Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.019G061200 Populus trichocarpa HOM05D004876 ORTHO05D005488 2.2e-91 339.0 175 100.0
QL08p065087 Quercus lobata HOM05D004876 ORTHO05D005488 6.5e-67 257.7 175 80.6
Prupe.2G265600 Prunus persica HOM05D004876 ORTHO05D005488 2.6e-63 245.7 175 76.6
CiPaw.02G093900 Carya illinoinensis HOM05D004876 ORTHO05D005488 6.3e-62 241.1 175 74.9
Duzib114G0677 Durio zibethinus HOM05D004876 ORTHO05D005488 2.4e-61 239.2 177 75.1
CiPaw.04G175400 Carya illinoinensis HOM05D004876 ORTHO05D005488 4.1e-61 238.4 175 75.4
MD01G1169400 Malus domestica HOM05D004876 ORTHO05D005488 5.0e-59 231.5 171 72.5
Lj1g0004349 Lotus japonicus HOM05D004876 ORTHO05D005488 1.9e-58 229.6 171 73.1
MBI15_g39395_MAGBIO Magnolia biondii HOM05D004876 ORTHO05D005488 1.2e-57 226.9 167 73.7
Manes.10G044800 Manihot esculenta HOM05D004876 ORTHO05D005488 1.6e-57 226.5 175 73.1
TAR636G2293 Trochodendron aralioides HOM05D004876 ORTHO05D005488 4.7e-57 224.9 175 72.6
ClCG07G004830 Citrullus lanatus HOM05D004876 ORTHO05D005488 6.1e-57 224.6 172 70.9
Glyma.06G141500 Glycine max HOM05D004876 ORTHO05D005488 6.1e-57 224.6 173 69.9
MELO3C020110.2 Cucumis melo HOM05D004876 ORTHO05D005488 1.0e-56 223.8 172 70.9
TWI09G0651 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 1.0e-56 223.8 186 68.8
CsaV3_5G010740 Cucumis sativus L. HOM05D004876 ORTHO05D005488 1.4e-56 223.4 172 70.3
Atru.chr12.194 Acer truncatum HOM05D004876 ORTHO05D005488 3.0e-56 222.2 185 68.1
FvH4_7g26120 Fragaria vesca HOM05D004876 ORTHO05D005488 3.4e-55 218.8 181 68.0
Phvul.009G042700 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 4.4e-55 218.4 176 68.8
FAN12G2601 Fragaria x ananassa HOM05D004876 ORTHO05D005488 9.8e-55 217.2 167 67.7
VMungo1309G0380 Vigna mungo HOM05D004876 ORTHO05D005488 9.8e-55 217.2 175 69.1
FAN03G2458 Fragaria x ananassa HOM05D004876 ORTHO05D005488 2.2e-54 216.1 179 66.5
FAN10G2920 Fragaria x ananassa HOM05D004876 ORTHO05D005488 2.8e-54 215.7 179 65.9
Cpa.g.sc128.23 Carica papaya HOM05D004876 ORTHO05D005488 3.7e-54 215.3 174 69.5
Sed0020097 Sechium edule HOM05D004876 ORTHO05D005488 3.7e-54 215.3 171 67.8
Phvul.005G185900 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 6.3e-54 214.5 176 68.2
RcHm_v2.0_Chr1g0372561 Rosa chinensis HOM05D004876 ORTHO05D005488 3.1e-53 212.2 164 68.9
CANSAT64G2122 Cannabis sativa HOM05D004876 ORTHO05D005488 5.4e-53 211.5 181 65.2
Thecc.10G185000 Theobroma cacao HOM05D004876 ORTHO05D005488 5.4e-53 211.5 182 68.1
FAN06G0183 Fragaria x ananassa HOM05D004876 ORTHO05D005488 2.7e-52 209.1 180 65.6
CANSAT64G1352 Cannabis sativa HOM05D004876 ORTHO05D005488 5.9e-52 208.0 181 64.1
TWI53G0120 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 7.7e-52 207.6 181 66.3
FvH4_4g04970 Fragaria vesca HOM05D004876 ORTHO05D005488 2.9e-51 205.7 186 60.8
Lalb_Chr11g0067701 Lupinus albus HOM05D004876 ORTHO05D005488 5.0e-51 204.9 181 65.2
PSO675G4155 Papaver somniferum HOM05D004876 ORTHO05D005488 5.0e-51 204.9 169 64.5
THA.LOC104824370 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 8.5e-51 204.1 174 66.1
PGR142G2846 Punica granatum HOM05D004876 ORTHO05D005488 1.1e-50 203.8 181 63.5
AUR62008150 Chenopodium quinoa HOM05D004876 ORTHO05D005488 2.7e-49 199.1 174 63.8
Haze_17370 Corylus avellana HOM05D004876 ORTHO05D005488 2.7e-49 199.1 175 64.6
PSO170G6098 Papaver somniferum HOM05D004876 ORTHO05D005488 4.7e-49 198.4 174 63.8
ATR0733G227 Amborella trichopoda HOM05D004876 ORTHO05D005488 8.0e-49 197.6 175 62.3
AUR62028732 Chenopodium quinoa HOM05D004876 ORTHO05D005488 8.0e-49 197.6 174 63.2
Sabra19G0074800 Salix brachista HOM05D004876 ORTHO05D005488 1.8e-48 196.4 112 90.2
TPR.G13975 Trifolium pratense HOM05D004876 ORTHO05D005488 3.0e-48 195.7 174 66.1
ATR1127G178 Amborella trichopoda HOM05D004876 ORTHO05D005488 8.8e-48 194.1 171 64.3
TPR.G28952 Trifolium pratense HOM05D004876 ORTHO05D005488 8.8e-48 194.1 173 65.3
vmacro06902 Vaccinium macrocarpon HOM05D004876 ORTHO05D005488 1.2e-47 193.7 181 61.9
COL.COLO4_19475 Corchorus olitorius HOM05D004876 ORTHO05D005488 1.5e-47 193.4 181 63.0
Psat5g069360 Pisum sativum HOM05D004876 ORTHO05D005488 1.5e-47 193.4 174 64.9
EL10Ac5g10661 Beta vulgaris HOM05D004876 ORTHO05D005488 1.3e-46 190.3 174 62.6
Aqoxy2G01672 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 6.3e-46 188.0 158 62.7
AL4G38670 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 8.3e-46 187.6 176 60.8
Aqoxy6G02070 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 1.1e-45 187.2 173 59.5
Os03g0114200 Oryza sativa ssp. japonica HOM05D004876 ORTHO05D005488 1.1e-45 187.2 171 60.8
Gohir.D10G184200 Gossypium hirsutum HOM05D004876 ORTHO05D005488 1.4e-45 186.8 182 61.5
Gorai.011G206400 Gossypium raimondii HOM05D004876 ORTHO05D005488 1.4e-45 186.8 182 61.5
Gohir.A10G177600 Gossypium hirsutum HOM05D004876 ORTHO05D005488 1.8e-45 186.4 182 61.5
Carub.0004s2308 Capsella rubella HOM05D004876 ORTHO05D005488 3.1e-45 185.7 178 60.1
A04p31160 Brassica napus HOM05D004876 ORTHO05D005488 4.1e-45 185.3 175 58.3
C04p68560 Brassica napus HOM05D004876 ORTHO05D005488 4.1e-45 185.3 175 58.3
CDE07G1038 Ceratophyllum demersum HOM05D004876 ORTHO05D005488 4.1e-45 185.3 170 61.8
Dinv37250 Davidia involucrata HOM05D004876 ORTHO05D005488 4.1e-45 185.3 170 62.4
AL4G34450 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 7.0e-45 184.5 177 59.9
BraA04t18571Z Brassica rapa HOM05D004876 ORTHO05D005488 9.1e-45 184.1 175 57.7
AT2G40780 Arabidopsis thaliana HOM05D004876 ORTHO05D005488 1.6e-44 183.3 176 59.1
BcaB06g29175 Brassica carinata HOM05D004876 ORTHO05D005488 1.6e-44 183.3 178 59.0
BolC4t28355H Brassica oleracea HOM05D004876 ORTHO05D005488 1.6e-44 183.3 177 59.3
FAN17G0734 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.6e-44 183.3 246 46.7
Duzib106G1237 Durio zibethinus HOM05D004876 ORTHO05D005488 4.5e-44 181.8 181 59.7
Sp4g23100 Schrenkiella parvula HOM05D004876 ORTHO05D005488 4.5e-44 181.8 178 59.0
Migut.F01232 Erythranthe guttata HOM05D004876 ORTHO05D005488 5.9e-44 181.4 174 58.6
Nitab4.5_0006356g0050 Nicotiana tabacum HOM05D004876 ORTHO05D005488 1.3e-43 180.3 175 57.7
HPP92_015433 Vanilla planifolia HOM05D004876 ORTHO05D005488 1.7e-43 179.9 162 62.3
Ciclev10032334m.g Citrus clementina HOM05D004876 ORTHO05D005488 2.3e-43 179.5 159 63.5
Peaxi162Scf00073g02225 Petunia axillaris HOM05D004876 ORTHO05D005488 2.9e-43 179.1 175 58.9
HanXRQChr14g0460541 Helianthus annuus HOM05D004876 ORTHO05D005488 2.5e-42 176.0 175 59.4
CARHR135880 Cardamine hirsuta HOM05D004876 ORTHO05D005488 9.5e-42 174.1 181 56.4
Nitab4.5_0000171g0270 Nicotiana tabacum HOM05D004876 ORTHO05D005488 1.2e-41 173.7 176 56.8
Ca_29868_v3 Cicer arietinum L. HOM05D000260 ORTHO05D000318 1.6e-41 173.3 108 81.5
THA.LOC104803220 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 2.8e-41 172.6 176 58.0
CSS0007534 Camellia sinensis var. sinensis HOM05D004876 ORTHO05D005488 6.1e-41 171.4 175 58.3
Sc10g0003050 Simmondsia chinensis HOM05D004876 ORTHO05D005488 6.1e-41 171.4 121 69.4
Thhalv10017311m.g Eutrema salsugineum HOM05D004876 ORTHO05D005488 1.8e-40 169.9 161 57.8
Lj6g0009237 Lotus japonicus HOM05D004876 ORTHO05D005488 1.8e-40 169.9 171 57.3
Zm00001eb000910 Zea mays HOM05D004876 ORTHO05D005488 8.9e-40 167.5 173 56.1
CAN.G1229.8 Capsicum annuum HOM05D004876 ORTHO05D005488 1.2e-39 167.2 172 54.7
ECA247G1702 Erigeron canadensis HOM05D004876 ORTHO05D008274 1.2e-39 167.2 153 59.5
Rhsim03G0153600 Rhododendron simsii HOM05D004876 ORTHO05D005488 1.5e-39 166.8 181 54.7
Migut.A00831 Erythranthe guttata HOM05D004876 ORTHO05D005488 2.0e-39 166.4 154 55.8
Cc02_g05210 Coffea canephora HOM05D004876 ORTHO05D005488 7.5e-39 164.5 175 54.3
Peaxi162Scf00167g01129 Petunia axillaris HOM05D004876 ORTHO05D005488 7.5e-39 164.5 141 62.4
CiPaw.04G175300 Carya illinoinensis HOM05D004876 ORTHO05D005488 1.7e-38 163.3 106 81.1
PGR142G0395 Punica granatum HOM05D004876 ORTHO05D005488 2.2e-38 162.9 161 53.4
THA.LOC104808402 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 2.9e-38 162.5 136 65.4
Aa31LG3G1350 Aethionema arabicum HOM05D004876 ORTHO05D005488 3.7e-38 162.2 160 58.8
PGSC0003DMG400011645 Solanum tuberosum HOM05D004876 ORTHO05D005488 6.4e-38 161.4 173 56.6
SEGI_18121 Sequoiadendron giganteum HOM05D004876 ORTHO05D005488 8.3e-38 161.0 178 51.1
Ca_29506_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 1.8e-37 159.8 173 56.6
Lsat_1_v5_gn_5_104800 Lactuca sativa HOM05D004876 ORTHO05D005488 2.4e-37 159.5 167 56.3
Sopen05g030710 Solanum pennellii HOM05D004876 ORTHO05D005488 3.2e-37 159.1 170 54.7
Solyc05g052180.3 Solanum lycopersicum HOM05D004876 ORTHO05D005488 5.4e-37 158.3 154 57.1
GSVIVG01038577001 Vitis vinifera HOM05D004876 ORTHO05D005488 7.0e-37 157.9 123 69.1
Aqoxy5G02193 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 9.2e-37 157.5 134 62.7
BcaB01g03515 Brassica carinata HOM05D004876 ORTHO05D005488 1.6e-36 156.8 175 50.9
arahy.Tifrunner.gnm1.ann1.58ULDB Arachis hypogaea HOM05D004876 ORTHO05D005488 5.9e-36 154.8 185 52.4
MSTRG.8381 Avicennia marina HOM05D004876 ORTHO05D005488 5.9e-36 154.8 175 51.4
Ah.11g051130 Amaranthus hybridus HOM05D004876 ORTHO05D005488 2.9e-35 152.5 159 56.0
Ca_16858_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 8.6e-35 151.0 190 52.1
Dinv21858 Davidia involucrata HOM05D004876 ORTHO05D005488 1.5e-34 150.2 108 74.1
Medtr3g093790 Medicago truncatula HOM05D004876 ORTHO05D005488 1.9e-34 149.8 158 54.4
BcaC02g12879 Brassica carinata HOM05D004876 ORTHO05D005488 3.3e-34 149.1 134 58.2
unitig_736.g22953 Utricularia gibba HOM05D004876 ORTHO05D005488 9.5e-34 147.5 172 51.2
Lsat_1_v5_gn_2_126741 Lactuca sativa HOM05D004876 ORTHO05D005488 3.6e-33 145.6 167 54.5
BcaB05g22749 Brassica carinata HOM05D004876 ORTHO05D005488 3.1e-32 142.5 134 57.5
Eucgr.G03147 Eucalyptus grandis HOM05D004876 ORTHO05D005488 4.0e-32 142.1 183 47.5
Oeu006067.1 Olea europaea HOM05D004876 ORTHO05D005488 1.2e-31 140.6 171 47.4
Rhsim04G0113200 Rhododendron simsii HOM05D004876 ORTHO05D005488 2.6e-31 139.4 182 48.9
SalBow7G3110 Salvia bowleyana HOM05D004876 ORTHO05D005488 3.7e-30 135.6 180 46.1
SGA_v2.0_scaffold2G00887 Striga asiatica HOM05D004876 ORTHO05D005488 6.4e-30 134.8 168 48.8
Nitab4.5_0008902g0030 Nicotiana tabacum HOM05D004876 ORTHO05D005488 1.1e-29 134.0 175 48.6
Mapoly0014s0200 Marchantia polymorpha HOM05D004876 ORTHO05D005488 5.4e-29 131.7 187 44.4
Lj8A52T23 Lonicera japonica HOM05D004876 ORTHO05D005488 1.0e-27 127.5 108 61.1
Actinidia13638 Actinidia chinensis HOM05D004876 ORTHO05D005488 1.1e-26 124.0 128 57.0
Pp3c16_8280 Physcomitrium patens HOM05D004876 ORTHO05D005488 2.5e-26 122.9 186 43.0
Nn2g10267 Nelumbo nucifera HOM05D004876 ORTHO05D005488 3.3e-26 122.5 82 80.5
Nn1g06656 Nelumbo nucifera HOM05D004876 ORTHO05D005488 7.3e-26 121.3 116 62.9
Sopen03g025590 Solanum pennellii HOM05D004876 ORTHO05D005488 1.4e-24 117.1 108 56.5
PGSC0003DMG400020604 Solanum tuberosum HOM05D004876 ORTHO05D005488 2.6e-23 112.8 108 54.6
TPR.G24790 Trifolium pratense HOM05D004876 ORTHO05D005488 1.4e-21 107.1 78 73.1
AagrBONN_evm.TU.Sc2ySwM_368.2679 Anthoceros agrestis HOM05D004876 ORTHO05D005488 3.2e-21 105.9 167 38.9
HanXRQChr07g0204961 Helianthus annuus HOM05D004876 ORTHO05D005488 4.1e-21 105.5 113 54.0
C03p81600 Brassica napus HOM05D004876 ORTHO05D005488 1.4e-13 80.5 104 46.2
BolC3t20430H Brassica oleracea HOM05D004876 ORTHO05D005488 1.4e-13 80.5 104 46.2
C01p26050 Brassica napus HOM05D004876 ORTHO05D005488 2.4e-13 79.7 98 49.0
Cre03.g155800 Chlamydomonas reinhardtii HOM05D004876 ORTHO05D005488 3.3e-10 69.3 90 40.0
AL4G14440 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 1.8e-08 63.5 64 53.1
Nitab4.5_0001671g0020 Nicotiana tabacum HOM05D004876 ORTHO05D005488 4.0e-08 62.4 67 55.2
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 4.0e-08 62.4 138 37.7
Actinidia31636 Actinidia chinensis HOM05D004876 ORTHO05D005488 3.4e-07 59.3 134 35.1
MCO11G196 Micromonas commoda HOM05D004876 ORTHO05D005488 1.7e-06 57.0 122 30.3
Zm00001eb290470 Zea mays HOM05D004876 ORTHO05D005488 2.2e-06 56.6 64 42.2
ATR1127G058 Amborella trichopoda HOM05D004876 ORTHO05D005488 4.9e-06 55.5 74 43.2


User provided reference genes

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