Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.019G072700 Populus trichocarpa HOM05D005625 ORTHO05D007564 1.2e-308 1062.4 538 100.0
Sabra19G0084000 Salix brachista HOM05D005625 ORTHO05D007564 2.3e-288 995.0 556 91.0
Manes.18G118300 Manihot esculenta HOM05D005625 ORTHO05D007564 7.2e-242 840.5 540 78.0
TWI18G0532 Tripterygium wilfordii HOM05D005625 ORTHO05D007564 1.7e-235 819.3 539 75.7
CiPaw.04G063100 Carya illinoinensis HOM05D005625 ORTHO05D007564 8.9e-232 807.0 540 74.6
GSVIVG01036380001 Vitis vinifera HOM05D005625 ORTHO05D007564 2.6e-231 805.4 537 74.1
Haze_13951 Corylus avellana HOM05D005625 ORTHO05D007564 1.8e-229 799.3 541 74.3
Prupe.1G544200 Prunus persica HOM05D005625 ORTHO05D007564 1.8e-229 799.3 540 74.4
QL09p002063 Quercus lobata HOM05D005625 ORTHO05D007564 2.4e-229 798.9 536 75.2
Thecc.08G177300 Theobroma cacao HOM05D005625 ORTHO05D007564 4.1e-229 798.1 534 74.5
Gohir.A13G116000 Gossypium hirsutum HOM05D005625 ORTHO05D007564 3.3e-226 788.5 531 73.8
RcHm_v2.0_Chr7g0232101 Rosa chinensis HOM05D005625 ORTHO05D007564 1.2e-225 786.6 540 73.9
MD15G1395400 Malus domestica HOM05D005625 ORTHO05D007564 4.7e-225 784.6 532 73.3
COL.COLO4_24882 Corchorus olitorius HOM05D005625 ORTHO05D007564 1.8e-224 782.7 534 72.7
FvH4_5g33370 Fragaria vesca HOM05D005625 ORTHO05D007564 2.0e-223 779.2 540 73.3
FAN18G2766 Fragaria x ananassa HOM05D005625 ORTHO05D007564 3.4e-223 778.5 540 73.3
Gohir.D13G119200 Gossypium hirsutum HOM05D005625 ORTHO05D007564 3.4e-223 778.5 531 73.3
Gorai.013G133700 Gossypium raimondii HOM05D005625 ORTHO05D007564 9.8e-223 776.9 531 73.1
Ciclev10014850m.g Citrus clementina HOM05D005625 ORTHO05D007564 2.9e-222 775.4 531 72.3
CSS0007097 Camellia sinensis var. sinensis HOM05D005625 ORTHO05D007564 8.3e-222 773.9 535 72.1
Rhsim02G0173300 Rhododendron simsii HOM05D005625 ORTHO05D007564 5.4e-221 771.2 537 72.3
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 7.0e-221 770.8 531 71.8
Cfa008087 Carpinus fangiana HOM05D005625 ORTHO05D007564 1.3e-219 766.5 535 72.5
CANSAT56G1751 Cannabis sativa HOM05D005625 ORTHO05D007564 3.3e-218 761.9 530 70.9
FAN04G0928 Fragaria x ananassa HOM05D005625 ORTHO05D007564 3.7e-214 748.4 559 69.4
Actinidia29383 Actinidia chinensis HOM05D005625 ORTHO05D007564 8.3e-214 747.3 545 68.8
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 6.6e-211 737.6 535 69.9
Ah.02g127420 Amaranthus hybridus HOM05D005625 ORTHO05D007564 3.6e-209 731.9 530 68.1
PGR044G1301 Punica granatum HOM05D005625 ORTHO05D007564 1.1e-208 730.3 540 68.7
Aqoxy5G00836 Aquilegia oxysepala HOM05D005625 ORTHO05D007564 5.2e-208 728.0 540 67.6
MELO3C011830.2 Cucumis melo HOM05D005625 ORTHO05D007564 2.0e-207 726.1 537 66.9
Lj6g0017830 Lotus japonicus HOM05D005625 ORTHO05D007564 5.8e-207 724.5 529 68.4
AUR62024898 Chenopodium quinoa HOM05D005625 ORTHO05D007564 1.3e-206 723.4 530 67.7
CsaV3_1G044090 Cucumis sativus L. HOM05D005625 ORTHO05D007564 1.3e-206 723.4 532 67.1
AUR62030641 Chenopodium quinoa HOM05D005625 ORTHO05D007564 4.9e-206 721.5 546 66.7
DCAR_017431 Daucus carota HOM05D005625 ORTHO05D007564 6.4e-206 721.1 531 67.8
Oeu028924.1 Olea europaea HOM05D005625 ORTHO05D007564 8.3e-206 720.7 540 67.4
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 1.1e-205 720.3 530 67.9
Cc10_g08740 Coffea canephora HOM05D005625 ORTHO05D007564 1.9e-205 719.5 535 66.7
MBI03_g28415_MAGBIO Magnolia biondii HOM05D005625 ORTHO05D007564 1.9e-205 719.5 546 67.0
Lj7C421T14 Lonicera japonica HOM05D005625 ORTHO05D007564 4.1e-205 718.4 539 67.2
Phvul.006G130900 Phaseolus vulgaris HOM05D005625 ORTHO05D007564 2.7e-204 715.7 530 67.5
CAN.G990.6 Capsicum annuum HOM05D005625 ORTHO05D007564 1.7e-203 713.0 536 64.9
Lalb_Chr15g0088631 Lupinus albus HOM05D005625 ORTHO05D007564 3.9e-203 711.8 529 68.2
Glyma.09G021200 Glycine max HOM05D005625 ORTHO05D007564 9.5e-202 707.2 537 65.0
PSO170G6063 Papaver somniferum HOM05D005625 ORTHO05D007564 9.5e-202 707.2 528 67.4
Sopen11g018630 Solanum pennellii HOM05D005625 ORTHO05D007564 9.5e-202 707.2 535 64.9
Medtr2g029250 Medicago truncatula HOM05D005625 ORTHO05D007564 1.2e-201 706.8 540 65.9
PSO017G2953 Papaver somniferum HOM05D005625 ORTHO05D007564 2.1e-201 706.1 528 66.7
Duzib177G0227 Durio zibethinus HOM05D005625 ORTHO05D007564 8.1e-201 704.1 534 68.4
Eucgr.K01840 Eucalyptus grandis HOM05D005625 ORTHO05D007564 1.1e-200 703.7 537 64.2
THA.LOC104810982 Tarenaya hassleriana HOM05D005625 ORTHO05D007564 5.8e-199 698.0 533 65.5
Migut.C01373 Erythranthe guttata HOM05D005625 ORTHO05D007564 7.6e-199 697.6 530 64.7
arahy.Tifrunner.gnm1.ann1.U40EKY Arachis hypogaea HOM05D005625 ORTHO05D007564 2.2e-198 696.0 585 62.4
EL10Ac6g14591 Beta vulgaris HOM05D005625 ORTHO05D007564 4.9e-198 694.9 588 60.5
Sed0019265 Sechium edule HOM05D005625 ORTHO05D007564 6.4e-198 694.5 530 64.9
MSTRG.25496 Avicennia marina HOM05D005625 ORTHO05D007564 1.9e-197 693.0 531 65.0
AL2G31100 Arabidopsis lyrata HOM05D005625 ORTHO05D007564 2.1e-196 689.5 540 63.3
ECA232G1187 Erigeron canadensis HOM05D005625 ORTHO05D007564 2.1e-196 689.5 542 63.5
TPR.G17519 Trifolium pratense HOM05D005625 ORTHO05D007564 1.7e-195 686.4 537 63.5
Carub.0002s1829 Capsella rubella HOM05D005625 ORTHO05D007564 2.5e-194 682.6 540 62.8
AT1G71440 Arabidopsis thaliana HOM05D005625 ORTHO05D007564 1.3e-193 680.2 540 63.3
Thhalv10018392m.g Eutrema salsugineum HOM05D005625 ORTHO05D007564 1.1e-192 677.2 540 62.6
Dinv16108 Davidia involucrata HOM05D005625 ORTHO05D007564 1.2e-191 673.7 453 73.1
CARHR291240 Cardamine hirsuta HOM05D005625 ORTHO05D007564 9.9e-191 670.6 540 62.0
Psat1g169440 Pisum sativum HOM05D005625 ORTHO05D007564 9.9e-191 670.6 542 62.2
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 2.9e-190 669.1 528 63.3
Aa31LG4G9140 Aethionema arabicum HOM05D005625 ORTHO05D007564 3.8e-190 668.7 540 62.4
Sp5g26600 Schrenkiella parvula HOM05D005625 ORTHO05D007564 1.3e-187 660.2 540 61.5
Lsat_1_v5_gn_2_82040 Lactuca sativa HOM05D005625 ORTHO05D007564 3.0e-187 659.1 537 62.6
VMungo0540G1936 Vigna mungo HOM05D005625 ORTHO05D007564 3.6e-185 652.1 553 60.6
Cpa.g.sc21.80 Carica papaya HOM05D005625 ORTHO05D007564 1.1e-184 650.6 437 73.0
arahy.Tifrunner.gnm1.ann1.I4CKLR Arachis hypogaea HOM05D005625 ORTHO05D007564 5.3e-184 648.3 553 61.5
arahy.Tifrunner.gnm1.ann1.0NEN23 Arachis hypogaea HOM05D005625 ORTHO05D007564 4.5e-183 645.2 591 58.4
arahy.Tifrunner.gnm1.ann1.23CDJN Arachis hypogaea HOM05D005625 ORTHO05D007564 1.7e-182 643.3 506 65.6
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 1.8e-179 633.3 505 62.2
Sabra15G0066000 Salix brachista HOM05D005625 ORTHO05D007564 8.7e-179 630.9 354 89.3
Zm00001eb233200 Zea mays HOM05D005625 ORTHO05D007564 1.1e-178 630.6 542 58.5
Sabra15G0066200 Salix brachista HOM05D005625 ORTHO05D007564 4.3e-178 628.6 354 89.0
Nn5g27281 Nelumbo nucifera HOM05D005625 ORTHO05D007564 8.4e-174 614.4 437 70.3
SGA_v2.0_scaffold118G32606 Striga asiatica HOM05D005625 ORTHO05D007564 5.5e-173 611.7 551 57.7
HPP92_015711 Vanilla planifolia HOM05D005625 ORTHO05D007564 4.6e-172 608.6 532 58.6
BraA07t31336Z Brassica rapa HOM05D005625 ORTHO05D007564 3.9e-171 605.5 542 57.6
BolC6t39611H Brassica oleracea HOM05D005625 ORTHO05D007564 5.1e-171 605.1 542 57.2
unitig_578.g16118 Utricularia gibba HOM05D005625 ORTHO05D007564 6.7e-171 604.7 538 57.8
A07p37730 Brassica napus HOM05D005625 ORTHO05D007564 4.8e-169 598.6 542 57.0
BcaC08g46580 Brassica carinata HOM05D005625 ORTHO05D007564 4.5e-167 592.0 540 56.3
HPP92_026650 Vanilla planifolia HOM05D005625 ORTHO05D007564 4.5e-167 592.0 532 57.3
C06p45600 Brassica napus HOM05D005625 ORTHO05D007564 7.4e-162 574.7 542 55.4
Ca_07151_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 1.9e-157 560.1 539 55.5
Ca_00793_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 2.8e-153 546.2 539 54.7
Solyc11g042470.1 Solanum lycopersicum HOM05D005625 ORTHO05D007564 9.4e-149 531.2 406 63.5
Peaxi162Scf00078g00533 Petunia axillaris HOM05D005625 ORTHO05D007564 1.6e-148 530.4 403 63.8
Nitab4.5_0001155g0010 Nicotiana tabacum HOM05D005625 ORTHO05D007564 3.1e-144 516.2 400 63.2
vmacro11035 Vaccinium macrocarpon HOM05D005625 ORTHO05D007564 4.5e-143 512.3 573 51.1
Mapoly0057s0080 Marchantia polymorpha HOM05D005625 ORTHO05D007564 3.6e-132 476.1 549 46.8
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 1.5e-130 470.7 539 46.9
SHI16719 Sapria himalayana HOM05D005625 ORTHO05D007564 4.1e-128 462.6 506 50.4
SMO145G0237 Selaginella moellendorffii HOM05D005625 ORTHO05D007564 5.4e-128 462.2 538 44.8
Atru.chr11.652 Acer truncatum HOM05D005625 ORTHO05D007564 5.7e-122 442.2 288 75.7
ClCG03G011780 Citrullus lanatus HOM05D005625 ORTHO05D007564 2.3e-110 403.7 288 69.8
Pp3c9_6720 Physcomitrium patens HOM05D005625 ORTHO05D007564 3.7e-105 386.3 554 40.6
AagrBONN_evm.TU.Sc2ySwM_344.4267 Anthoceros agrestis HOM05D005625 ORTHO05D007564 8.1e-100 368.6 466 43.1
CBR_g2823 Chara braunii HOM05D005625 ORTHO05D007564 6.8e-91 339.0 556 38.7
SEGI_17074 Sequoiadendron giganteum HOM05D005625 ORTHO05D007564 8.4e-89 332.0 290 59.7
AagrBONN_evm.TU.Sc2ySwM_344.5166 Anthoceros agrestis HOM05D005625 ORTHO05D007564 6.0e-79 299.3 406 42.1
FAN08G2869 Fragaria x ananassa HOM05D005625 ORTHO05D007564 9.6e-77 292.0 205 73.7
Nitab4.5_0000213g0250 Nicotiana tabacum HOM05D005625 ORTHO05D007564 9.9e-74 282.0 212 65.6
MCO15G211 Micromonas commoda HOM05D005625 ORTHO05D007564 8.7e-70 268.9 576 31.4
PRCOL_00002543 Prasinoderma coloniale HOM05D005625 ORTHO05D007564 1.2e-66 258.5 567 31.4
Cre02.g095113 Chlamydomonas reinhardtii HOM05D005625 ORTHO05D007564 1.1e-59 235.3 531 31.3
ClCG03G011750 Citrullus lanatus HOM05D005625 ORTHO05D007564 1.4e-51 208.4 152 64.5
Peaxi162Scf00078g00534 Petunia axillaris HOM05D005625 ORTHO05D007564 1.8e-51 208.0 135 75.6
PGSC0003DMG400019987 Solanum tuberosum HOM05D005625 ORTHO05D007564 6.9e-51 206.1 157 63.7
Os05g0105300 Oryza sativa ssp. japonica HOM05D005625 ORTHO05D007564 9.0e-51 205.7 168 58.3
Nitab4.5_0000213g0260 Nicotiana tabacum HOM05D005625 ORTHO05D007564 4.2e-48 196.8 130 73.1
Glyma.15G127567 Glycine max HOM05D005625 ORTHO05D007564 3.3e-45 187.2 142 66.9
Glyma.15G127633 Glycine max HOM05D005625 ORTHO05D007564 1.9e-40 171.4 123 65.9
Nitab4.5_0001155g0020 Nicotiana tabacum HOM05D005625 ORTHO05D007564 1.4e-35 155.2 113 67.3
Solyc11g042500.3 Solanum lycopersicum HOM05D005625 ORTHO05D007564 6.7e-30 136.3 99 69.7
Hund08558 Selenicereus undatus HOM05D005625 ORTHO05D007564 2.6e-29 134.4 85 77.6
BcaB04g17633 Brassica carinata HOM05D005625 ORTHO05D007564 5.3e-27 126.7 100 62.0
Cfa026593 Carpinus fangiana HOM05D005625 ORTHO05D007564 5.7e-21 106.7 439 24.1
TPR.G26547 Trifolium pratense HOM05D005625 ORTHO05D022022 5.7e-21 106.7 196 37.2
ClCG03G011760 Citrullus lanatus HOM05D000004 ORTHO05D000002 8.5e-17 92.8 67 68.7
C02p28970 Brassica napus HOM05D005625 ORTHO05D022022 7.2e-16 89.7 89 53.9
arahy.Tifrunner.gnm1.ann1.GWKT0Q Arachis hypogaea HOM05D005625 ORTHO05D007564 1.6e-15 88.6 117 47.9
BolC2t08946H Brassica oleracea HOM05D005625 ORTHO05D022022 2.7e-15 87.8 71 62.0
arahy.Tifrunner.gnm1.ann1.6SNM9F Arachis hypogaea HOM05D005625 ORTHO05D007564 4.7e-15 87.0 114 50.9
A02p17310 Brassica napus HOM05D005625 ORTHO05D022022 5.2e-14 83.6 71 59.2
BraA02t06779Z Brassica rapa HOM05D005625 ORTHO05D022022 5.2e-14 83.6 71 59.2
Cpa.g.c47759 Carica papaya HOM05D005625 ORTHO05D007564 4.1e-11 73.9 49 73.5
PSO478G1928 Papaver somniferum HOM05D005625 ORTHO05D002418 5.9e-10 70.1 68 55.9
Lsat_1_v5_gn_3_107600 Lactuca sativa HOM05D000629 ORTHO05D013393 1.0e-09 69.3 74 45.9
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 2.2e-09 68.2 266 26.7
BolC2t08947H Brassica oleracea HOM05D005625 ORTHO05D022022 3.0e-06 57.8 87 39.1
arahy.Tifrunner.gnm1.ann1.P90V4Z Arachis hypogaea HOM05D002479 ORTHO05D002675 6.8e-06 56.6 34 73.5
arahy.Tifrunner.gnm1.ann1.QJV3PU Arachis hypogaea HOM05D003356 ORTHO05D086117 6.8e-06 56.6 74 50.0


User provided reference genes

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