D003880 ORTHO05D004959 1.8e-182 643.3 612 60.8
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 2.3e-182 642.9 541 64.0
Aqoxy7G03411 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 3.1e-182 642.5 411 75.4
AUR62023520 Chenopodium quinoa HOM05D003880 ORTHO05D004959 3.1e-182 642.5 509 65.4
Sp5g27110 Schrenkiella parvula HOM05D003880 ORTHO05D004959 3.1e-182 642.5 543 62.2
Os01g0874100 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 1.5e-181 640.2 448 71.4
CARHR064840 Cardamine hirsuta HOM05D003880 ORTHO05D004959 2.0e-181 639.8 537 62.8
Thhalv10018309m.g Eutrema salsugineum HOM05D003880 ORTHO05D004959 2.6e-181 639.4 543 61.1
AUR62004625 Chenopodium quinoa HOM05D003880 ORTHO05D004959 1.7e-180 636.7 585 59.8
TPR.G25498 Trifolium pratense HOM05D003880 ORTHO05D004959 4.9e-180 635.2 407 77.4
BcaB03g14926 Brassica carinata HOM05D003880 ORTHO05D004959 6.4e-180 634.8 545 61.5
unitig_747.g21476 Utricularia gibba HOM05D003880 ORTHO05D004959 1.9e-179 633.3 586 60.9
BcaC08g46654 Brassica carinata HOM05D003880 ORTHO05D004959 5.4e-179 631.7 544 62.3
Carub.0002s1882 Capsella rubella HOM05D003880 ORTHO05D004959 7.1e-179 631.3 592 59.1
SGA_v2.0_scaffold149G36569 Striga asiatica HOM05D003880 ORTHO05D004959 7.1e-179 631.3 592 59.0
BolC6t39667H Brassica oleracea HOM05D003880 ORTHO05D004959 1.6e-178 630.2 544 61.8
ATR0661G349 Amborella trichopoda HOM05D003880 ORTHO05D004959 2.7e-178 629.4 603 58.5
C06p46140 Brassica napus HOM05D003880 ORTHO05D004959 7.8e-178 627.9 563 60.9
CDE04G1100 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 2.3e-177 626.3 486 66.5
A07p38210 Brassica napus HOM05D003880 ORTHO05D004959 5.1e-177 625.2 543 61.9
Zm00001eb146250 Zea mays HOM05D003880 ORTHO05D004959 1.5e-176 623.6 533 62.3
BraA07t31387Z Brassica rapa HOM05D003880 ORTHO05D004959 1.9e-176 623.2 543 61.7
AL2G31670 Arabidopsis lyrata HOM05D003880 ORTHO05D004959 2.5e-176 622.9 591 58.7
BcaC03g15327 Brassica carinata HOM05D003880 ORTHO05D004959 4.3e-176 622.1 535 61.3
C02p29320 Brassica napus HOM05D003880 ORTHO05D004959 4.3e-176 622.1 535 61.3
BolC2t08983H Brassica oleracea HOM05D003880 ORTHO05D004959 4.3e-176 622.1 535 61.3
DCAR_011525 Daucus carota HOM05D003880 ORTHO05D004959 2.8e-175 619.4 573 58.8
BcaB05g24701 Brassica carinata HOM05D003880 ORTHO05D004959 8.1e-175 617.8 555 60.4
CDE04G1048 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 1.1e-174 617.5 584 59.4
Os05g0430200 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 1.1e-174 617.5 405 74.6
A02p17640 Brassica napus HOM05D003880 ORTHO05D004959 2.3e-174 616.3 585 59.1
BraA02t06810Z Brassica rapa HOM05D003880 ORTHO05D004959 2.3e-174 616.3 585 59.1
HanXRQChr11g0326071 Helianthus annuus HOM05D003880 ORTHO05D004959 6.8e-174 614.8 507 64.5
EL10Ac1g00108 Beta vulgaris HOM05D003880 ORTHO05D004959 2.2e-172 609.8 411 74.7
unitig_0.g2129 Utricularia gibba HOM05D003880 ORTHO05D004959 3.7e-172 609.0 399 75.9
Zm00001eb348750 Zea mays HOM05D003880 ORTHO05D004959 6.4e-172 608.2 464 67.9
Ah.05g178350 Amaranthus hybridus HOM05D003880 ORTHO05D004959 2.4e-171 606.3 599 57.6
AT1G72040 Arabidopsis thaliana HOM05D003880 ORTHO05D004959 2.1e-170 603.2 581 58.0
Sed0018926 Sechium edule HOM05D003880 ORTHO05D004959 2.8e-167 592.8 542 61.3
Oeu004740.1 Olea europaea HOM05D003880 ORTHO05D004959 1.4e-163 580.5 433 69.5
Actinidia03514 Actinidia chinensis HOM05D003880 ORTHO05D004959 3.2e-163 579.3 361 77.8
CDE04G1975 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 1.6e-162 577.0 407 69.8
SHI35657 Sapria himalayana HOM05D003880 ORTHO05D004959 3.3e-160 569.3 426 69.2
Nitab4.5_0003010g0030 Nicotiana tabacum HOM05D003880 ORTHO05D004959 2.1e-146 523.5 593 53.5
Pp3c12_15090 Physcomitrium patens HOM05D003880 ORTHO05D004959 3.7e-143 512.7 458 58.3
SEGI_26933 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 6.2e-143 511.9 354 68.9
Mapoly0028s0143 Marchantia polymorpha HOM05D003880 ORTHO05D004959 2.2e-140 503.4 482 56.8
SMO228G0044 Selaginella moellendorffii HOM05D003880 ORTHO05D004959 3.2e-131 473.0 374 65.2
TAR624G0155 Trochodendron aralioides HOM05D003880 ORTHO05D004959 1.0e-129 468.0 375 65.6
SEGI_09673 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 3.3e-128 463.0 302 71.5
PRCOL_00007080 Prasinoderma coloniale HOM05D003880 ORTHO05D004959 1.8e-97 360.9 381 50.7
BraA02t08014Z Brassica rapa HOM05D003880 ORTHO05D004959 4.0e-97 359.8 209 79.9
A02p29920 Brassica napus HOM05D003880 ORTHO05D004959 2.3e-92 344.0 195 81.5
FAN04G1012 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.4e-89 334.7 379 53.0
BcaNung01810 Brassica carinata HOM05D003880 ORTHO05D004959 7.3e-83 312.4 178 81.5
CSS0041582 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 5.8e-72 276.2 157 80.3
CSS0012164 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 9.8e-72 275.4 154 81.8
CSS0024003 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 9.8e-72 275.4 154 81.8
AagrBONN_evm.TU.Sc2ySwM_344.3442 Anthoceros agrestis HOM05D003880 ORTHO05D004959 3.7e-71 273.5 193 67.9
MCO01G353 Micromonas commoda HOM05D003880 ORTHO05D004959 1.2e-64 251.9 396 38.1
HPP92_019380 Vanilla planifolia HOM05D003880 ORTHO05D004959 1.6e-58 231.5 460 36.7
Cre02.g095350 Chlamydomonas reinhardtii HOM05D003880 ORTHO05D004959 3.3e-51 207.2 183 54.6
HPP92_027627 Vanilla planifolia HOM05D003880 ORTHO05D004959 9.6e-51 205.7 274 49.3
Pp3c15_5240 Physcomitrium patens HOM05D003880 ORTHO05D004959 6.4e-47 193.0 264 39.0
HPP92_019377 Vanilla planifolia HOM05D003880 ORTHO05D004959 3.0e-44 184.1 127 72.4
BolC5t31452H Brassica oleracea HOM05D003880 ORTHO05D004959 1.4e-41 175.3 109 77.1
BolC8t50393H Brassica oleracea HOM05D003880 ORTHO05D004959 6.9e-41 172.9 185 51.4
Pp3c4_20480 Physcomitrium patens HOM05D003880 ORTHO05D004959 1.5e-35 155.2 110 67.3
Actinidia18360 Actinidia chinensis HOM05D003880 ORTHO05D004959 6.9e-33 146.4 88 76.1
BcaB08g34411 Brassica carinata HOM05D003880 ORTHO05D004959 5.8e-32 143.3 156 53.2
Mapoly0080s0005 Marchantia polymorpha HOM05D003880 ORTHO05D004959 5.8e-32 143.3 215 35.8
C08p27770 Brassica napus HOM05D003880 ORTHO05D004959 2.2e-31 141.4 83 75.9
Oeu021226.1 Olea europaea HOM05D003880 ORTHO05D019999 1.4e-30 138.7 99 71.7
BcaC07g39615 Brassica carinata HOM05D003880 ORTHO05D004959 3.2e-30 137.5 83 73.5
BcaB05g25101 Brassica carinata HOM05D003880 ORTHO05D019999 5.6e-27 126.7 125 52.8
HPP92_027628 Vanilla planifolia HOM05D003880 ORTHO05D019999 7.4e-19 99.8 120 48.3
Oeu004742.1 Olea europaea HOM05D003880 ORTHO05D004959 2.2e-15 88.2 226 37.2
BcaB07g33153 Brassica carinata HOM05D003880 ORTHO05D019999 3.8e-15 87.4 95 49.5
PRCOL_00005076 Prasinoderma coloniale HOM05D003880 ORTHO05D333288 2.7e-13 81.3 187 33.2
BcaB02g09679 Brassica carinata HOM05D003880 ORTHO05D019999 1.5e-11 75.5 87 47.1
CAN.G308.60 Capsicum annuum HOM05D003880 ORTHO05D000314 3.7e-10 70.9 111 37.8
Lsat_1_v5_gn_1_10160 Lactuca sativa HOM05D003880 ORTHO05D019999 1.4e-09 68.9 41 78.0
Rhsim01G0139900 Rhododendron simsii HOM05D002321 ORTHO05D006445 2.0e-08 65.1 59 61.0


User provided reference genes

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