Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.019G079101 Populus trichocarpa HOM05D004571 ORTHO05D005334 1.6e-52 209.1 103 100.0
Sabra19G0089800 Salix brachista HOM05D004571 ORTHO05D005334 2.2e-46 188.7 98 92.9
Potri.013G105766 Populus trichocarpa HOM05D004571 ORTHO05D005334 2.1e-41 172.2 103 83.5
Sabra13G0091300 Salix brachista HOM05D004571 ORTHO05D005334 9.5e-34 146.7 96 77.1
Prupe.1G555400 Prunus persica HOM05D004571 ORTHO05D005334 1.5e-31 139.4 98 72.4
CiPaw.07G235800 Carya illinoinensis HOM05D004571 ORTHO05D005334 9.9e-31 136.7 78 82.1
MD15G1405800 Malus domestica HOM05D004571 ORTHO05D005334 1.7e-30 136.0 98 70.4
COL.COLO4_24652 Corchorus olitorius HOM05D004571 ORTHO05D005334 2.2e-30 135.6 75 85.3
MD08G1217900 Malus domestica HOM05D004571 ORTHO05D005334 2.9e-30 135.2 98 71.4
Dinv41758 Davidia involucrata HOM05D004571 ORTHO05D005334 3.7e-30 134.8 103 68.9
QL02p026432 Quercus lobata HOM05D004571 ORTHO05D005334 3.7e-30 134.8 99 68.7
Thecc.08G192400 Theobroma cacao HOM05D004571 ORTHO05D005334 6.4e-30 134.0 103 67.0
CANSAT25G3741 Cannabis sativa HOM05D004571 ORTHO05D005334 1.9e-29 132.5 98 69.4
Haze_21312 Corylus avellana HOM05D004571 ORTHO05D005334 1.9e-29 132.5 78 80.8
Manes.02G223200 Manihot esculenta HOM05D004571 ORTHO05D005334 2.4e-29 132.1 81 75.3
Hma1.2p1_0374F.1_g138460 Hydrangea macrophylla HOM05D004571 ORTHO05D005334 3.2e-29 131.7 98 69.4
TWI14G1164 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 7.1e-29 130.6 74 82.4
Ciclev10002721m.g Citrus clementina HOM05D004571 ORTHO05D005334 1.6e-28 129.4 100 65.0
Sed0021715 Sechium edule HOM05D004571 ORTHO05D005334 2.7e-28 128.6 79 75.9
Atru.chr13.2366 Acer truncatum HOM05D004571 ORTHO05D005334 3.5e-28 128.3 74 81.1
Rhsim11G0053000 Rhododendron simsii HOM05D004571 ORTHO05D005334 6.0e-28 127.5 74 82.4
CiPaw.08G002900 Carya illinoinensis HOM05D004571 ORTHO05D005334 7.8e-28 127.1 78 74.4
TAR381G0940 Trochodendron aralioides HOM05D004571 ORTHO05D005334 7.8e-28 127.1 72 84.7
Medtr3g005050 Medicago truncatula HOM05D004571 ORTHO05D005334 1.0e-27 126.7 71 81.7
MELO3C022229.2 Cucumis melo HOM05D004571 ORTHO05D005334 1.7e-27 125.9 76 76.3
RcHm_v2.0_Chr7g0227581 Rosa chinensis HOM05D004571 ORTHO05D005334 1.7e-27 125.9 98 66.3
ClCG08G000160 Citrullus lanatus HOM05D004571 ORTHO05D005334 2.3e-27 125.6 84 69.0
TPR.G25514 Trifolium pratense HOM05D004571 ORTHO05D005334 2.3e-27 125.6 72 79.2
FAN13G1323 Fragaria x ananassa HOM05D004571 ORTHO05D005334 3.0e-27 125.2 105 63.8
Cpa.g.sc66.1 Carica papaya HOM05D004571 ORTHO05D005334 3.9e-27 124.8 89 67.4
FAN04G0250 Fragaria x ananassa HOM05D004571 ORTHO05D005334 5.1e-27 124.4 100 66.0
GSVIVG01026083001 Vitis vinifera HOM05D004571 ORTHO05D005334 8.6e-27 123.6 98 67.3
ATR1136G048 Amborella trichopoda HOM05D004571 ORTHO05D005334 1.1e-26 123.2 82 68.3
CsaV3_5G040560 Cucumis sativus L. HOM05D004571 ORTHO05D005334 1.5e-26 122.9 76 73.7
Gohir.D13G122900 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.5e-26 122.9 74 77.0
Gohir.D13G123000 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.5e-26 122.9 74 77.0
Gorai.013G137900 Gossypium raimondii HOM05D004571 ORTHO05D005334 1.5e-26 122.9 74 77.0
Actinidia29414 Actinidia chinensis HOM05D004571 ORTHO05D005334 1.9e-26 122.5 74 79.7
Migut.C01321 Erythranthe guttata HOM05D004571 ORTHO05D005334 1.9e-26 122.5 70 81.4
FvH4_5g31700 Fragaria vesca HOM05D004571 ORTHO05D005334 1.9e-26 122.5 100 65.0
VMungo1080G1505 Vigna mungo HOM05D004571 ORTHO05D005334 1.9e-26 122.5 77 72.7
FAN18G0720 Fragaria x ananassa HOM05D004571 ORTHO05D005334 2.5e-26 122.1 100 64.0
Carub.0001s2205 Capsella rubella HOM05D004571 ORTHO05D005334 3.3e-26 121.7 102 59.8
Gohir.A13G119100 Gossypium hirsutum HOM05D004571 ORTHO05D005334 3.3e-26 121.7 74 75.7
Phvul.005G000100 Phaseolus vulgaris HOM05D004571 ORTHO05D005334 3.3e-26 121.7 72 76.4
Ca_13497_v3 Cicer arietinum L. HOM05D004571 ORTHO05D005334 4.3e-26 121.3 72 76.4
Glyma.06G325200 Glycine max HOM05D004571 ORTHO05D005334 4.3e-26 121.3 83 63.9
Sp5g27250 Schrenkiella parvula HOM05D004571 ORTHO05D005334 5.6e-26 120.9 79 73.4
PSO017G1736 Papaver somniferum HOM05D004571 ORTHO05D005334 7.3e-26 120.6 86 69.8
PSO170G5138 Papaver somniferum HOM05D004571 ORTHO05D005334 7.3e-26 120.6 86 69.8
Psat1g003360 Pisum sativum HOM05D004571 ORTHO05D005334 9.5e-26 120.2 82 70.7
Glyma.04G256400 Glycine max HOM05D004571 ORTHO05D005334 1.2e-25 119.8 93 61.3
Gohir.A13G119200 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.2e-25 119.8 74 75.7
AT1G22520 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 1.6e-25 119.4 84 66.7
PGR042G2098 Punica granatum HOM05D004571 ORTHO05D005334 1.6e-25 119.4 73 76.7
Ah.05g178570 Amaranthus hybridus HOM05D004571 ORTHO05D005334 2.1e-25 119.0 98 65.3
Lj3g0024961 Lotus japonicus HOM05D004571 ORTHO05D005334 3.6e-25 118.2 72 75.0
Nn1g08340 Nelumbo nucifera HOM05D004571 ORTHO05D005334 3.6e-25 118.2 72 73.6
AL1G36060 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 4.7e-25 117.9 65 81.5
AL2G31830 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 4.7e-25 117.9 90 67.8
A07p30330 Brassica napus HOM05D004571 ORTHO05D005334 4.7e-25 117.9 85 67.1
BraA07t30670Z Brassica rapa HOM05D004571 ORTHO05D005334 4.7e-25 117.9 85 67.1
MD17G1233400 Malus domestica HOM05D004571 ORTHO05D005334 4.7e-25 117.9 76 76.3
Hund27115 Selenicereus undatus HOM05D004571 ORTHO05D005334 6.2e-25 117.5 98 63.3
C06p46340 Brassica napus HOM05D004571 ORTHO05D005334 1.1e-24 116.7 77 74.0
BolC6t39679H Brassica oleracea HOM05D004571 ORTHO05D005334 1.1e-24 116.7 77 74.0
Carub.0002s1897 Capsella rubella HOM05D004571 ORTHO05D005334 1.4e-24 116.3 98 61.2
TAR628G0297 Trochodendron aralioides HOM05D004571 ORTHO05D005334 1.4e-24 116.3 90 65.6
BcaB03g14198 Brassica carinata HOM05D004571 ORTHO05D005334 1.8e-24 115.9 78 69.2
A07p38280 Brassica napus HOM05D004571 ORTHO05D005334 1.8e-24 115.9 65 80.0
AUR62004601 Chenopodium quinoa HOM05D004571 ORTHO05D005334 1.8e-24 115.9 68 77.9
AUR62023543 Chenopodium quinoa HOM05D004571 ORTHO05D005334 1.8e-24 115.9 68 77.9
HanXRQChr02g0036591 Helianthus annuus HOM05D004571 ORTHO05D005334 1.8e-24 115.9 64 84.4
Aa31LG4G8400 Aethionema arabicum HOM05D004571 ORTHO05D005334 2.4e-24 115.5 77 72.7
arahy.Tifrunner.gnm1.ann1.ET922W Arachis hypogaea HOM05D004571 ORTHO05D005334 2.4e-24 115.5 77 70.1
BcaB03g14960 Brassica carinata HOM05D004571 ORTHO05D005334 2.4e-24 115.5 75 70.7
CARHR022880 Cardamine hirsuta HOM05D004571 ORTHO05D005334 2.4e-24 115.5 81 66.7
Oeu044957.1 Olea europaea HOM05D004571 ORTHO05D005334 2.4e-24 115.5 90 67.8
CANSAT56G3739 Cannabis sativa HOM05D004571 ORTHO05D005334 3.1e-24 115.2 76 72.4
Sc23g0001520 Simmondsia chinensis HOM05D004571 ORTHO05D005334 3.1e-24 115.2 80 67.5
BcaB03g11911 Brassica carinata HOM05D004571 ORTHO05D005334 4.0e-24 114.8 86 65.1
Nn5g27495 Nelumbo nucifera HOM05D004571 ORTHO05D005334 4.0e-24 114.8 65 81.5
AT1G72170 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 5.2e-24 114.4 75 73.3
arahy.Tifrunner.gnm1.ann1.Q0KDHL Arachis hypogaea HOM05D008831 ORTHO05D005334 5.2e-24 114.4 72 73.6
EL10Ac1g00135 Beta vulgaris HOM05D004571 ORTHO05D005334 5.2e-24 114.4 76 71.1
DCAR_014081 Daucus carota HOM05D004571 ORTHO05D005334 5.2e-24 114.4 69 75.4
Duzib116G0804 Durio zibethinus HOM05D004571 ORTHO05D005334 5.2e-24 114.4 87 67.8
CDE08G1034 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 6.8e-24 114.0 82 67.1
BraA07t31392Z Brassica rapa HOM05D004571 ORTHO05D005334 8.9e-24 113.6 78 70.5
THA.LOC104800135 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 8.9e-24 113.6 81 69.1
CARHR065020 Cardamine hirsuta HOM05D004571 ORTHO05D005334 1.2e-23 113.2 79 68.4
A08p28490 Brassica napus HOM05D004571 ORTHO05D005334 1.5e-23 112.8 64 79.7
BraA08t34777Z Brassica rapa HOM05D004571 ORTHO05D005334 1.5e-23 112.8 64 79.7
Thhalv10009192m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 1.5e-23 112.8 81 66.7
Sp1g20030 Schrenkiella parvula HOM05D004571 ORTHO05D005334 1.5e-23 112.8 81 66.7
CDE02G1838 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 2.0e-23 112.5 82 65.9
Aa31LG7G6430 Aethionema arabicum HOM05D004571 ORTHO05D005334 3.4e-23 111.7 64 82.8
CSS0010340 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 3.4e-23 111.7 98 61.2
ECA247G3605 Erigeron canadensis HOM05D004571 ORTHO05D005334 3.4e-23 111.7 67 76.1
Actinidia03516 Actinidia chinensis HOM05D004571 ORTHO05D005334 4.4e-23 111.3 74 73.0
BcaC07g39167 Brassica carinata HOM05D004571 ORTHO05D005334 4.4e-23 111.3 64 79.7
C08p21600 Brassica napus HOM05D004571 ORTHO05D005334 4.4e-23 111.3 89 59.6
Zm00001eb063990 Zea mays HOM05D004571 ORTHO05D005334 4.4e-23 111.3 77 67.5
BolC8t49798H Brassica oleracea HOM05D004571 ORTHO05D005334 7.6e-23 110.5 64 78.1
C06p35100 Brassica napus HOM05D004571 ORTHO05D005334 9.9e-23 110.2 83 68.7
BolC6t38614H Brassica oleracea HOM05D004571 ORTHO05D005334 9.9e-23 110.2 83 68.7
SEGI_09168 Sequoiadendron giganteum HOM05D004571 ORTHO05D005334 9.9e-23 110.2 76 67.1
HanXRQChr04g0101791 Helianthus annuus HOM05D004571 ORTHO05D005334 1.3e-22 109.8 64 79.7
SalBow7G4145 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.7e-22 109.4 71 71.8
Aqoxy5G02645 Aquilegia oxysepala HOM05D004571 ORTHO05D005334 2.2e-22 109.0 93 62.4
THA.LOC104809727 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 2.2e-22 109.0 88 65.9
SGA_v2.0_scaffold24G10606 Striga asiatica HOM05D004571 ORTHO05D005334 2.9e-22 108.6 75 68.0
Os03g0840900 Oryza sativa ssp. japonica HOM05D004571 ORTHO05D005334 4.9e-22 107.8 82 63.4
Lsat_1_v5_gn_1_25881 Lactuca sativa HOM05D004571 ORTHO05D005334 1.1e-21 106.7 64 78.1
Nitab4.5_0001463g0030 Nicotiana tabacum HOM05D004571 ORTHO05D005334 1.9e-21 105.9 80 61.2
Nitab4.5_0005616g0050 Nicotiana tabacum HOM05D004571 ORTHO05D005334 1.9e-21 105.9 80 61.2
ECA246G2468 Erigeron canadensis HOM05D004571 ORTHO05D005334 2.4e-21 105.5 70 71.4
unitig_26.g9866 Utricularia gibba HOM05D004571 ORTHO05D005334 2.4e-21 105.5 67 73.1
Solyc11g027870.2 Solanum lycopersicum HOM05D004571 ORTHO05D005334 4.2e-21 104.8 67 71.6
Sopen11g022630 Solanum pennellii HOM05D004571 ORTHO05D005334 4.2e-21 104.8 67 71.6
Zm00001eb211000 Zea mays HOM05D004571 ORTHO05D005334 4.2e-21 104.8 82 63.4
PGSC0003DMG400025645 Solanum tuberosum HOM05D004571 ORTHO05D005334 9.2e-21 103.6 67 70.1
DCAR_017443 Daucus carota HOM05D004571 ORTHO05D005334 1.2e-20 103.2 68 69.1
Thhalv10019513m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 1.2e-20 103.2 79 65.8
HPP92_012688 Vanilla planifolia HOM05D004571 ORTHO05D005334 1.6e-20 102.8 66 69.7
HPP92_012699 Vanilla planifolia HOM05D004571 ORTHO05D005334 4.6e-20 101.3 66 68.2
SalBow5G3518 Salvia bowleyana HOM05D002016 ORTHO05D002251 6.0e-20 100.9 71 66.2
MBI16_g31756_MAGBIO Magnolia biondii HOM05D004571 ORTHO05D005334 7.8e-20 100.5 59 78.0
HPP92_016944 Vanilla planifolia HOM05D004571 ORTHO05D005334 7.8e-20 100.5 80 61.2
Cc10_g09660 Coffea canephora HOM05D004571 ORTHO05D005334 1.0e-19 100.1 68 64.7
CANSAT80G2522 Cannabis sativa HOM05D004571 ORTHO05D005334 1.3e-19 99.8 63 73.0
HanXRQChr13g0402341 Helianthus annuus HOM05D004571 ORTHO05D005334 1.3e-19 99.8 61 77.0
PSO170G6605 Papaver somniferum HOM05D004571 ORTHO05D005334 1.5e-18 96.3 87 56.3
A07p14330 Brassica napus HOM05D004571 ORTHO05D005334 2.5e-18 95.5 66 65.2
BraA07t29189Z Brassica rapa HOM05D004571 ORTHO05D005334 2.5e-18 95.5 66 65.2
AagrBONN_evm.TU.Sc2ySwM_344.525 Anthoceros agrestis HOM05D004571 ORTHO05D005334 5.6e-18 94.4 64 65.6
CBR_g28554 Chara braunii HOM05D004571 ORTHO05D005334 3.6e-17 91.7 96 51.0
Peaxi162Scf00076g00210 Petunia axillaris HOM05D004571 ORTHO05D005334 3.6e-17 91.7 75 57.3
Pp3c6_25110 Physcomitrium patens HOM05D004571 ORTHO05D005334 3.6e-17 91.7 59 71.2
SalBow8G4375 Salvia bowleyana HOM05D004571 ORTHO05D005334 6.2e-17 90.9 58 70.7
Pp3c5_3370 Physcomitrium patens HOM05D004571 ORTHO05D005334 8.1e-17 90.5 59 69.5
SMO170G0007 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 1.1e-16 90.1 60 68.3
Peaxi162Scf00688g00440 Petunia axillaris HOM05D004571 ORTHO05D005334 1.4e-16 89.7 71 56.3
SalBow1G4736 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.8e-16 89.4 58 69.0
SalBow7G3147 Salvia bowleyana HOM05D004571 ORTHO05D005334 2.4e-16 89.0 58 69.0
Mapoly0097s0059 Marchantia polymorpha HOM05D004571 ORTHO05D005334 2.0e-15 85.9 63 60.3
Pp3c16_13970 Physcomitrium patens HOM05D004571 ORTHO05D005334 7.6e-15 84.0 61 63.9
AagrBONN_evm.TU.Sc2ySwM_117.1227 Anthoceros agrestis HOM05D004571 ORTHO05D005334 1.7e-14 82.8 64 59.4
C07p21100 Brassica napus HOM05D004571 ORTHO05D005334 2.2e-14 82.4 110 42.7
SalBow1G5773 Salvia bowleyana HOM05D004571 ORTHO05D005334 8.4e-14 80.5 52 69.2
CSS0023243 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 5.4e-13 77.8 49 73.5
SMO356G0601 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 6.6e-11 70.9 63 47.6
TWI23G0269 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 6.6e-11 70.9 39 82.1
PRCOL_00006286 Prasinoderma coloniale HOM05D004571 ORTHO05D005334 2.8e-09 65.5 79 43.0
Gorai.013G138000 Gossypium raimondii HOM05D004571 ORTHO05D005334 8.1e-09 63.9 34 82.4
BcaC06g34972 Brassica carinata HOM05D004571 ORTHO05D005334 2.9e-06 55.5 43 62.8


User provided reference genes

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