Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.019G071800 Populus trichocarpa HOM05D007718 ORTHO05D009752 1.6e-73 279.3 138 100.0
TWI18G0705 Tripterygium wilfordii HOM05D007718 ORTHO05D009752 9.4e-37 157.1 141 62.4
Manes.02G201400 Manihot esculenta HOM05D007718 ORTHO05D009752 2.7e-36 155.6 137 59.9
Manes.02G205384 Manihot esculenta HOM05D007718 ORTHO05D009752 3.0e-35 152.1 113 67.3
Manes.02G221600 Manihot esculenta HOM05D007718 ORTHO05D009752 3.0e-35 152.1 113 67.3
Dinv22108 Davidia involucrata HOM05D007718 ORTHO05D009752 7.5e-34 147.5 136 57.4
Manes.02G201100 Manihot esculenta HOM05D007718 ORTHO05D009752 7.5e-34 147.5 113 65.5
GSVIVG01036292001 Vitis vinifera HOM05D007718 ORTHO05D009752 7.5e-34 147.5 123 63.4
Prupe.8G007200 Prunus persica HOM05D007718 ORTHO05D009752 4.9e-33 144.8 135 57.0
Actinidia04142 Actinidia chinensis HOM05D007718 ORTHO05D009752 5.9e-31 137.9 138 54.3
RcHm_v2.0_Chr6g0251251 Rosa chinensis HOM05D007718 ORTHO05D009752 2.9e-30 135.6 123 56.1
MD05G1004000 Malus domestica HOM05D007718 ORTHO05D009752 6.6e-30 134.4 112 59.8
Atru.chr13.2505 Acer truncatum HOM05D007718 ORTHO05D009752 2.5e-29 132.5 141 50.4
Atru.chr13.2493 Acer truncatum HOM05D007718 ORTHO05D009752 3.3e-29 132.1 140 50.0
PSO170G0967 Papaver somniferum HOM05D007718 ORTHO05D009752 3.3e-29 132.1 137 51.8
Duzib177G0547 Durio zibethinus HOM05D007718 ORTHO05D009752 9.5e-29 130.6 90 71.1
Nn5g27289 Nelumbo nucifera HOM05D007718 ORTHO05D009752 9.5e-29 130.6 123 57.7
Thecc.08G178100 Theobroma cacao HOM05D007718 ORTHO05D009752 2.1e-28 129.4 94 69.1
PSO017G4737 Papaver somniferum HOM05D007718 ORTHO05D009752 2.8e-28 129.0 135 51.1
QL08p027549 Quercus lobata HOM05D007718 ORTHO05D009752 4.7e-28 128.3 119 53.8
CANSAT21G0081 Cannabis sativa HOM05D007718 ORTHO05D009752 6.1e-28 127.9 84 72.6
CANSAT21G2143 Cannabis sativa HOM05D007718 ORTHO05D009752 6.1e-28 127.9 84 72.6
Rhsim01G0004700 Rhododendron simsii HOM05D007718 ORTHO05D009752 6.1e-28 127.9 123 52.0
Gohir.D08G250400 Gossypium hirsutum HOM05D007718 ORTHO05D009752 8.0e-28 127.5 94 64.9
Gorai.004G267100 Gossypium raimondii HOM05D007718 ORTHO05D009752 8.0e-28 127.5 94 64.9
Gohir.A08G230000 Gossypium hirsutum HOM05D007718 ORTHO05D009752 1.0e-27 127.1 94 64.9
Aqoxy5G00833 Aquilegia oxysepala HOM05D007718 ORTHO05D009752 1.8e-27 126.3 95 63.2
Ciclev10022933m.g Citrus clementina HOM05D007718 ORTHO05D009752 6.8e-27 124.4 110 58.2
FAN27G3322 Fragaria x ananassa HOM05D007718 ORTHO05D009752 8.9e-27 124.0 109 56.9
COL.COLO4_05200 Corchorus olitorius HOM05D007718 ORTHO05D009752 1.5e-26 123.2 81 71.6
Migut.C01378 Erythranthe guttata HOM05D007718 ORTHO05D009752 1.5e-26 123.2 88 62.5
Sed0001698 Sechium edule HOM05D007718 ORTHO05D009752 9.8e-26 120.6 100 58.0
Glyma.08G353800 Glycine max HOM05D007718 ORTHO05D009752 1.3e-25 120.2 129 50.4
ClCG08G001110 Citrullus lanatus HOM05D007718 ORTHO05D009752 1.7e-25 119.8 92 60.9
MELO3C022171.2 Cucumis melo HOM05D007718 ORTHO05D009752 2.2e-25 119.4 107 55.1
EL10Ac1g01266 Beta vulgaris HOM05D007718 ORTHO05D009752 6.3e-25 117.9 98 54.1
Ca_07513_v3 Cicer arietinum L. HOM05D007718 ORTHO05D009752 6.3e-25 117.9 117 50.4
Medtr7g057760 Medicago truncatula HOM05D007718 ORTHO05D009752 6.3e-25 117.9 104 52.9
CDE04G1586 Ceratophyllum demersum HOM05D007718 ORTHO05D009752 1.4e-24 116.7 111 52.3
arahy.Tifrunner.gnm1.ann1.NNV5AG Arachis hypogaea HOM05D007718 ORTHO05D009752 1.8e-24 116.3 117 52.1
Phvul.008G126000 Phaseolus vulgaris HOM05D007718 ORTHO05D009752 2.4e-24 115.9 117 48.7
THA.LOC104807782 Tarenaya hassleriana HOM05D007718 ORTHO05D009752 4.1e-24 115.2 97 58.8
Lalb_Chr03g0041731 Lupinus albus HOM05D007718 ORTHO05D009752 5.4e-24 114.8 111 53.2
arahy.Tifrunner.gnm1.ann1.KNF5LM Arachis hypogaea HOM05D007718 ORTHO05D009752 7.0e-24 114.4 117 52.1
CiPaw.04G009400 Carya illinoinensis HOM05D007718 ORTHO05D009752 2.7e-23 112.5 105 51.4
ECA232G2296 Erigeron canadensis HOM05D005243 ORTHO05D006670 3.5e-23 112.1 123 43.1
SGA_v2.0_scaffold24G10646 Striga asiatica HOM05D007718 ORTHO05D009752 4.6e-23 111.7 88 59.1
TPR.G23283 Trifolium pratense HOM05D007718 ORTHO05D009752 5.9e-23 111.3 103 53.4
TAR383G0451 Trochodendron aralioides HOM05D007718 ORTHO05D009752 2.9e-22 109.0 72 70.8
MSTRG.1597 Avicennia marina HOM05D007718 ORTHO05D009752 5.0e-22 108.2 92 55.4
ATR1089G029 Amborella trichopoda HOM05D007718 ORTHO05D009752 1.9e-21 106.3 117 43.6
HanXRQChr09g0267041 Helianthus annuus HOM05D007718 ORTHO05D009752 7.3e-21 104.4 109 46.8
Ah.05g170340 Amaranthus hybridus HOM05D007718 ORTHO05D009752 2.8e-20 102.4 98 50.0
Lsat_1_v5_gn_3_36061 Lactuca sativa HOM05D007718 ORTHO05D009752 4.7e-20 101.7 82 56.1
Thhalv10000395m.g Eutrema salsugineum HOM05D007718 ORTHO05D009752 6.1e-20 101.3 62 71.0
HPP92_012514 Vanilla planifolia HOM05D007718 ORTHO05D009752 6.1e-20 101.3 110 46.4
CARHR112060 Cardamine hirsuta HOM05D007718 ORTHO05D009752 1.0e-19 100.5 62 72.6
CSS0008152 Camellia sinensis var. sinensis HOM05D007718 ORTHO05D009752 3.1e-19 99.0 66 68.2
AL4G10300 Arabidopsis lyrata HOM05D007718 ORTHO05D009752 5.2e-19 98.2 62 71.0
C04p50420 Brassica napus HOM05D007718 ORTHO05D009752 5.2e-19 98.2 59 74.6
A04p15950 Brassica napus HOM05D007718 ORTHO05D009752 6.8e-19 97.8 68 67.6
Carub.0004s0023 Capsella rubella HOM05D007718 ORTHO05D009752 8.9e-19 97.4 62 69.4
BolC4t26639H Brassica oleracea HOM05D007718 ORTHO05D009752 2.0e-18 96.3 59 72.9
AT2G21195 Arabidopsis thaliana HOM05D007718 ORTHO05D009752 2.6e-18 95.9 68 63.2
BraA04t17231Z Brassica rapa HOM05D007718 ORTHO05D009752 2.6e-18 95.9 94 50.0
Peaxi162Scf00048g00419 Petunia axillaris HOM05D007718 ORTHO05D009752 2.6e-18 95.9 52 80.8
FvH4_2g00852 Fragaria vesca HOM05D007718 ORTHO05D009752 4.4e-18 95.1 74 62.2
Nn5g31449 Nelumbo nucifera HOM05D007718 ORTHO05D009752 5.8e-18 94.7 67 68.7
FAN20G0290 Fragaria x ananassa HOM05D005243 ORTHO05D009752 1.9e-16 89.7 93 53.8
unitig_26.g9859 Utricularia gibba HOM05D007718 ORTHO05D009752 2.4e-16 89.4 67 62.7
vmacro13123 Vaccinium macrocarpon HOM05D007718 ORTHO05D009752 5.4e-16 88.2 51 76.5
Cc10_g08650 Coffea canephora HOM05D007718 ORTHO05D009752 1.6e-15 86.7 79 48.1
AUR62038531 Chenopodium quinoa HOM05D007718 ORTHO05D009752 2.7e-15 85.9 74 55.4
SEGI_14522 Sequoiadendron giganteum HOM05D007718 ORTHO05D009752 1.0e-14 84.0 87 48.3
Os07g0265100 Oryza sativa ssp. japonica HOM05D007718 ORTHO05D009752 1.7e-14 83.2 74 48.6
SalBow7G2847 Salvia bowleyana HOM05D007718 ORTHO05D009752 1.7e-14 83.2 132 37.1
Lj1g0018023 Lotus japonicus HOM05D007718 ORTHO05D009752 3.0e-14 82.4 86 52.3
Zm00001eb304750 Zea mays HOM05D007718 ORTHO05D009752 3.0e-14 82.4 69 49.3
Psat3g145480 Pisum sativum HOM05D007718 ORTHO05D009752 5.6e-13 78.2 84 46.4
AagrBONN_evm.TU.Sc2ySwM_344.3280 Anthoceros agrestis HOM05D007718 ORTHO05D009752 4.7e-12 75.1 60 53.3
Oeu020544.1 Olea europaea HOM05D007718 ORTHO05D009752 4.7e-12 75.1 170 34.7
BcaC02g08810 Brassica carinata HOM05D007718 ORTHO05D009752 4.0e-11 72.0 63 57.1
Aa31LG7G15310 Aethionema arabicum HOM05D007718 ORTHO05D009752 2.6e-10 69.3 44 68.2
Aa31sc115G10 Aethionema arabicum HOM05D007718 ORTHO05D009752 7.5e-10 67.8 41 68.3
VMungo1383G3332 Vigna mungo HOM05D000479 ORTHO05D001285 2.2e-09 66.2 49 61.2
Mapoly0002s0003 Marchantia polymorpha HOM05D007718 ORTHO05D009752 2.4e-08 62.8 83 34.9
CsaV3_5G039910 Cucumis sativus L. HOM05D007718 ORTHO05D009752 6.0e-07 58.2 77 40.3
AagrBONN_evm.TU.Sc2ySwM_344.3283 Anthoceros agrestis HOM05D007718 ORTHO05D009752 1.3e-06 57.0 50 50.0
CSS0003383 Camellia sinensis var. sinensis HOM05D007718 ORTHO05D009752 5.1e-06 55.1 36 63.9


User provided reference genes

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