Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1891.3 936 100.0
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 0.0e+00 1622.1 1058 79.1
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1600.1 934 85.0
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 0.0e+00 1501.9 1012 75.8
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 0.0e+00 1375.9 937 74.0
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 0.0e+00 1374.4 952 72.3
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 0.0e+00 1357.4 955 72.9
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1351.3 944 72.5
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1340.1 957 72.6
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1332.4 933 72.3
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 0.0e+00 1328.2 940 71.5
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 0.0e+00 1313.1 949 70.6
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1297.3 948 70.4
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1296.2 948 70.4
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 0.0e+00 1295.8 929 70.2
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 0.0e+00 1295.0 999 67.9
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1290.4 948 69.7
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 0.0e+00 1287.7 944 69.9
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1285.0 943 69.2
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1284.6 931 71.0
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1283.5 950 69.4
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1280.4 950 69.2
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1280.4 947 69.4
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1267.7 945 68.6
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1264.6 937 68.6
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1263.8 951 68.6
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1263.4 930 69.8
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1257.7 939 68.4
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1252.7 922 69.0
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1239.9 973 65.4
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 0.0e+00 1238.8 919 68.2
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 0.0e+00 1234.6 930 67.7
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 0.0e+00 1231.9 941 66.5
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 0.0e+00 1230.3 932 67.9
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1229.5 939 67.4
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 0.0e+00 1229.2 937 67.6
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 0.0e+00 1224.2 943 65.5
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 0.0e+00 1223.8 1053 63.4
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 0.0e+00 1222.6 947 67.2
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1219.9 968 65.2
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1219.9 935 66.8
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1213.7 939 66.2
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1212.6 1014 62.8
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 0.0e+00 1205.3 924 66.7
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 0.0e+00 1205.3 949 64.8
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 0.0e+00 1203.3 940 65.7
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 0.0e+00 1200.3 939 66.1
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1193.7 946 66.0
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1191.0 885 67.9
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 0.0e+00 1189.9 934 65.7
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 0.0e+00 1177.5 915 66.8
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1176.8 1009 61.4
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 0.0e+00 1174.8 924 64.8
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1173.7 922 66.1
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1173.7 872 69.3
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 0.0e+00 1171.8 924 65.3
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1170.2 945 64.7
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 0.0e+00 1169.5 942 63.7
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1169.1 1008 61.0
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1166.8 1008 60.9
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 0.0e+00 1166.0 936 63.0
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 0.0e+00 1164.1 934 63.6
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1159.4 949 63.3
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 0.0e+00 1158.7 934 63.6
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1157.5 940 62.6
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 0.0e+00 1157.5 933 62.6
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1156.7 933 63.0
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 0.0e+00 1153.7 939 63.4
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1153.3 944 62.2
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 0.0e+00 1151.7 933 62.4
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 0.0e+00 1150.6 937 62.4
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1150.2 819 71.3
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1148.3 949 61.2
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1148.3 949 61.2
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 0.0e+00 1148.3 930 64.0
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1140.9 946 62.7
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1137.9 948 60.9
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1136.3 949 60.9
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 0.0e+00 1129.4 992 60.7
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 0.0e+00 1126.3 988 61.0
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1125.9 987 60.0
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1124.0 951 60.6
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1124.0 951 60.6
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1121.3 927 62.4
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 0.0e+00 1117.1 933 62.3
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 0.0e+00 1108.6 977 60.4
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1108.6 928 63.1
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1108.2 934 60.6
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 0.0e+00 1102.8 1054 56.3
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 0.0e+00 1095.1 848 66.4
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1092.4 924 60.3
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 0.0e+00 1090.5 975 59.1
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1088.9 913 62.2
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1087.0 913 62.1
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1085.1 965 59.9
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 0.0e+00 1083.9 915 59.3
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 0.0e+00 1081.6 939 61.8
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 6.4e-312 1074.3 942 60.9
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 1.3e-310 1069.7 937 59.3
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 2.2e-310 1068.9 941 58.4
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 1.4e-304 1049.7 862 64.2
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 2.6e-303 1045.4 937 57.8
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 1.8e-301 1039.3 865 61.8
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 3.8e-299 1031.6 956 58.2
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 1.1e-298 1030.0 952 58.3
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 8.9e-296 1020.4 1163 50.9
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 2.2e-294 1015.8 923 57.3
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 2.9e-294 1015.4 961 56.8
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 3.3e-290 1001.9 1042 53.3
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 2.1e-289 999.2 816 63.2
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 3.6e-289 998.4 947 56.9
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 3.3e-266 922.2 701 68.9
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 1.4e-264 916.8 784 61.7
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 5.8e-263 911.4 947 53.5
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 3.0e-259 899.0 920 54.3
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 1.7e-254 883.2 767 58.7
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 1.8e-251 873.2 972 48.6
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 7.1e-245 851.3 887 50.6
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 2.1e-241 839.7 855 52.4
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 3.1e-240 835.9 1093 44.3
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 2.1e-220 770.0 719 56.6
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 2.2e-206 723.4 941 45.5
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 5.9e-199 698.7 627 58.9
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 4.8e-193 679.1 678 56.0
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 7.7e-191 671.8 758 50.8
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 1.2e-188 664.5 412 77.9
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 4.1e-160 569.7 356 77.2
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 4.6e-159 566.2 402 70.6
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 1.2e-154 551.6 394 70.3
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 1.7e-153 547.7 469 62.5
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 5.6e-141 506.1 711 44.0
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 4.8e-132 476.5 476 56.5
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 1.8e-131 474.6 582 47.4
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 3.3e-125 453.8 282 77.0
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.3e-124 451.8 303 72.3
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.3e-121 441.8 550 46.7
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 1.5e-117 428.3 282 72.7
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 5.3e-107 393.3 321 60.7
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 4.5e-98 363.6 224 79.0
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 1.9e-96 358.2 331 55.0
BcaB04g18154 Brassica carinata HOM05D004101 ORTHO05D005221 5.4e-59 233.8 167 71.3
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 2.9e-52 211.5 215 54.4
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 2.1e-50 205.3 148 68.2
A09p34730 Brassica napus HOM05D004101 ORTHO05D005221 1.3e-49 202.6 134 73.1
QL93p1879_0034 Quercus lobata HOM05D004101 ORTHO05D005221 3.0e-49 201.4 128 76.6
vmacro14429 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 5.4e-43 180.6 284 44.7
Aqoxy2G00645 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 3.5e-34 151.4 121 60.3
SEGI_28351 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 8.7e-33 146.7 106 66.0
PSO017G1167 Papaver somniferum HOM05D004101 ORTHO05D005221 2.4e-30 138.7 113 61.1
SEGI_18218 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 2.9e-28 131.7 76 78.9
SEGI_38945 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 4.8e-23 114.4 86 60.5
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 9.3e-19 100.1 66 78.8
COL.COLO4_06915 Corchorus olitorius HOM05D004101 ORTHO05D005221 4.6e-18 97.8 57 80.7
SHI03798 Sapria himalayana HOM05D004101 ORTHO05D005221 1.3e-17 96.3 276 31.5
Medtr5g080490 Medicago truncatula HOM05D004101 ORTHO05D005221 3.9e-17 94.7 76 60.5
BolC1t03898H Brassica oleracea HOM05D010251 ORTHO05D005221 6.2e-15 87.4 175 34.3
SMO200G0098 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 2.9e-12 78.6 82 51.2
Lsat_1_v5_gn_5_153621 Lactuca sativa HOM05D004101 ORTHO05D005221 2.1e-10 72.4 64 53.1
Pp3c3_10160 Physcomitrium patens HOM05D004101 ORTHO05D005221 7.9e-10 70.5 94 37.2
Os07g0406600 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 3.9e-09 68.2 58 55.2
BolC2t10203H Brassica oleracea HOM05D004101 ORTHO05D027158 3.3e-08 65.1 68 45.6
BolC2t10210H Brassica oleracea HOM05D004101 ORTHO05D027158 5.7e-08 64.3 53 54.7
A01p24750 Brassica napus HOM05D004101 ORTHO05D027158 9.6e-08 63.5 53 54.7
CDE08G1083 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 1.3e-07 63.2 77 45.5
SMO200G0135 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 1.6e-07 62.8 62 50.0
VMungo0251G0072 Vigna mungo HOM05D004101 ORTHO05D005221 1.6e-07 62.8 35 74.3
BcaC05g27051 Brassica carinata HOM05D004101 ORTHO05D027158 2.4e-06 58.9 146 31.5
Medtr1g105770 Medicago truncatula HOM05D004101 ORTHO05D005221 6.9e-06 57.4 85 40.0


User provided reference genes

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